CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 128

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M128I128VnonsynAttGtt2982860.95973226904-26906
M128I128VnonsynAtTGtG298100.03355726904-26906
M128I128VnonsynAtTGtA29820.0067114126904-26906
M128I128IsynatTatC1591500.94339626904-26906
M128I128IsynatTatA15990.056603826904-26906
M128I128TnonsynaTtaCt1571560.99363126904-26906
M128I128TnonsynaTTaCA15710.0063694326904-26906
M128I128LnonsynAtTTtG154540.35064926904-26906
M128I128LnonsynAttCtt154500.32467526904-26906
M128I128LnonsynAtTCtG154400.2597426904-26906
M128I128LnonsynAtTTtA15470.045454526904-26906
M128I128LnonsynAtTCtA15430.019480526904-26906
M128I128deldelATT---9494126904-26906
M128I128RnonsynATTCGG77370.48051926904-26906
M128I128RnonsynATtCGt77360.46753226904-26906
M128I128RnonsynaTTaGG7720.02597426904-26906
M128I128RnonsynATTCGA7720.02597426904-26906
M128I128FnonsynAttTtt6565126904-26906
M128I128CnonsynATtTGt4343126904-26906
M128I128WnonsynATTTGG4343126904-26906
M128I128GnonsynATtGGt1780.47058826904-26906
M128I128GnonsynATTGGG1770.41176526904-26906
M128I128GnonsynATTGGA1720.11764726904-26906
M128I128SnonsynaTtaGt1390.69230826904-26906
M128I128XnonsynATTTAG1380.61538526904-26906
M128I128XnonsynATTTGA1340.30769226904-26906
M128I128SnonsynATtTCt1320.15384626904-26906
M128I128SnonsynATTTCG1310.076923126904-26906
M128I128SnonsynATTTCA1310.076923126904-26906
M128I128XnonsynATTTAA1310.076923126904-26906
M128I128YnonsynATtTAt99126904-26906
M128I128MnonsynatTatG99126904-26906
M128I128QnonsynATTCAG55126904-26906
M128I128HnonsynATtCAt55126904-26906
M128I128PnonsynATtCCt420.526904-26906
M128I128PnonsynATTCCA410.2526904-26906
M128I128PnonsynATTCCG410.2526904-26906
M128I128EnonsynATTGAG33126904-26906
M128I128DnonsynATtGAt33126904-26906
M128I128NnonsynaTtaAt22126904-26906
M128I128del1delAtt-tt210.526904-26906
M128I128KnonsynaTTaAA210.526904-26906
M128I128KnonsynaTTaAG210.526904-26906
M128I128del1delaTta-t210.526904-26906

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M128I128VAttGtt286298All0.000055
M128I128VAtTGtG10298All0.000002
M128I128VAtTGtA2298All0
M128I128IatTatC150159All0.000029
M128I128IatTatA9159All0.000002
M128I128TaTtaCt156157All0.00003
M128I128TaTTaCA1157All0
M128I128LAtTTtG54154All0.00001
M128I128LAttCtt50154All0.00001
M128I128LAtTCtG40154All0.000008
M128I128LAtTTtA7154All0.000001
M128I128LAtTCtA3154All0.000001
M128I128LAtTTtG50134B.1.1.70.000045
M128I128LAttCtt40134B.1.1.70.000036
M128I128LAtTCtG37134B.1.1.70.000033
M128I128LAtTTtA5134B.1.1.70.000004
M128I128LAtTCtA2134B.1.1.70.000002
M128I128delATT---9494All0.000018
M128I128delATT---8080B.1.177.210.006118
M128I128RATTCGG3777All0.000007
M128I128RATtCGt3677All0.000007
M128I128RaTTaGG277All0
M128I128RATTCGA277All0
M128I128RATTCGG3470B.1.1.70.00003
M128I128RATtCGt3370B.1.1.70.00003
M128I128RaTTaGG270B.1.1.70.000002
M128I128RATTCGA170B.1.1.70.000001
M128I128FAttTtt6565All0.000012
M128I128FAttTtt5555B.1.1.70.000049
M128I128TaTtaCt5353B.1.1.70.000047
M128I128VAttGtt5252AY.430.00023
M128I128WATTTGG4343All0.000008
M128I128CATtTGt4343All0.000008
M128I128IatTatC4143B.1.1.70.000037
M128I128VAttGtt3143B.1.1.70.000028
M128I128VAtTGtG1043B.1.1.70.000009
M128I128IatTatA243B.1.1.70.000002
M128I128VAtTGtA243B.1.1.70.000002
M128I128WATTTGG4040B.1.1.70.000036
M128I128CATtTGt3939B.1.1.70.000035
M128I128IatTatC3131B.1.5590.775
M128I128VAttGtt2929B.1.177.120.004399
M128I128VAttGtt2727AY.40.000042
M128I128VAttGtt1919B.1.2580.001264
M128I128VAttGtt1919B.1.5510.024516
M128I128IatTatC1718B.1.617.20.000064
M128I128IatTatA118B.1.617.20.000004
M128I128GATtGGt817All0.000002
M128I128GATTGGG717All0.000001
M128I128GATTGGA217All0
M128I128VAttGtt1717B.1.1.2840.001826
M128I128GATTGGG716B.1.1.70.000006
M128I128GATtGGt716B.1.1.70.000006
M128I128GATTGGA216B.1.1.70.000002
M128I128TaTtaCt1414AY.40.000022
M128I128SaTtaGt913All0.000002
M128I128XATTTAG813All0.000002
M128I128XATTTGA413All0.000001
M128I128SATtTCt213All0
M128I128XATTTAA113All0
M128I128SATTTCG113All0
M128I128SATTTCA113All0
M128I128TaTtaCt1313B.1.20.000114
M128I128XATTTAG811B.1.1.70.000007
M128I128XATTTGA311B.1.1.70.000003
M128I128IatTatC1010AY.430.000044
M128I128YATtTAt99All0.000002
M128I128MatTatG99All0.000002
M128I128TaTtaCt99AY.230.000628
M128I128delATT---99B.1.1.70.000008
M128I128VAttGtt99B.1.617.20.000034
M128I128YATtTAt88B.1.1.70.000007
M128I128MatTatG88B.1.1.70.000007
M128I128IatTatC67AY.40.000009
M128I128IatTatA17AY.40.000002
M128I128VAttGtt77AY.440.000043
M128I128VAttGtt77AY.750.000392
M128I128SaTtaGt37B.1.1.70.000003
M128I128SATtTCt27B.1.1.70.000002
M128I128SATTTCG17B.1.1.70.000001
M128I128SATTTCA17B.1.1.70.000001
M128I128IatTatC77B.1.20.000062
M128I128VAttGtt66B.1.1600.000187
M128I128VAttGtt66B.1.1770.000079
M128I128TaTtaCt66B.1.617.20.000023
M128I128QATTCAG55All0.000001
M128I128HATtCAt55All0.000001
M128I128VAttGtt55AY.1190.000177
M128I128VAttGtt55AY.200.000194
M128I128LAtTCtA15B.10.000009
M128I128LAtTCtG15B.10.000009
M128I128LAtTTtA15B.10.000009
M128I128LAtTTtG15B.10.000009
M128I128LAttCtt15B.10.000009
M128I128HATtCAt55B.1.1.70.000004
M128I128QATTCAG55B.1.1.70.000004
M128I128TaTtaCt55B.1.177.560.003338
M128I128TaTtaCt55B.1.221.10.014535
M128I128PATtCCt24All0
M128I128PATTCCA14All0
M128I128PATTCCG14All0
M128I128TaTtaCt34AY.1030.000019
M128I128TaTTaCA14AY.1030.000006
M128I128VAttGtt44AY.1060.00134
M128I128IatTatC44B.10.000037
M128I128IatTatC44B.1.1.2220.000816
M128I128PATtCCt24B.1.1.70.000002
M128I128PATTCCG14B.1.1.70.000001
M128I128PATTCCA14B.1.1.70.000001
M128I128LAttCtt44B.1.20.000035
M128I128VAttGtt44B.1.30.010471
M128I128DATtGAt33All0.000001
M128I128EATTGAG33All0.000001
M128I128IatTatC33AY.1020.00008
M128I128VAttGtt33AY.1050.001929
M128I128VAttGtt33AY.1200.000112
M128I128LAttCtt13AY.250.000006
M128I128LAtTTtG13AY.250.000006
M128I128LAtTCtG13AY.250.000006
M128I128VAttGtt33AY.390.000074
M128I128VAttGtt33AY.420.000121
M128I128TaTtaCt33AY.430.000013
M128I128RATTCGG13B.10.000009
M128I128RATTCGA13B.10.000009
M128I128RATtCGt13B.10.000009
M128I128DATtGAt33B.1.1.70.000003
M128I128EATTGAG33B.1.1.70.000003
M128I128VAttGtt33B.1.2290.029126
M128I128TaTtaCt33B.1.3510.000089
M128I128LAttCtt13B.1.5760.000907
M128I128LAtTCtG13B.1.5760.000907
M128I128LAtTTtG13B.1.5760.000907
M128I128SaTtaGt33C.360.002732
M128I128IatTatC23P.10.000032
M128I128IatTatA13P.10.000016
M128I128TaTtaCt33Q.80.000495
M128I128NaTtaAt22All0
M128I128del1Att-tt12All0
M128I128del1aTta-t12All0
M128I128KaTTaAG12All0
M128I128KaTTaAA12All0
M128I128IatTatC22AY.1060.00067
M128I128RATtCGt12AY.250.000006
M128I128RATTCGG12AY.250.000006
M128I128TaTtaCt22AY.290.000032
M128I128IatTatC22AY.290.000032
M128I128TaTtaCt22AY.3.10.000171
M128I128TaTtaCt22AY.770.002255
M128I128TaTtaCt22AY.90.000135
M128I128TaTtaCt22AY.980.000158
M128I128VAttGtt22B.10.000018
M128I128VAttGtt22B.1.10.000036
M128I128IatTatC22B.1.5460.007407
M128I128RATtCGt12B.1.5760.000907
M128I128RATTCGG12B.1.5760.000907
M128I128TaTtaCt22P.10.000032
M128I128SaTtaGt22P.10.000032
M128I128IatTatC11A.10.000282
M128I128VAttGtt11AY.1000.000046
M128I128TaTtaCt11AY.1020.000027
M128I128IatTatC11AY.1160.000287
M128I128FAttTtt11AY.116.10.000311
M128I128VAttGtt11AY.1180.000063
M128I128TaTtaCt11AY.1180.000063
M128I128IatTatA11AY.1190.000035
M128I128TaTtaCt11AY.1190.000035
M128I128VAttGtt11AY.1210.000135
M128I128IatTatA11AY.1210.000135
M128I128VAttGtt11AY.16.10.00047
M128I128del1aTta-t11AY.200.000039
M128I128IatTatC11AY.230.00007
M128I128FAttTtt11AY.250.000006
M128I128VAttGtt11AY.250.000006
M128I128CATtTGt11AY.250.000006
M128I128WATTTGG11AY.250.000006
M128I128TaTtaCt11AY.250.000006
M128I128VAttGtt11AY.260.000028
M128I128TaTtaCt11AY.260.000028
M128I128delATT---11AY.260.000028
M128I128FAttTtt11AY.270.000065
M128I128VAttGtt11AY.280.00189
M128I128VAttGtt11AY.290.000016
M128I128TaTtaCt11AY.29.10.000221
M128I128VAttGtt11AY.30.00001
M128I128IatTatC11AY.3.10.000085
M128I128TaTtaCt11AY.340.000097
M128I128IatTatC11AY.360.000148
M128I128FAttTtt11AY.40.000002
M128I128TaTtaCt11AY.410.000294
M128I128LAttCtt11AY.430.000004
M128I128IatTatC11AY.440.000006
M128I128VAttGtt11AY.46.60.000072
M128I128IatTatC11AY.50.000021
M128I128TaTtaCt11AY.60.000041
M128I128TaTtaCt11AY.610.000105
M128I128VAttGtt11AY.670.000464
M128I128IatTatC11AY.680.000274
M128I128TaTtaCt11AY.700.000209
M128I128VAttGtt11AY.740.000116
M128I128IatTatC11AY.98.10.000048
M128I128FAttTtt11B.10.000009
M128I128WATTTGG11B.10.000009
M128I128XATTTGA11B.10.000009
M128I128CATtTGt11B.10.000009
M128I128TaTtaCt11B.10.000009
M128I128delATT---11B.10.000009
M128I128FAttTtt11B.1.10.000018
M128I128MatTatG11B.1.10.000018
M128I128LAtTTtG11B.1.10.000018
M128I128IatTatC11B.1.10.000018
M128I128TaTtaCt11B.1.1.10.000327
M128I128IatTatC11B.1.1.1410.002012
M128I128GATtGGt11B.1.1.2210.010101
M128I128del1Att-tt11B.1.1.3060.000438
M128I128VAttGtt11B.1.1.3060.000438
M128I128delATT---11B.1.1.4200.001006
M128I128IatTatC11B.1.1.5070.008696
M128I128TaTtaCt11B.1.1.5190.00004
M128I128NaTtaAt11B.1.1.70.000001
M128I128KaTTaAG11B.1.1.70.000001
M128I128IatTatC11B.1.1770.000013
M128I128TaTtaCt11B.1.177.860.000183
M128I128VAttGtt11B.1.177.860.000183
M128I128SaTtaGt11B.1.20.000009
M128I128VAttGtt11B.1.2340.000132
M128I128IatTatC11B.1.2580.000067
M128I128delATT---11B.1.258.110.000396
M128I128TaTtaCt11B.1.351.30.000876
M128I128IatTatC11B.1.3750.00082
M128I128TaTtaCt11B.1.3770.004566
M128I128TaTtaCt11B.1.4080.00369
M128I128delATT---11B.1.4270.00005
M128I128VAttGtt11B.1.4690.00361
M128I128VAttGtt11B.1.5170.000427
M128I128TaTtaCt11B.1.5250.000113
M128I128LAttCtt11B.1.5260.000024
M128I128VAttGtt11B.1.5260.000024
M128I128VAttGtt11B.1.5410.004425
M128I128CATtTGt11B.1.5740.002151
M128I128FAttTtt11B.1.5740.002151
M128I128FAttTtt11B.1.5760.000907
M128I128CATtTGt11B.1.5760.000907
M128I128WATTTGG11B.1.5760.000907
M128I128TaTtaCt11B.1.5880.00091
M128I128IatTatA11B.1.5950.000261
M128I128TaTtaCt11B.1.5960.000087
M128I128TaTtaCt11B.1.6120.002653
M128I128IatTatC11B.1.617.10.000129
M128I128TaTtaCt11B.1.617.10.000129
M128I128LAttCtt11B.1.617.20.000004
M128I128TaTtaCt11C.10.002392
M128I128VAttGtt11C.370.000116
M128I128FAttTtt11D.20.000075
M128I128IatTatA11D.20.000075
M128I128TaTtaCt11D.20.000075
M128I128TaTtaCt11L.30.003546
M128I128LAtTTtA11P.10.000016
M128I128FAttTtt11P.10.000016
M128I128KaTTaAA11P.10.000016
M128I128NaTtaAt11P.10.000016
M128I128XATTTAA11P.10.000016
M128I128YATtTAt11P.10.000016
M128I128IatTatC11P.1.140.000048
M128I128IatTatC11Q.20.000613
M128I128TaTtaCt11Q.30.000145
M128I128IatTatC11Q.80.000165