CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 125 | H125Y | nonsyn | Cat | Tat | 8463 | 8443 | 0.997637 | 26895-26897 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 125 | H125Y | Cat | Tat | 8443 | 8463 | All | 0.001615 |
M | 125 | H125Y | Cat | Tat | 2125 | 2139 | B.1.1.7 | 0.001902 |
M | 125 | H125Y | Cat | Tat | 665 | 665 | AY.4 | 0.001035 |
M | 125 | H125Y | Cat | Tat | 602 | 602 | B.1.1.269 | 0.814614 |
M | 125 | H125Y | Cat | Tat | 302 | 302 | AY.25 | 0.001816 |
M | 125 | H125Y | Cat | Tat | 293 | 294 | B.1.2 | 0.00258 |
M | 125 | H125Y | Cat | Tat | 287 | 287 | B.1.617.2 | 0.001081 |
M | 125 | H125Y | Cat | Tat | 271 | 271 | B.1.177.72 | 0.918644 |
M | 125 | H125Y | Cat | Tat | 247 | 247 | AY.43 | 0.001094 |
M | 125 | H125Y | Cat | Tat | 196 | 196 | AV.1 | 0.989899 |
M | 125 | H125Y | Cat | Tat | 166 | 167 | B.1.177 | 0.002186 |
M | 125 | H125Y | Cat | Tat | 128 | 128 | B.1 | 0.001172 |
M | 125 | H125Y | Cat | Tat | 117 | 117 | AY.3 | 0.001164 |
M | 125 | H125Y | Cat | Tat | 110 | 110 | B.1.1.519 | 0.004368 |
M | 125 | H125Y | Cat | Tat | 110 | 110 | B.1.351 | 0.00327 |
M | 125 | H125Y | Cat | Tat | 102 | 104 | AY.44 | 0.000621 |
M | 125 | H125Y | Cat | Tat | 93 | 93 | B.1.177.82 | 0.044391 |
M | 125 | H125Y | Cat | Tat | 89 | 89 | AY.103 | 0.000553 |
M | 125 | H125Y | Cat | Tat | 80 | 80 | B.1.637 | 0.005846 |
M | 125 | H125Y | Cat | Tat | 79 | 79 | AY.98.1 | 0.003826 |
M | 125 | H125Y | Cat | Tat | 77 | 77 | B.1.160 | 0.002401 |
M | 125 | H125Y | Cat | Tat | 73 | 73 | AY.27 | 0.004725 |
M | 125 | H125Y | Cat | Tat | 67 | 68 | B.1.1 | 0.001215 |
M | 125 | H125Y | Cat | Tat | 65 | 65 | B.1.526 | 0.001528 |
M | 125 | H125Y | Cat | Tat | 60 | 61 | P.1 | 0.000945 |
M | 125 | H125Y | Cat | Tat | 53 | 53 | AY.6 | 0.00218 |
M | 125 | H125Y | Cat | Tat | 50 | 50 | B.1.36 | 0.007295 |
M | 125 | H125Y | Cat | Tat | 50 | 50 | B.1.609 | 0.023969 |
M | 125 | H125Y | Cat | Tat | 49 | 49 | AY.29 | 0.000773 |
M | 125 | H125Y | Cat | Tat | 44 | 44 | AY.114 | 0.010169 |
M | 125 | H125Y | Cat | Tat | 43 | 43 | B.1.1.482 | 1 |
M | 125 | H125Y | Cat | Tat | 41 | 41 | AY.5 | 0.000847 |
M | 125 | H125Y | Cat | Tat | 41 | 41 | B.1.616 | 1 |
M | 125 | H125Y | Cat | Tat | 39 | 39 | B.1.243 | 0.002714 |
M | 125 | H125Y | Cat | Tat | 39 | 39 | B.1.429 | 0.000918 |
M | 125 | H125Y | Cat | Tat | 38 | 38 | AY.33 | 0.002538 |
M | 125 | H125Y | Cat | Tat | 38 | 38 | AY.39 | 0.000939 |
M | 125 | H125Y | Cat | Tat | 38 | 38 | W.4 | 0.051351 |
M | 125 | H125Y | Cat | Tat | 32 | 32 | B.1.621 | 0.002833 |
M | 125 | H125Y | Cat | Tat | 31 | 31 | AY.4.2 | 0.000672 |
M | 125 | H125Y | Cat | Tat | 29 | 29 | B.1.1.214 | 0.001608 |
M | 125 | H125Y | Cat | Tat | 28 | 28 | AY.47 | 0.000871 |
M | 125 | H125Y | Cat | Tat | 28 | 28 | AY.75 | 0.001569 |
M | 125 | H125Y | Cat | Tat | 28 | 28 | B.1.221.3 | 0.023333 |
M | 125 | H125Y | Cat | Tat | 26 | 26 | AY.102 | 0.000689 |
M | 125 | H125Y | Cat | Tat | 26 | 26 | AY.61 | 0.002724 |
M | 125 | H125Y | Cat | Tat | 23 | 23 | AY.4.3 | 0.01936 |
M | 125 | H125Y | Cat | Tat | 23 | 23 | R.1 | 0.00207 |
M | 125 | H125Y | Cat | Tat | 22 | 22 | AY.100 | 0.001012 |
M | 125 | H125Y | Cat | Tat | 21 | 21 | B.1.258 | 0.001397 |
M | 125 | H125Y | Cat | Tat | 20 | 20 | AY.9.2 | 0.000735 |
M | 125 | H125Y | Cat | Tat | 19 | 19 | AY.26 | 0.000538 |
M | 125 | H125Y | Cat | Tat | 19 | 19 | B.1.258.17 | 0.001975 |
M | 125 | H125Y | Cat | Tat | 19 | 19 | C.37 | 0.002205 |
M | 125 | H125Y | Cat | Tat | 18 | 18 | B.1.628 | 0.006342 |
M | 125 | H125Y | Cat | Tat | 18 | 18 | D.2 | 0.001351 |
M | 125 | H125Y | Cat | Tat | 18 | 18 | Q.4 | 0.008186 |
M | 125 | H125Y | Cat | Tat | 17 | 17 | AY.99.2 | 0.001567 |
M | 125 | H125Y | Cat | Tat | 17 | 17 | B.1.234 | 0.002243 |
M | 125 | H125Y | Cat | Tat | 17 | 17 | B.1.427 | 0.000858 |
M | 125 | H125Y | Cat | Tat | 16 | 16 | AY.119 | 0.000565 |
M | 125 | H125Y | Cat | Tat | 16 | 16 | B.1.596 | 0.001394 |
M | 125 | H125Y | Cat | Tat | 15 | 15 | A | 0.005805 |
M | 125 | H125Y | Cat | Tat | 15 | 15 | B.1.1.222 | 0.00306 |
M | 125 | H125Y | Cat | Tat | 15 | 15 | B.1.1.420 | 0.015091 |
M | 125 | H125Y | Cat | Tat | 15 | 15 | B.1.36.8 | 0.015 |
M | 125 | H125Y | Cat | Tat | 14 | 14 | AY.20 | 0.000544 |
M | 125 | H125Y | Cat | Tat | 14 | 14 | B.1.177.15 | 0.008833 |
M | 125 | H125Y | Cat | Tat | 14 | 14 | B.1.221 | 0.000994 |
M | 125 | H125Y | Cat | Tat | 13 | 13 | B.1.1.216 | 0.011576 |
M | 125 | H125Y | Cat | Tat | 13 | 13 | B.1.1.284 | 0.001396 |
M | 125 | H125Y | Cat | Tat | 13 | 13 | B.1.438.1 | 0.001394 |
M | 125 | H125Y | Cat | Tat | 12 | 12 | AY.117 | 0.001014 |
M | 125 | H125Y | Cat | Tat | 12 | 12 | AY.120 | 0.000446 |
M | 125 | H125Y | Cat | Tat | 12 | 12 | AY.39.1 | 0.000475 |
M | 125 | H125Y | Cat | Tat | 12 | 12 | Z.1 | 0.034682 |
M | 125 | H125Y | Cat | Tat | 11 | 11 | AY.93 | 0.003004 |
M | 125 | H125Y | Cat | Tat | 11 | 11 | B.1.1.39 | 0.005607 |
M | 125 | H125Y | Cat | Tat | 11 | 11 | B.1.525 | 0.001245 |
M | 125 | H125Y | Cat | Tat | 10 | 10 | AY.118 | 0.000626 |
M | 125 | H125Y | Cat | Tat | 10 | 10 | AY.50 | 0.007994 |
M | 125 | H125Y | Cat | Tat | 10 | 10 | B.1.1.25 | 0.005685 |
M | 125 | H125Y | Cat | Tat | 9 | 9 | AY.14 | 0.000792 |
M | 125 | H125Y | Cat | Tat | 9 | 9 | B.1.1.37 | 0.001736 |
M | 125 | H125Y | Cat | Tat | 9 | 9 | B.1.595 | 0.002349 |
M | 125 | H125Y | Cat | Tat | 9 | 9 | B.1.621.1 | 0.004552 |
M | 125 | H125Y | Cat | Tat | 9 | 9 | C.36 | 0.008197 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | AY.38 | 0.003994 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | AY.42 | 0.000322 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | AY.70 | 0.001668 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | B.1.1.318 | 0.002414 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | B.1.177.7 | 0.001319 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | B.1.177.81 | 0.001515 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | B.1.600 | 0.046784 |
M | 125 | H125Y | Cat | Tat | 8 | 8 | Q.1 | 0.001011 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | AY.41 | 0.002058 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | B.1.177.44 | 0.003633 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | B.1.177.86 | 0.001284 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | B.1.36.29 | 0.003621 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | B.1.456 | 0.022876 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | B.1.551 | 0.009032 |
M | 125 | H125Y | Cat | Tat | 7 | 7 | P.1.4 | 0.006836 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | AY.36 | 0.000889 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | AY.9.2.1 | 0.011858 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | AY.98 | 0.000474 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | B | 0.000767 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | B.1.1.311 | 0.002149 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | B.1.1.56 | 0.107143 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | B.1.177.4 | 0.001266 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | B.1.400 | 0.002574 |
M | 125 | H125Y | Cat | Tat | 6 | 6 | Q.8 | 0.000989 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | AY.23 | 0.000349 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | AY.4.5 | 0.000537 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | AY.45 | 0.000608 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | AY.54 | 0.000477 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | AY.9 | 0.000338 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.1.196 | 0.028571 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.1.28 | 0.001556 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.160.16 | 0.004647 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.572 | 0.125 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.575 | 0.001517 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.577 | 0.003436 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | B.1.623 | 0.002682 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | C.30 | 0.008636 |
M | 125 | H125Y | Cat | Tat | 5 | 5 | P.2 | 0.000933 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | AB.1 | 0.032787 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | AY.62 | 0.001743 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | AY.63 | 0.001547 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | AY.73 | 0.002661 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | AY.75.1 | 0.000721 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | AY.77 | 0.00451 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | B.1.1.434 | 0.001394 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | B.1.346 | 0.005242 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | B.40 | 0.001457 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | P.1.14 | 0.000191 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | P.1.2 | 0.004624 |
M | 125 | H125Y | Cat | Tat | 4 | 4 | P.1.7 | 0.001277 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.113 | 0.000427 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.116.1 | 0.000934 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.120.1 | 0.000963 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.13 | 0.000483 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.16.1 | 0.00141 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.34 | 0.000291 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.46.5 | 0.000595 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.59 | 0.001589 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.7 | 0.000588 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.74 | 0.000347 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.78 | 0.004622 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.84 | 0.001312 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.9.1 | 0.000251 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | AY.92 | 0.000862 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.1.117 | 0.029126 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.1.157 | 0.00274 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.1.231 | 0.009288 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.1.326 | 0.005282 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.1.41 | 0.018987 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.104 | 0.01107 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.111 | 0.003525 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.160.32 | 0.012876 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.177.20 | 0.004552 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.177.21 | 0.000229 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.177.32 | 0.004049 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.177.73 | 0.001699 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.177.8 | 0.002257 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.177.84 | 0.02 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.240 | 0.000647 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.298 | 0.006342 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.319 | 0.009146 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.320 | 0.003736 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.369 | 0.000856 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.396 | 0.002117 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.424 | 0.024194 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.439 | 0.017751 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.466.2 | 0.001174 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.1.564 | 0.001278 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | B.3 | 0.002492 |
M | 125 | H125Y | Cat | Tat | 3 | 3 | P.1.15 | 0.000697 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AE.8 | 0.000978 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AT.1 | 0.010256 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.1 | 0.000791 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.105 | 0.001286 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.116 | 0.000574 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.120.2.1 | 0.000997 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.21 | 0.003795 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.29.1 | 0.000441 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.3.1 | 0.000171 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.39.2 | 0.003082 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.40 | 0.001929 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.46 | 0.000208 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.46.1 | 0.002053 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.46.6 | 0.000144 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.65 | 0.001066 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.69 | 0.000373 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.71 | 0.00095 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.8 | 0.001212 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.85 | 0.000854 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.86 | 0.00166 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | AY.87 | 0.001665 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.242 | 0.086957 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.265 | 0.006309 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.301 | 0.002358 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.372 | 0.001377 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.413 | 0.013793 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.432 | 0.002532 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.44 | 0.004819 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.1.50 | 0.001358 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.177.10 | 0.001756 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.177.5 | 0.002484 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.177.6 | 0.001953 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.177.60 | 0.000437 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.199 | 0.008264 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.258.4 | 0.006897 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.326 | 0.015152 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.332 | 0.006993 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.349 | 0.00143 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.356 | 0.003454 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.362.2 | 0.009434 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.405 | 0.024691 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.413 | 0.008511 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.422 | 0.001625 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.576 | 0.001813 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.587 | 0.003795 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.617.1 | 0.000258 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.627 | 0.00404 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | B.1.91 | 0.004149 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | C.18 | 0.005181 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | C.35 | 0.001548 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | P.1.1 | 0.000635 |
M | 125 | H125Y | Cat | Tat | 2 | 2 | Q.6 | 0.013245 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | A.1 | 0.000282 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | A.2 | 0.000662 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | A.2.5 | 0.000499 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | A.21 | 0.00277 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | A.27 | 0.001656 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | A.5 | 0.001923 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AA.2 | 0.007692 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AU.2 | 0.002421 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.110 | 0.000113 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.111 | 0.000183 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.16 | 0.00038 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.17 | 0.008197 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.19 | 0.00114 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.2 | 0.000356 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.23.1 | 0.000417 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.28 | 0.00189 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.30 | 0.000396 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.32 | 0.000532 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.35 | 0.000233 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.4.4 | 0.000409 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.46.3 | 0.000934 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.48 | 0.000465 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.5.2 | 0.002463 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.5.4 | 0.000277 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.52 | 0.000814 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.56 | 0.001605 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.58 | 0.000907 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.72 | 0.001361 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AY.91 | 0.00073 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | AZ.1 | 0.000867 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.153 | 0.001095 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.163 | 0.007634 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.164 | 0.005155 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.174 | 0.003378 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.186 | 0.003436 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.207 | 0.001182 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.227 | 0.004348 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.277 | 0.000759 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.286 | 0.002899 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.291 | 0.000742 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.302 | 0.002075 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.306 | 0.000438 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.316 | 0.000925 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.317 | 0.000412 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.322 | 0.008772 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.329 | 0.003846 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.348 | 0.000796 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.366 | 0.015873 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.377 | 0.001381 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.380 | 0.009804 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.381 | 0.04 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.385 | 0.004464 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.412 | 0.007634 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.416 | 0.000905 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.436 | 0.025641 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.54 | 0.003021 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.67 | 0.004566 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.1.83 | 0.00271 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.110.3 | 0.000718 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.128 | 0.000635 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.146 | 0.004237 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.151 | 0.011111 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.160.26 | 0.002421 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.17 | 0.000821 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.19 | 0.001431 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.2 | 0.004545 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.23 | 0.003236 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.3 | 0.007634 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.46 | 0.000918 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.53 | 0.002392 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.54 | 0.000606 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.57 | 0.000281 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.65 | 0.000665 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.69 | 0.001484 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.75 | 0.001041 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.177.87 | 0.000728 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.210 | 0.002132 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.214.2 | 0.0006 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.215 | 0.009615 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.218 | 0.005155 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.220 | 0.01087 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.222 | 0.001692 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.232 | 0.000537 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.236 | 0.002053 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.239 | 0.001221 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.258.21 | 0.007752 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.258.24 | 0.010753 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.265 | 0.001271 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.279 | 0.000514 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.302 | 0.013333 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.305 | 0.002151 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.311 | 0.000275 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.321 | 0.034483 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.355 | 0.011111 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.36.34 | 0.021277 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.367 | 0.000792 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.377 | 0.004566 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.428 | 0.00102 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.429.1 | 0.012048 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.468 | 0.005714 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.469 | 0.00361 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.486 | 0.111111 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.497 | 0.000315 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.499 | 0.00105 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.509 | 0.000866 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.517 | 0.000427 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.523 | 0.002451 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.524 | 0.001406 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.539 | 0.017544 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.560 | 0.00463 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.565 | 0.00081 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.582 | 0.000491 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.588 | 0.00091 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.595.3 | 0.026316 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.598 | 0.016949 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.599 | 0.00365 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.1.620 | 0.000946 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.39 | 0.002331 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.4 | 0.002208 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.4.7 | 0.010101 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | B.55 | 0.00295 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | N.5 | 0.001767 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | P.1.10 | 0.000269 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | P.1.13 | 0.000898 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | P.1.17 | 0.000162 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | P.1.8 | 0.004785 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | P.3 | 0.001595 |
M | 125 | H125Y | Cat | Tat | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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