CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 124

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	124	L124L		syn	ctC	ctT	16612	16336	0.983386	26892-26894
M	124	L124L		syn	ctC	ctA	16612	156	0.0093908	26892-26894
M	124	L124L		syn	ctC	ctG	16612	98	0.00589935	26892-26894
M	124	L124L		syn	CtC	TtA	16612	19	0.00114375	26892-26894
M	124	L124L		syn	CtC	TtG	16612	3	0.000180592	26892-26894
M	124	L124F		nonsyn	Ctc	Ttc	814	748	0.918919	26892-26894
M	124	L124F		nonsyn	CtC	TtT	814	66	0.0810811	26892-26894
M	124	L124I		nonsyn	Ctc	Atc	174	171	0.982759	26892-26894
M	124	L124I		nonsyn	CtC	AtT	174	3	0.0172414	26892-26894
M	124	L124V		nonsyn	Ctc	Gtc	136	81	0.595588	26892-26894
M	124	L124V		nonsyn	CtC	GtT	136	39	0.286765	26892-26894
M	124	L124V		nonsyn	CtC	GtA	136	15	0.110294	26892-26894
M	124	L124V		nonsyn	CtC	GtG	136	1	0.00735294	26892-26894
M	124	L124del		del	CTC	---	93	93	1	26892-26894
M	124	L124S		nonsyn	CTC	TCT	88	41	0.465909	26892-26894
M	124	L124S		nonsyn	CTc	TCc	88	32	0.363636	26892-26894
M	124	L124S		nonsyn	CTC	TCA	88	14	0.159091	26892-26894
M	124	L124S		nonsyn	CTC	TCG	88	1	0.0113636	26892-26894
M	124	L124A		nonsyn	CTC	GCT	56	27	0.482143	26892-26894
M	124	L124A		nonsyn	CTc	GCc	56	16	0.285714	26892-26894
M	124	L124A		nonsyn	CTC	GCA	56	12	0.214286	26892-26894
M	124	L124A		nonsyn	CTC	GCG	56	1	0.0178571	26892-26894
M	124	L124P		nonsyn	cTc	cCc	48	29	0.604167	26892-26894
M	124	L124P		nonsyn	cTC	cCT	48	17	0.354167	26892-26894
M	124	L124P		nonsyn	cTC	cCA	48	2	0.0416667	26892-26894
M	124	L124del1		del	cTc	c-c	13	11	0.846154	26892-26894
M	124	L124R		nonsyn	cTc	cGc	13	9	0.692308	26892-26894
M	124	L124R		nonsyn	cTC	cGT	13	3	0.230769	26892-26894
M	124	L124del1		del	ctC	ct-	13	2	0.153846	26892-26894
M	124	L124R		nonsyn	cTC	cGG	13	1	0.0769231	26892-26894
M	124	L124C		nonsyn	CTc	TGc	9	5	0.555556	26892-26894
M	124	L124C		nonsyn	CTC	TGT	9	4	0.444444	26892-26894
M	124	L124Y		nonsyn	CTc	TAc	6	3	0.5	26892-26894
M	124	L124Y		nonsyn	CTC	TAT	6	3	0.5	26892-26894
M	124	L124D		nonsyn	CTc	GAc	4	2	0.5	26892-26894
M	124	L124D		nonsyn	CTC	GAT	4	2	0.5	26892-26894
M	124	L124T		nonsyn	CTc	ACc	3	2	0.666667	26892-26894
M	124	L124T		nonsyn	CTC	ACT	3	1	0.333333	26892-26894
M	124	L124H		nonsyn	cTc	cAc	2	1	0.5	26892-26894
M	124	L124H		nonsyn	cTC	cAT	2	1	0.5	26892-26894
M	124	L124G		nonsyn	CTc	GGc	2	1	0.5	26892-26894
M	124	L124G		nonsyn	CTC	GGT	2	1	0.5	26892-26894
M	124	L124E		nonsyn	CTC	GAA	1	1	1	26892-26894
M	124	L124W		nonsyn	CTC	TGG	1	1	1	26892-26894
M	124	L124X		nonsyn	CTC	TAA	1	1	1	26892-26894

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	124	L124L	ctC	ctT	16336	16612	All	0.003124
M	124	L124L	ctC	ctA	156	16612	All	0.00003
M	124	L124L	ctC	ctG	98	16612	All	0.000019
M	124	L124L	CtC	TtA	19	16612	All	0.000004
M	124	L124L	CtC	TtG	3	16612	All	0.000001
M	124	L124L	ctC	ctT	6921	6921	C.37	0.803273
M	124	L124L	ctC	ctT	1786	1786	AY.9.2	0.065599
M	124	L124L	ctC	ctT	1255	1319	B.1.1.7	0.001124
M	124	L124L	ctC	ctA	38	1319	B.1.1.7	0.000034
M	124	L124L	CtC	TtA	17	1319	B.1.1.7	0.000015
M	124	L124L	ctC	ctG	8	1319	B.1.1.7	0.000007
M	124	L124L	CtC	TtG	1	1319	B.1.1.7	0.000001
M	124	L124L	ctC	ctT	851	852	AY.5.3	0.287112
M	124	L124L	ctC	ctA	1	852	AY.5.3	0.000337
M	124	L124F	Ctc	Ttc	748	814	All	0.000143
M	124	L124F	CtC	TtT	66	814	All	0.000013
M	124	L124L	ctC	ctT	445	453	AY.4	0.000693
M	124	L124L	ctC	ctG	5	453	AY.4	0.000008
M	124	L124L	ctC	ctA	3	453	AY.4	0.000005
M	124	L124L	ctC	ctT	370	370	B.1.177.24	0.479275
M	124	L124L	ctC	ctT	299	299	C.37.1	0.782723
M	124	L124L	ctC	ctT	247	253	AY.44	0.001503
M	124	L124L	ctC	ctG	6	253	AY.44	0.000037
M	124	L124L	ctC	ctT	242	242	B.1.1.228	0.737805
M	124	L124L	ctC	ctT	233	235	B.1.2	0.002052
M	124	L124L	ctC	ctA	1	235	B.1.2	0.000009
M	124	L124L	ctC	ctG	1	235	B.1.2	0.000009
M	124	L124F	Ctc	Ttc	175	233	B.1.1.7	0.000157
M	124	L124F	CtC	TtT	58	233	B.1.1.7	0.000052
M	124	L124L	ctC	ctT	205	215	B.1.617.2	0.000772
M	124	L124L	ctC	ctA	9	215	B.1.617.2	0.000034
M	124	L124L	ctC	ctG	1	215	B.1.617.2	0.000004
M	124	L124L	ctC	ctT	177	177	B.1.258.11	0.070155
M	124	L124L	ctC	ctT	167	175	B.1	0.00153
M	124	L124L	ctC	ctG	6	175	B.1	0.000055
M	124	L124L	CtC	TtG	1	175	B.1	0.000009
M	124	L124L	ctC	ctA	1	175	B.1	0.000009
M	124	L124I	Ctc	Atc	171	174	All	0.000033
M	124	L124I	CtC	AtT	3	174	All	0.000001
M	124	L124L	ctC	ctT	170	172	AY.39.1	0.006734
M	124	L124L	ctC	ctA	1	172	AY.39.1	0.00004
M	124	L124L	ctC	ctG	1	172	AY.39.1	0.00004
M	124	L124F	Ctc	Ttc	169	169	AY.4	0.000263
M	124	L124L	ctC	ctT	151	151	AY.119	0.005332
M	124	L124V	Ctc	Gtc	81	136	All	0.000015
M	124	L124V	CtC	GtT	39	136	All	0.000007
M	124	L124V	CtC	GtA	15	136	All	0.000003
M	124	L124V	CtC	GtG	1	136	All	0
M	124	L124L	ctC	ctT	101	133	AY.103	0.000627
M	124	L124L	ctC	ctA	32	133	AY.103	0.000199
M	124	L124L	ctC	ctT	65	116	AY.4.2.1	0.009684
M	124	L124L	ctC	ctG	51	116	AY.4.2.1	0.007598
M	124	L124L	ctC	ctT	109	115	AY.43	0.000483
M	124	L124L	ctC	ctA	5	115	AY.43	0.000022
M	124	L124L	CtC	TtA	1	115	AY.43	0.000004
M	124	L124L	ctC	ctT	102	111	AY.25	0.000614
M	124	L124L	ctC	ctA	9	111	AY.25	0.000054
M	124	L124L	ctC	ctT	104	106	B.1.177	0.001369
M	124	L124L	ctC	ctG	1	106	B.1.177	0.000013
M	124	L124L	ctC	ctA	1	106	B.1.177	0.000013
M	124	L124del	CTC	---	93	93	All	0.000018
M	124	L124S	CTC	TCT	41	88	All	0.000008
M	124	L124S	CTc	TCc	32	88	All	0.000006
M	124	L124S	CTC	TCA	14	88	All	0.000003
M	124	L124S	CTC	TCG	1	88	All	0
M	124	L124L	ctC	ctT	85	86	AY.3	0.000845
M	124	L124L	ctC	ctA	1	86	AY.3	0.00001
M	124	L124V	CtC	GtT	34	84	B.1.1.7	0.00003
M	124	L124V	Ctc	Gtc	34	84	B.1.1.7	0.00003
M	124	L124V	CtC	GtA	15	84	B.1.1.7	0.000013
M	124	L124V	CtC	GtG	1	84	B.1.1.7	0.000001
M	124	L124del	CTC	---	77	77	B.1.177.21	0.005888
M	124	L124S	CTC	TCT	37	75	B.1.1.7	0.000033
M	124	L124S	CTc	TCc	24	75	B.1.1.7	0.000021
M	124	L124S	CTC	TCA	13	75	B.1.1.7	0.000012
M	124	L124S	CTC	TCG	1	75	B.1.1.7	0.000001
M	124	L124L	ctC	ctT	69	69	P.1	0.001087
M	124	L124L	ctC	ctT	67	67	AY.118	0.004197
M	124	L124L	ctC	ctT	63	63	AE.1	0.715909
M	124	L124L	ctC	ctT	58	63	B.1.351	0.001724
M	124	L124L	ctC	ctA	4	63	B.1.351	0.000119
M	124	L124L	CtC	TtA	1	63	B.1.351	0.00003
M	124	L124L	ctC	ctT	58	58	B.1.160	0.001809
M	124	L124A	CTC	GCT	27	56	All	0.000005
M	124	L124A	CTc	GCc	16	56	All	0.000003
M	124	L124A	CTC	GCA	12	56	All	0.000002
M	124	L124A	CTC	GCG	1	56	All	0
M	124	L124L	ctC	ctT	53	53	AY.111	0.009707
M	124	L124L	ctC	ctT	49	49	B.1.1.214	0.002717
M	124	L124A	CTC	GCT	24	49	B.1.1.7	0.000021
M	124	L124A	CTc	GCc	12	49	B.1.1.7	0.000011
M	124	L124A	CTC	GCA	12	49	B.1.1.7	0.000011
M	124	L124A	CTC	GCG	1	49	B.1.1.7	0.000001
M	124	L124P	cTc	cCc	29	48	All	0.000006
M	124	L124P	cTC	cCT	17	48	All	0.000003
M	124	L124P	cTC	cCA	2	48	All	0
M	124	L124L	ctC	ctA	35	46	AY.102	0.000928
M	124	L124L	ctC	ctT	11	46	AY.102	0.000292
M	124	L124L	ctC	ctT	46	46	B.1.438.4	0.978723
M	124	L124L	ctC	ctT	44	45	AY.117	0.003719
M	124	L124L	ctC	ctA	1	45	AY.117	0.000085
M	124	L124L	ctC	ctT	45	45	B.1.1.39	0.022936
M	124	L124L	ctC	ctT	43	44	B.1.1	0.00078
M	124	L124L	ctC	ctG	1	44	B.1.1	0.000018
M	124	L124L	ctC	ctT	40	41	AY.100	0.00184
M	124	L124L	ctC	ctA	1	41	AY.100	0.000046
M	124	L124L	ctC	ctT	40	40	B.1.243	0.002783
M	124	L124L	ctC	ctT	38	38	P.1.10	0.01024
M	124	L124L	ctC	ctT	37	37	B.1.613	1
M	124	L124L	ctC	ctT	36	36	B.1.1.519	0.00143
M	124	L124L	ctC	ctT	36	36	B.1.429	0.000847
M	124	L124L	ctC	ctT	36	36	B.1.628	0.012685
M	124	L124L	ctC	ctT	35	35	B.1.36.35	0.091146
M	124	L124I	Ctc	Atc	33	33	B.1.1.7	0.00003
M	124	L124F	Ctc	Ttc	32	32	AY.103	0.000199
M	124	L124L	ctC	ctT	31	31	B.1.258.14	0.030392
M	124	L124F	Ctc	Ttc	31	31	B.1.617.2	0.000117
M	124	L124I	Ctc	Atc	30	30	AY.25	0.00018
M	124	L124L	ctC	ctT	30	30	N.10	0.882353
M	124	L124P	cTC	cCT	14	29	B.1.1.7	0.000013
M	124	L124P	cTc	cCc	14	29	B.1.1.7	0.000013
M	124	L124P	cTC	cCA	1	29	B.1.1.7	0.000001
M	124	L124L	ctC	ctT	29	29	B.1.131	0.254386
M	124	L124F	Ctc	Ttc	28	28	AY.43	0.000124
M	124	L124L	ctC	ctT	28	28	Q.1	0.003537
M	124	L124L	ctC	ctT	27	27	B.1.438.1	0.002896
M	124	L124L	ctC	ctT	26	26	AY.20	0.00101
M	124	L124L	ctC	ctT	26	26	B.1.240	0.005605
M	124	L124L	ctC	ctT	26	26	B.1.36	0.003793
M	124	L124L	ctC	ctT	26	26	B.1.427	0.001313
M	124	L124L	ctC	ctT	25	25	AY.120	0.000929
M	124	L124L	ctC	ctT	17	24	AY.4.2	0.000369
M	124	L124L	ctC	ctG	7	24	AY.4.2	0.000152
M	124	L124L	ctC	ctT	23	24	B.1.575	0.006978
M	124	L124L	ctC	ctG	1	24	B.1.575	0.000303
M	124	L124L	ctC	ctT	23	23	AY.29	0.000363
M	124	L124L	ctC	ctT	23	23	B.1.1.416	0.020814
M	124	L124L	ctC	ctT	22	23	B.1.526	0.000517
M	124	L124L	ctC	ctG	1	23	B.1.526	0.000024
M	124	L124L	ctC	ctT	23	23	B.1.609	0.011026
M	124	L124L	ctC	ctT	22	22	B.1.177.86	0.004036
M	124	L124L	ctC	ctT	20	20	B.1.177.56	0.013351
M	124	L124L	ctC	ctT	20	20	B.1.525	0.002263
M	124	L124L	ctC	ctT	19	19	AY.41	0.005585
M	124	L124L	ctC	ctT	18	18	AY.23	0.001255
M	124	L124F	Ctc	Ttc	18	18	AY.44	0.00011
M	124	L124L	ctC	ctT	18	18	B.1.177.55	0.041958
M	124	L124L	ctC	ctT	17	18	B.1.621	0.001505
M	124	L124L	ctC	ctG	1	18	B.1.621	0.000089
M	124	L124L	ctC	ctT	16	17	AY.26	0.000453
M	124	L124L	ctC	ctA	1	17	AY.26	0.000028
M	124	L124F	Ctc	Ttc	14	17	B.1	0.000128
M	124	L124F	CtC	TtT	3	17	B.1	0.000027
M	124	L124F	Ctc	Ttc	17	17	B.1.1.279	0.019058
M	124	L124F	Ctc	Ttc	16	16	AY.29	0.000252
M	124	L124F	Ctc	Ttc	16	16	B.1.526	0.000376
M	124	L124F	Ctc	Ttc	14	15	AY.25	0.000084
M	124	L124F	CtC	TtT	1	15	AY.25	0.000006
M	124	L124L	ctC	ctT	15	15	B.1.177.2	0.068182
M	124	L124L	ctC	ctT	15	15	B.1.221	0.001065
M	124	L124F	Ctc	Ttc	15	15	B.1.429	0.000353
M	124	L124I	Ctc	Atc	15	15	B.1.617.2	0.000056
M	124	L124L	ctC	ctT	14	14	AY.39	0.000346
M	124	L124F	Ctc	Ttc	14	14	B.1.1.88	1
M	124	L124L	ctC	ctT	14	14	B.1.177.73	0.007928
M	124	L124V	Ctc	Gtc	13	13	A.15	0.206349
M	124	L124del1	cTc	c-c	11	13	All	0.000002
M	124	L124R	cTc	cGc	9	13	All	0.000002
M	124	L124R	cTC	cGT	3	13	All	0.000001
M	124	L124del1	ctC	ct-	2	13	All	0
M	124	L124R	cTC	cGG	1	13	All	0
M	124	L124L	ctC	ctT	13	13	AY.3.1	0.001108
M	124	L124L	ctC	ctT	13	13	B.1.1.33	0.005471
M	124	L124L	ctC	ctT	13	13	B.1.229	0.126214
M	124	L124L	ctC	ctT	13	13	C.36.1	0.053942
M	124	L124L	ctC	ctT	12	12	AY.12	0.003793
M	124	L124L	ctC	ctT	12	12	AY.47	0.000373
M	124	L124L	ctC	ctT	12	12	AY.9.1	0.001005
M	124	L124L	ctC	ctT	10	11	AY.74	0.001156
M	124	L124L	ctC	ctA	1	11	AY.74	0.000116
M	124	L124L	ctC	ctT	11	11	AY.9	0.000744
M	124	L124L	ctC	ctT	11	11	AY.98	0.000869
M	124	L124F	Ctc	Ttc	11	11	B.1.1	0.0002
M	124	L124L	ctC	ctT	11	11	B.1.1.28	0.003424
M	124	L124L	ctC	ctT	11	11	B.1.1.480	0.275
M	124	L124F	Ctc	Ttc	11	11	B.1.617.1	0.001419
M	124	L124F	Ctc	Ttc	10	10	AY.120	0.000372
M	124	L124L	ctC	ctT	10	10	B.1.234	0.001319
M	124	L124L	ctC	ctT	9	9	A.2.5	0.004491
M	124	L124L	ctC	ctT	9	9	A.2.5.3	0.092784
M	124	L124C	CTc	TGc	5	9	All	0.000001
M	124	L124C	CTC	TGT	4	9	All	0.000001
M	124	L124V	Ctc	Gtc	9	9	AY.103	0.000056
M	124	L124I	Ctc	Atc	9	9	AY.26	0.000255
M	124	L124L	ctC	ctT	9	9	AY.5	0.000186
M	124	L124L	ctC	ctT	9	9	AY.75.1	0.001623
M	124	L124L	ctC	ctT	9	9	B.1.1.525	0.04918
M	124	L124F	Ctc	Ttc	9	9	B.1.177	0.000119
M	124	L124F	Ctc	Ttc	9	9	B.1.2	0.000079
M	124	L124L	ctC	ctT	9	9	B.1.258	0.000599
M	124	L124L	ctC	ctT	9	9	B.1.280	0.064286
M	124	L124I	Ctc	Atc	8	8	AY.103	0.00005
M	124	L124L	ctC	ctT	8	8	AY.121	0.001083
M	124	L124L	ctC	ctT	8	8	AY.33	0.000534
M	124	L124F	Ctc	Ttc	8	8	AY.4.2	0.000174
M	124	L124L	ctC	ctT	8	8	AY.42	0.000322
M	124	L124L	ctC	ctT	8	8	AY.6	0.000329
M	124	L124del	CTC	---	8	8	B.1.1.7	0.000007
M	124	L124R	cTc	cGc	5	8	B.1.1.7	0.000004
M	124	L124C	CTc	TGc	4	8	B.1.1.7	0.000004
M	124	L124C	CTC	TGT	4	8	B.1.1.7	0.000004
M	124	L124R	cTC	cGT	3	8	B.1.1.7	0.000003
M	124	L124L	ctC	ctT	6	8	B.1.369	0.001711
M	124	L124L	CtC	TtG	1	8	B.1.369	0.000285
M	124	L124L	ctC	ctG	1	8	B.1.369	0.000285
M	124	L124L	ctC	ctT	8	8	B.6.6	0.007111
M	124	L124L	ctC	ctT	8	8	P.1.14	0.000382
M	124	L124L	ctC	ctT	8	8	Q.8	0.001319
M	124	L124L	ctC	ctT	7	7	AY.75	0.000392
M	124	L124L	ctC	ctT	7	7	AY.92	0.002011
M	124	L124L	ctC	ctT	7	7	B.1.1.159	0.03271
M	124	L124L	ctC	ctT	7	7	B.1.1.284	0.000752
M	124	L124L	ctC	ctT	7	7	B.1.210	0.014925
M	124	L124L	ctC	ctT	7	7	B.1.635	0.122807
M	124	L124L	ctC	ctT	7	7	B.1.637	0.000512
M	124	L124Y	CTc	TAc	3	6	All	0.000001
M	124	L124Y	CTC	TAT	3	6	All	0.000001
M	124	L124L	ctC	ctT	6	6	AY.16	0.002278
M	124	L124V	Ctc	Gtc	6	6	AY.4	0.000009
M	124	L124I	Ctc	Atc	6	6	AY.4	0.000009
M	124	L124L	ctC	ctT	6	6	AY.59	0.003178
M	124	L124L	ctC	ctT	6	6	AY.61	0.000629
M	124	L124L	ctC	ctT	6	6	AY.91	0.004383
M	124	L124L	ctC	ctT	6	6	AY.98.1	0.000291
M	124	L124I	Ctc	Atc	5	6	B.1	0.000046
M	124	L124P	cTc	cCc	5	6	B.1	0.000046
M	124	L124I	CtC	AtT	1	6	B.1	0.000009
M	124	L124P	cTC	cCT	1	6	B.1	0.000009
M	124	L124L	ctC	ctT	6	6	B.1.1.1	0.00196
M	124	L124Y	CTC	TAT	3	6	B.1.1.7	0.000003
M	124	L124Y	CTc	TAc	3	6	B.1.1.7	0.000003
M	124	L124L	ctC	ctT	6	6	B.1.497	0.001889
M	124	L124L	ctC	ctT	6	6	B.1.9.5	0.034091
M	124	L124L	ctC	ctT	6	6	P.2	0.00112
M	124	L124L	ctC	ctT	6	6	Q.3	0.00087
M	124	L124F	Ctc	Ttc	5	5	AY.102	0.000133
M	124	L124L	ctC	ctT	5	5	AY.4.5	0.000537
M	124	L124F	Ctc	Ttc	5	5	AY.42	0.000201
M	124	L124L	ctC	ctT	5	5	AY.45	0.000608
M	124	L124L	ctC	ctT	5	5	AY.46	0.00052
M	124	L124F	Ctc	Ttc	5	5	AY.6	0.000206
M	124	L124L	ctC	ctT	5	5	AY.89	0.02451
M	124	L124V	Ctc	Gtc	4	5	B.1	0.000037
M	124	L124S	CTc	TCc	4	5	B.1	0.000037
M	124	L124V	CtC	GtT	1	5	B.1	0.000009
M	124	L124S	CTC	TCT	1	5	B.1	0.000009
M	124	L124L	ctC	ctT	5	5	B.1.1.141	0.01006
M	124	L124L	ctC	ctT	5	5	B.1.1.222	0.00102
M	124	L124L	ctC	ctT	5	5	B.1.1.318	0.001509
M	124	L124L	ctC	ctT	5	5	B.1.177.21	0.000382
M	124	L124L	ctC	ctT	5	5	B.1.177.75	0.005203
M	124	L124L	ctC	ctT	5	5	B.1.438	0.03268
M	124	L124L	ctC	ctT	5	5	D.2	0.000375
M	124	L124L	ctC	ctT	4	4	A.15	0.063492
M	124	L124L	ctC	ctT	4	4	A.5	0.007692
M	124	L124D	CTc	GAc	2	4	All	0
M	124	L124D	CTC	GAT	2	4	All	0
M	124	L124F	Ctc	Ttc	4	4	AY.117	0.000338
M	124	L124L	ctC	ctT	4	4	AY.13	0.000644
M	124	L124I	Ctc	Atc	4	4	AY.19	0.004561
M	124	L124L	ctC	ctT	4	4	AY.2	0.001425
M	124	L124I	Ctc	Atc	4	4	AY.43	0.000018
M	124	L124del1	cTc	c-c	4	4	AY.44	0.000024
M	124	L124L	ctC	ctT	4	4	AY.46.4	0.000658
M	124	L124F	Ctc	Ttc	4	4	AY.46.6	0.000289
M	124	L124F	Ctc	Ttc	4	4	AY.5	0.000083
M	124	L124F	Ctc	Ttc	4	4	AY.5.4	0.001107
M	124	L124I	Ctc	Atc	4	4	AY.59	0.002119
M	124	L124I	Ctc	Atc	4	4	AY.61	0.000419
M	124	L124L	ctC	ctT	4	4	AY.69	0.000747
M	124	L124L	ctC	ctT	4	4	AY.7.2	0.002237
M	124	L124F	Ctc	Ttc	4	4	AY.75	0.000224
M	124	L124L	ctC	ctT	4	4	B.1.1.189	0.006051
M	124	L124L	ctC	ctT	4	4	B.1.1.301	0.004717
M	124	L124D	CTc	GAc	2	4	B.1.1.7	0.000002
M	124	L124D	CTC	GAT	2	4	B.1.1.7	0.000002
M	124	L124L	ctC	ctT	4	4	B.1.239	0.004884
M	124	L124L	ctC	ctT	4	4	B.1.499	0.004202
M	124	L124I	Ctc	Atc	4	4	P.1	0.000063
M	124	L124F	Ctc	Ttc	3	4	P.1	0.000047
M	124	L124F	CtC	TtT	1	4	P.1	0.000016
M	124	L124L	ctC	ctT	3	3	A.23.1	0.002113
M	124	L124T	CTc	ACc	2	3	All	0
M	124	L124T	CTC	ACT	1	3	All	0
M	124	L124F	Ctc	Ttc	3	3	AY.121	0.000406
M	124	L124F	Ctc	Ttc	3	3	AY.26	0.000085
M	124	L124L	ctC	ctT	2	3	AY.27	0.000129
M	124	L124L	ctC	ctA	1	3	AY.27	0.000065
M	124	L124F	Ctc	Ttc	3	3	AY.3.1	0.000256
M	124	L124L	ctC	ctT	3	3	AY.34	0.000291
M	124	L124L	ctC	ctT	3	3	AY.35	0.000699
M	124	L124I	Ctc	Atc	3	3	AY.44	0.000018
M	124	L124F	Ctc	Ttc	3	3	AY.46.2	0.001906
M	124	L124L	ctC	ctT	3	3	AY.5.4	0.00083
M	124	L124L	ctC	ctT	2	3	AY.7.1	0.000225
M	124	L124L	ctC	ctG	1	3	AY.7.1	0.000113
M	124	L124L	ctC	ctT	3	3	B	0.000383
M	124	L124A	CTc	GCc	2	3	B.1	0.000018
M	124	L124A	CTC	GCT	1	3	B.1	0.000009
M	124	L124L	ctC	ctT	3	3	B.1.1.269	0.00406
M	124	L124L	ctC	ctT	3	3	B.1.1.372	0.002066
M	124	L124L	ctC	ctT	3	3	B.1.160.25	0.033333
M	124	L124L	ctC	ctT	3	3	B.1.177.5	0.003727
M	124	L124L	ctC	ctT	3	3	B.1.177.81	0.000568
M	124	L124L	ctC	ctT	2	3	B.1.177.87	0.001456
M	124	L124L	ctC	ctA	1	3	B.1.177.87	0.000728
M	124	L124I	Ctc	Atc	3	3	B.1.2	0.000026
M	124	L124L	ctC	ctT	3	3	B.1.232	0.001612
M	124	L124F	Ctc	Ttc	3	3	B.1.241	0.002435
M	124	L124F	Ctc	Ttc	2	3	B.1.258	0.000133
M	124	L124F	CtC	TtT	1	3	B.1.258	0.000067
M	124	L124L	ctC	ctT	3	3	B.1.258.17	0.000312
M	124	L124I	Ctc	Atc	3	3	B.1.526	0.000071
M	124	L124L	ctC	ctT	3	3	B.1.561	0.001191
M	124	L124L	ctC	ctT	3	3	B.1.577	0.002062
M	124	L124F	Ctc	Ttc	3	3	B.1.596	0.000261
M	124	L124L	ctC	ctT	3	3	B.1.617.1	0.000387
M	124	L124F	Ctc	Ttc	3	3	B.40	0.001093
M	124	L124L	ctC	ctT	3	3	C.1.2	0.012766
M	124	L124V	Ctc	Gtc	2	3	P.1	0.000032
M	124	L124V	CtC	GtT	1	3	P.1	0.000016
M	124	L124L	ctC	ctT	3	3	P.1.12	0.001452
M	124	L124L	ctC	ctT	3	3	P.1.15	0.000697
M	124	L124L	ctC	ctT	3	3	P.1.17	0.000485
M	124	L124L	ctC	ctT	3	3	P.1.7	0.000958
M	124	L124L	ctC	ctT	2	3	R.1	0.00018
M	124	L124L	ctC	ctG	1	3	R.1	0.00009
M	124	L124L	ctC	ctT	2	2	A.2	0.001324
M	124	L124H	cTc	cAc	1	2	All	0
M	124	L124H	cTC	cAT	1	2	All	0
M	124	L124G	CTc	GGc	1	2	All	0
M	124	L124G	CTC	GGT	1	2	All	0
M	124	L124L	ctC	ctT	2	2	AY.101	0.000981
M	124	L124I	Ctc	Atc	2	2	AY.102	0.000053
M	124	L124L	ctC	ctT	2	2	AY.105	0.001286
M	124	L124L	ctC	ctT	2	2	AY.110	0.000225
M	124	L124F	Ctc	Ttc	2	2	AY.119	0.000071
M	124	L124F	Ctc	Ttc	2	2	AY.20	0.000078
M	124	L124F	Ctc	Ttc	2	2	AY.24	0.000862
M	124	L124A	CTc	GCc	1	2	AY.25	0.000006
M	124	L124V	Ctc	Gtc	1	2	AY.25	0.000006
M	124	L124V	CtC	GtT	1	2	AY.25	0.000006
M	124	L124A	CTC	GCT	1	2	AY.25	0.000006
M	124	L124S	CTc	TCc	1	2	AY.25	0.000006
M	124	L124S	CTC	TCT	1	2	AY.25	0.000006
M	124	L124L	ctC	ctT	2	2	AY.28	0.003781
M	124	L124V	Ctc	Gtc	2	2	AY.29.1	0.000441
M	124	L124F	Ctc	Ttc	2	2	AY.3	0.00002
M	124	L124F	Ctc	Ttc	2	2	AY.33	0.000134
M	124	L124V	Ctc	Gtc	2	2	AY.43	0.000009
M	124	L124L	ctC	ctT	2	2	AY.46.6	0.000144
M	124	L124L	ctC	ctT	2	2	AY.52	0.001629
M	124	L124L	ctC	ctG	1	2	AY.55	0.000917
M	124	L124L	ctC	ctT	1	2	AY.55	0.000917
M	124	L124L	ctC	ctT	2	2	AY.60	0.001876
M	124	L124I	Ctc	Atc	2	2	AY.75.1	0.000361
M	124	L124L	ctC	ctT	2	2	AY.76	0.009662
M	124	L124L	ctC	ctA	1	2	AY.79	0.001211
M	124	L124L	ctC	ctT	1	2	AY.79	0.001211
M	124	L124F	Ctc	Ttc	2	2	AY.84	0.000875
M	124	L124L	ctC	ctT	2	2	AY.85	0.000854
M	124	L124F	Ctc	Ttc	2	2	AY.92	0.000575
M	124	L124F	Ctc	Ttc	2	2	AY.98	0.000158
M	124	L124L	ctC	ctT	2	2	AY.99.2	0.000184
M	124	L124T	CTC	ACT	1	2	B.1	0.000009
M	124	L124T	CTc	ACc	1	2	B.1	0.000009
M	124	L124L	ctC	ctT	2	2	B.1.1.117	0.019417
M	124	L124L	ctC	ctT	2	2	B.1.1.192	0.004619
M	124	L124L	ctC	ctT	2	2	B.1.1.302	0.004149
M	124	L124L	ctC	ctT	2	2	B.1.1.317	0.000823
M	124	L124L	ctC	ctT	2	2	B.1.1.375	0.02381
M	124	L124L	ctC	ctT	2	2	B.1.1.464	0.002946
M	124	L124L	ctC	ctT	2	2	B.1.1.50	0.001358
M	124	L124G	CTc	GGc	1	2	B.1.1.7	0.000001
M	124	L124G	CTC	GGT	1	2	B.1.1.7	0.000001
M	124	L124H	cTC	cAT	1	2	B.1.1.7	0.000001
M	124	L124H	cTc	cAc	1	2	B.1.1.7	0.000001
M	124	L124L	ctC	ctT	2	2	B.1.118	0.013423
M	124	L124I	Ctc	Atc	2	2	B.1.160	0.000062
M	124	L124F	Ctc	Ttc	2	2	B.1.177.15	0.001262
M	124	L124F	Ctc	Ttc	2	2	B.1.177.21	0.000153
M	124	L124L	ctC	ctT	2	2	B.1.177.44	0.001038
M	124	L124L	ctC	ctT	2	2	B.1.177.82	0.000955
M	124	L124L	ctC	ctT	2	2	B.1.199	0.008264
M	124	L124P	cTc	cCc	2	2	B.1.2	0.000018
M	124	L124F	Ctc	Ttc	2	2	B.1.243	0.000139
M	124	L124P	cTC	cCT	1	2	B.1.258	0.000067
M	124	L124P	cTc	cCc	1	2	B.1.258	0.000067
M	124	L124S	CTC	TCT	1	2	B.1.258	0.000067
M	124	L124S	CTc	TCc	1	2	B.1.258	0.000067
M	124	L124L	ctC	ctT	2	2	B.1.319	0.006098
M	124	L124L	ctC	ctT	2	2	B.1.342	0.2
M	124	L124S	CTC	TCA	1	2	B.1.351	0.00003
M	124	L124P	cTC	cCA	1	2	B.1.351	0.00003
M	124	L124S	CTc	TCc	1	2	B.1.351	0.00003
M	124	L124P	cTc	cCc	1	2	B.1.351	0.00003
M	124	L124L	ctC	ctT	2	2	B.1.36.17	0.000988
M	124	L124L	ctC	ctT	1	2	B.1.36.18	0.00042
M	124	L124L	ctC	ctG	1	2	B.1.36.18	0.00042
M	124	L124L	ctC	ctT	2	2	B.1.36.29	0.001035
M	124	L124R	cTC	cGG	1	2	B.1.369	0.000285
M	124	L124R	cTc	cGc	1	2	B.1.369	0.000285
M	124	L124L	ctC	ctT	2	2	B.1.399	0.003868
M	124	L124L	ctC	ctT	2	2	B.1.404	0.002604
M	124	L124I	Ctc	Atc	2	2	B.1.409	0.001563
M	124	L124L	ctC	ctT	2	2	B.1.471	0.005464
M	124	L124L	ctC	ctT	2	2	B.1.517	0.000854
M	124	L124V	CtC	GtT	1	2	B.1.576	0.000907
M	124	L124F	Ctc	Ttc	1	2	B.1.576	0.000907
M	124	L124F	CtC	TtT	1	2	B.1.576	0.000907
M	124	L124V	Ctc	Gtc	1	2	B.1.576	0.000907
M	124	L124L	ctC	ctT	2	2	B.1.596	0.000174
M	124	L124L	ctC	ctA	2	2	B.1.617.3	0.00597
M	124	L124L	ctC	ctT	2	2	B.1.621.1	0.001012
M	124	L124L	ctC	ctA	2	2	C.32	0.046512
M	124	L124I	CtC	AtT	2	2	C.37	0.000232
M	124	L124L	ctC	ctT	2	2	C.39	0.037736
M	124	L124L	ctC	ctT	2	2	N.9	0.011905
M	124	L124A	CTc	GCc	1	2	P.1	0.000016
M	124	L124S	CTC	TCT	1	2	P.1	0.000016
M	124	L124S	CTc	TCc	1	2	P.1	0.000016
M	124	L124A	CTC	GCT	1	2	P.1	0.000016
M	124	L124I	Ctc	Atc	2	2	P.1.15	0.000465
M	124	L124V	Ctc	Gtc	2	2	P.2	0.000373
M	124	L124P	cTc	cCc	1	1		0.055556
M	124	L124L	ctC	ctT	1	1		0.055556
M	124	L124L	ctC	ctT	1	1	A	0.000387
M	124	L124L	ctC	ctT	1	1	A.24	0.071429
M	124	L124L	ctC	ctT	1	1	AA.2	0.007692
M	124	L124X	CTC	TAA	1	1	All	0
M	124	L124E	CTC	GAA	1	1	All	0
M	124	L124W	CTC	TGG	1	1	All	0
M	124	L124F	Ctc	Ttc	1	1	AN.1	0.02
M	124	L124F	Ctc	Ttc	1	1	AY.100	0.000046
M	124	L124I	Ctc	Atc	1	1	AY.100	0.000046
M	124	L124L	ctC	ctA	1	1	AY.104	0.001984
M	124	L124F	Ctc	Ttc	1	1	AY.105	0.000643
M	124	L124L	ctC	ctT	1	1	AY.107	0.000466
M	124	L124F	Ctc	Ttc	1	1	AY.110	0.000113
M	124	L124F	Ctc	Ttc	1	1	AY.113	0.000142
M	124	L124I	Ctc	Atc	1	1	AY.113	0.000142
M	124	L124L	ctC	ctT	1	1	AY.113	0.000142
M	124	L124F	Ctc	Ttc	1	1	AY.118	0.000063
M	124	L124I	Ctc	Atc	1	1	AY.119	0.000035
M	124	L124I	Ctc	Atc	1	1	AY.120	0.000037
M	124	L124del1	cTc	c-c	1	1	AY.120.1	0.000321
M	124	L124L	ctC	ctT	1	1	AY.120.1	0.000321
M	124	L124F	Ctc	Ttc	1	1	AY.13	0.000161
M	124	L124L	ctC	ctT	1	1	AY.14	0.000088
M	124	L124L	ctC	ctT	1	1	AY.16.1	0.00047
M	124	L124I	Ctc	Atc	1	1	AY.20	0.000039
M	124	L124F	Ctc	Ttc	1	1	AY.23	0.00007
M	124	L124del	CTC	---	1	1	AY.26	0.000028
M	124	L124del1	cTc	c-c	1	1	AY.26	0.000028
M	124	L124P	cTc	cCc	1	1	AY.27	0.000065
M	124	L124I	Ctc	Atc	1	1	AY.29	0.000016
M	124	L124F	Ctc	Ttc	1	1	AY.29.1	0.000221
M	124	L124L	ctC	ctT	1	1	AY.29.1	0.000221
M	124	L124L	ctC	ctT	1	1	AY.30	0.000396
M	124	L124I	Ctc	Atc	1	1	AY.33	0.000067
M	124	L124I	Ctc	Atc	1	1	AY.34	0.000097
M	124	L124L	ctC	ctT	1	1	AY.36	0.000148
M	124	L124F	Ctc	Ttc	1	1	AY.36	0.000148
M	124	L124L	ctC	ctT	1	1	AY.38	0.000499
M	124	L124I	Ctc	Atc	1	1	AY.38	0.000499
M	124	L124I	Ctc	Atc	1	1	AY.39	0.000025
M	124	L124F	Ctc	Ttc	1	1	AY.39	0.000025
M	124	L124F	Ctc	Ttc	1	1	AY.39.1	0.00004
M	124	L124I	Ctc	Atc	1	1	AY.39.1	0.00004
M	124	L124I	Ctc	Atc	1	1	AY.4.2	0.000022
M	124	L124F	Ctc	Ttc	1	1	AY.4.2.1	0.000149
M	124	L124L	ctC	ctT	1	1	AY.4.4	0.000409
M	124	L124P	cTC	cCT	1	1	AY.44	0.000006
M	124	L124V	Ctc	Gtc	1	1	AY.44	0.000006
M	124	L124R	cTc	cGc	1	1	AY.44	0.000006
M	124	L124V	Ctc	Gtc	1	1	AY.45	0.000122
M	124	L124F	Ctc	Ttc	1	1	AY.46	0.000104
M	124	L124L	ctC	ctT	1	1	AY.46.3	0.000934
M	124	L124L	ctC	ctT	1	1	AY.46.5	0.000198
M	124	L124V	Ctc	Gtc	1	1	AY.47	0.000031
M	124	L124F	Ctc	Ttc	1	1	AY.47	0.000031
M	124	L124del1	cTc	c-c	1	1	AY.48	0.000465
M	124	L124L	ctC	ctT	1	1	AY.49	0.003195
M	124	L124L	ctC	ctT	1	1	AY.51	0.000909
M	124	L124F	Ctc	Ttc	1	1	AY.53	0.000288
M	124	L124L	ctC	ctT	1	1	AY.53	0.000288
M	124	L124L	ctC	ctT	1	1	AY.54	0.000095
M	124	L124F	Ctc	Ttc	1	1	AY.62	0.000436
M	124	L124L	ctC	ctT	1	1	AY.64	0.000595
M	124	L124del1	cTc	c-c	1	1	AY.67	0.000464
M	124	L124L	ctC	ctT	1	1	AY.68	0.000274
M	124	L124F	Ctc	Ttc	1	1	AY.68	0.000274
M	124	L124F	Ctc	Ttc	1	1	AY.7.2	0.000559
M	124	L124L	ctC	ctT	1	1	AY.70	0.000209
M	124	L124L	ctC	ctT	1	1	AY.71	0.000475
M	124	L124L	ctC	ctT	1	1	AY.72	0.001361
M	124	L124F	Ctc	Ttc	1	1	AY.88	0.000884
M	124	L124del	CTC	---	1	1	AY.9	0.000068
M	124	L124F	Ctc	Ttc	1	1	AY.9.2	0.000037
M	124	L124del1	cTc	c-c	1	1	AY.9.2	0.000037
M	124	L124L	ctC	ctT	1	1	AY.95	0.000761
M	124	L124L	ctC	ctT	1	1	AY.97	0.001701
M	124	L124I	Ctc	Atc	1	1	AY.98.1	0.000048
M	124	L124L	ctC	ctT	1	1	AY.99	0.001049
M	124	L124F	Ctc	Ttc	1	1	AY.99.2	0.000092
M	124	L124L	ctC	ctT	1	1	AZ.3	0.00152
M	124	L124del1	cTc	c-c	1	1	B.1	0.000009
M	124	L124del	CTC	---	1	1	B.1	0.000009
M	124	L124V	CtC	GtT	1	1	B.1.1	0.000018
M	124	L124I	Ctc	Atc	1	1	B.1.1	0.000018
M	124	L124L	ctC	ctT	1	1	B.1.1.137	0.0125
M	124	L124L	ctC	ctT	1	1	B.1.1.15	0.013514
M	124	L124L	ctC	ctT	1	1	B.1.1.157	0.000913
M	124	L124L	ctC	ctT	1	1	B.1.1.186	0.003436
M	124	L124L	ctC	ctT	1	1	B.1.1.196	0.005714
M	124	L124L	ctC	ctT	1	1	B.1.1.207	0.001182
M	124	L124L	ctC	ctT	1	1	B.1.1.216	0.00089
M	124	L124del	CTC	---	1	1	B.1.1.221	0.010101
M	124	L124L	ctC	ctT	1	1	B.1.1.231	0.003096
M	124	L124V	Ctc	Gtc	1	1	B.1.1.232	0.001815
M	124	L124L	ctC	ctT	1	1	B.1.1.234	0.012048
M	124	L124L	ctC	ctT	1	1	B.1.1.25	0.000569
M	124	L124L	ctC	ctT	1	1	B.1.1.273	0.006757
M	124	L124L	ctC	ctT	1	1	B.1.1.279	0.001121
M	124	L124L	ctC	ctT	1	1	B.1.1.294	0.001266
M	124	L124L	ctC	ctT	1	1	B.1.1.305	0.003861
M	124	L124I	Ctc	Atc	1	1	B.1.1.311	0.000358
M	124	L124I	Ctc	Atc	1	1	B.1.1.317	0.000412
M	124	L124I	Ctc	Atc	1	1	B.1.1.318	0.000302
M	124	L124L	ctC	ctT	1	1	B.1.1.326	0.001761
M	124	L124L	ctC	ctA	1	1	B.1.1.328	0.016949
M	124	L124L	ctC	ctT	1	1	B.1.1.331	0.011628
M	124	L124L	ctC	ctT	1	1	B.1.1.348	0.000796
M	124	L124L	ctC	ctT	1	1	B.1.1.37	0.000193
M	124	L124L	ctC	ctT	1	1	B.1.1.398	0.003226
M	124	L124L	ctC	ctT	1	1	B.1.1.4	0.002976
M	124	L124L	ctC	ctT	1	1	B.1.1.404	0.015873
M	124	L124L	ctC	ctT	1	1	B.1.1.41	0.006329
M	124	L124del	CTC	---	1	1	B.1.1.420	0.001006
M	124	L124P	cTc	cCc	1	1	B.1.1.433	0.001425
M	124	L124L	ctC	ctT	1	1	B.1.1.442	0.018519
M	124	L124L	ctC	ctT	1	1	B.1.1.448	0.002033
M	124	L124L	ctC	ctT	1	1	B.1.1.486	0.001577
M	124	L124L	ctC	ctT	1	1	B.1.1.51	0.001718
M	124	L124F	Ctc	Ttc	1	1	B.1.1.519	0.00004
M	124	L124I	Ctc	Atc	1	1	B.1.1.519	0.00004
M	124	L124L	ctC	ctT	1	1	B.1.1.53	0.013699
M	124	L124V	Ctc	Gtc	1	1	B.1.1.53	0.013699
M	124	L124L	ctC	ctT	1	1	B.1.1.61	0.008772
M	124	L124L	ctC	ctT	1	1	B.1.1.63	0.000386
M	124	L124X	CTC	TAA	1	1	B.1.1.7	0.000001
M	124	L124E	CTC	GAA	1	1	B.1.1.7	0.000001
M	124	L124L	ctC	ctT	1	1	B.1.1.70	0.000341
M	124	L124F	Ctc	Ttc	1	1	B.1.1.71	0.006061
M	124	L124L	ctC	ctA	1	1	B.1.104	0.00369
M	124	L124L	ctC	ctT	1	1	B.1.147	0.000756
M	124	L124F	Ctc	Ttc	1	1	B.1.160	0.000031
M	124	L124F	Ctc	Ttc	1	1	B.1.160.23	0.004831
M	124	L124F	Ctc	Ttc	1	1	B.1.170	0.00431
M	124	L124R	cTc	cGc	1	1	B.1.177	0.000013
M	124	L124P	cTc	cCc	1	1	B.1.177	0.000013
M	124	L124F	Ctc	Ttc	1	1	B.1.177.18	0.00116
M	124	L124L	ctC	ctT	1	1	B.1.177.19	0.001431
M	124	L124I	Ctc	Atc	1	1	B.1.177.4	0.000211
M	124	L124L	ctC	ctT	1	1	B.1.177.43	0.001477
M	124	L124L	ctC	ctT	1	1	B.1.177.52	0.001757
M	124	L124L	ctC	ctT	1	1	B.1.177.57	0.000281
M	124	L124F	Ctc	Ttc	1	1	B.1.177.57	0.000281
M	124	L124L	ctC	ctT	1	1	B.1.177.60	0.000218
M	124	L124L	ctC	ctT	1	1	B.1.177.62	0.001192
M	124	L124L	ctC	ctT	1	1	B.1.177.69	0.001484
M	124	L124L	ctC	ctG	1	1	B.1.177.72	0.00339
M	124	L124L	ctC	ctT	1	1	B.1.177.77	0.000726
M	124	L124L	ctC	ctT	1	1	B.1.177.85	0.005435
M	124	L124F	Ctc	Ttc	1	1	B.1.194	0.04
M	124	L124del	CTC	---	1	1	B.1.2	0.000009
M	124	L124del1	cTc	c-c	1	1	B.1.2	0.000009
M	124	L124T	CTc	ACc	1	1	B.1.2	0.000009
M	124	L124L	ctC	ctA	1	1	B.1.206	0.000816
M	124	L124L	ctC	ctT	1	1	B.1.214	0.003663
M	124	L124F	Ctc	Ttc	1	1	B.1.221	0.000071
M	124	L124I	Ctc	Atc	1	1	B.1.221	0.000071
M	124	L124F	Ctc	Ttc	1	1	B.1.234	0.000132
M	124	L124L	ctC	ctT	1	1	B.1.235	0.002519
M	124	L124L	ctC	ctT	1	1	B.1.237	0.004975
M	124	L124I	Ctc	Atc	1	1	B.1.243	0.00007
M	124	L124del	CTC	---	1	1	B.1.258.11	0.000396
M	124	L124L	ctC	ctT	1	1	B.1.284	0.013158
M	124	L124L	ctC	ctG	1	1	B.1.333	0.010526
M	124	L124L	ctC	ctT	1	1	B.1.349	0.000715
M	124	L124I	Ctc	Atc	1	1	B.1.351	0.00003
M	124	L124F	Ctc	Ttc	1	1	B.1.351	0.00003
M	124	L124L	ctC	ctT	1	1	B.1.351.2	0.000303
M	124	L124L	ctC	ctT	1	1	B.1.351.3	0.000876
M	124	L124L	ctC	ctT	1	1	B.1.351.5	0.0006
M	124	L124L	ctC	ctT	1	1	B.1.36.10	0.004785
M	124	L124L	ctC	ctT	1	1	B.1.36.22	0.001208
M	124	L124del1	ctC	ct-	1	1	B.1.36.29	0.000517
M	124	L124W	CTC	TGG	1	1	B.1.369	0.000285
M	124	L124C	CTc	TGc	1	1	B.1.369	0.000285
M	124	L124F	Ctc	Ttc	1	1	B.1.369	0.000285
M	124	L124L	ctC	ctT	1	1	B.1.375	0.00082
M	124	L124L	ctC	ctT	1	1	B.1.380	0.006623
M	124	L124L	ctC	ctT	1	1	B.1.389	0.001002
M	124	L124L	ctC	ctT	1	1	B.1.396	0.000706
M	124	L124P	cTc	cCc	1	1	B.1.417	0.028571
M	124	L124L	ctC	ctT	1	1	B.1.421	0.007463
M	124	L124L	ctC	ctT	1	1	B.1.422	0.000812
M	124	L124L	ctC	ctT	1	1	B.1.425	0.002994
M	124	L124del	CTC	---	1	1	B.1.427	0.00005
M	124	L124I	Ctc	Atc	1	1	B.1.429	0.000024
M	124	L124L	ctC	ctT	1	1	B.1.453	0.003236
M	124	L124L	ctC	ctT	1	1	B.1.466.2	0.000391
M	124	L124L	ctC	ctT	1	1	B.1.469	0.00361
M	124	L124F	Ctc	Ttc	1	1	B.1.470	0.001404
M	124	L124L	ctC	ctT	1	1	B.1.505	0.004386
M	124	L124I	Ctc	Atc	1	1	B.1.507	0.011236
M	124	L124L	ctC	ctT	1	1	B.1.507	0.011236
M	124	L124L	ctC	ctT	1	1	B.1.509	0.000866
M	124	L124F	Ctc	Ttc	1	1	B.1.517	0.000427
M	124	L124L	ctC	ctT	1	1	B.1.530	0.007143
M	124	L124L	ctC	ctT	1	1	B.1.532	0.006211
M	124	L124L	ctC	ctT	1	1	B.1.565	0.00081
M	124	L124F	Ctc	Ttc	1	1	B.1.566	0.019231
M	124	L124L	ctC	ctT	1	1	B.1.568	0.001111
M	124	L124F	CtC	TtT	1	1	B.1.574	0.002151
M	124	L124L	ctC	ctT	1	1	B.1.576	0.000907
M	124	L124L	ctC	ctT	1	1	B.1.582	0.000491
M	124	L124F	Ctc	Ttc	1	1	B.1.582	0.000491
M	124	L124L	ctC	ctT	1	1	B.1.589	0.007576
M	124	L124P	cTc	cCc	1	1	B.1.617.2	0.000004
M	124	L124del1	ctC	ct-	1	1	B.1.617.2	0.000004
M	124	L124F	Ctc	Ttc	1	1	B.1.621	0.000089
M	124	L124L	ctC	ctT	1	1	B.1.625	0.002353
M	124	L124R	cTc	cGc	1	1	B.1.637	0.000073
M	124	L124L	ctC	ctT	1	1	B.1.9.4	0.006135
M	124	L124L	ctC	ctT	1	1	B.31	0.003731
M	124	L124L	ctC	ctT	1	1	C.30	0.001727
M	124	L124F	Ctc	Ttc	1	1	C.36	0.000911
M	124	L124L	ctC	ctT	1	1	C.36	0.000911
M	124	L124L	ctC	ctT	1	1	C.36.3.1	0.002717
M	124	L124I	Ctc	Atc	1	1	D.2	0.000075
M	124	L124F	Ctc	Ttc	1	1	N.5	0.001767
M	124	L124F	Ctc	Ttc	1	1	P.1.1	0.000318
M	124	L124L	ctC	ctT	1	1	P.1.1	0.000318
M	124	L124F	Ctc	Ttc	1	1	P.1.12	0.000484
M	124	L124F	Ctc	Ttc	1	1	P.1.13	0.000898
M	124	L124L	ctC	ctT	1	1	P.1.16	0.000374
M	124	L124F	Ctc	Ttc	1	1	P.1.17	0.000162
M	124	L124L	ctC	ctT	1	1	P.1.2	0.001156
M	124	L124L	ctC	ctT	1	1	P.1.6	0.001946
M	124	L124I	Ctc	Atc	1	1	Q.1	0.000126
M	124	L124F	Ctc	Ttc	1	1	Q.3	0.000145
M	124	L124L	ctC	ctT	1	1	Q.4	0.000455
M	124	L124F	Ctc	Ttc	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.