CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 123

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M123P123PsynccAccG332728530.85752926889-26891
M123P123PsynccAccT33273520.10580126889-26891
M123P123PsynccAccC33271220.036669726889-26891
M123P123SnonsynCcaTca217217126889-26891
M123P123deldelCCA---9494126889-26891
M123P123LnonsyncCacTa70690.98571426889-26891
M123P123LnonsynCCATTG7010.014285726889-26891
M123P123TnonsynCcaAca30280.93333326889-26891
M123P123TnonsynCcAAcC3020.066666726889-26891
M123P123QnonsyncCacAa26250.96153826889-26891
M123P123QnonsyncCAcAG2610.038461526889-26891
M123P123AnonsynCcaGca530.626889-26891
M123P123AnonsynCcAGcC510.226889-26891
M123P123AnonsynCcAGcT510.226889-26891
M123P123RnonsyncCacGa11126889-26891
M123P123HnonsyncCAcAT11126889-26891
M123P123del1delCca-ca11126889-26891

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M123P123PccAccG28533327All0.000546
M123P123PccAccT3523327All0.000067
M123P123PccAccC1223327All0.000023
M123P123PccAccG26432643AY.680.723515
M123P123SCcaTca217217All0.000042
M123P123PccAccT108158AY.40.000168
M123P123PccAccC41158AY.40.000064
M123P123PccAccG9158AY.40.000014
M123P123PccAccT64142B.1.1.70.000057
M123P123PccAccG50142B.1.1.70.000045
M123P123PccAccC28142B.1.1.70.000025
M123P123delCCA---9494All0.000018
M123P123delCCA---7777B.1.177.210.005888
M123P123LcCacTa6970All0.000013
M123P123LCCATTG170All0
M123P123PccAccT5057B.1.20.00044
M123P123PccAccG657B.1.20.000053
M123P123PccAccC157B.1.20.000009
M123P123PccAccT5757B.1.6370.004165
M123P123PccAccG3546B.1.617.20.000132
M123P123PccAccT846B.1.617.20.00003
M123P123PccAccC346B.1.617.20.000011
M123P123PccAccT3636AY.290.000568
M123P123TCcaAca2830All0.000005
M123P123TCcAAcC230All0
M123P123QcCacAa2526All0.000005
M123P123QcCAcAG126All0
M123P123PccAccG2626AY.30.000259
M123P123SCcaTca2626B.1.617.20.000098
M123P123PccAccC1021B.10.000092
M123P123PccAccT921B.10.000082
M123P123PccAccG221B.10.000018
M123P123SCcaTca2020AY.40.000031
M123P123SCcaTca1818AD.20.003941
M123P123SCcaTca1515B.1.1.70.000013
M123P123PccAccG1214AY.430.000053
M123P123PccAccC214AY.430.000009
M123P123SCcaTca1212AY.1030.000075
M123P123TCcaAca1111AY.430.000049
M123P123PccAccC1111B.1.1.1530.012048
M123P123PccAccC1111B.1.3510.000327
M123P123SCcaTca1111P.10.000173
M123P123SCcaTca1010AY.250.00006
M123P123LcCacTa1010AY.40.000016
M123P123SCcaTca1010AY.46.60.000722
M123P123SCcaTca99AY.1000.000414
M123P123LcCacTa99AY.46.60.00065
M123P123PccAccG89B.1.4290.000188
M123P123PccAccT19B.1.4290.000024
M123P123LcCacTa99L.30.031915
M123P123delCCA---88B.1.1.70.000007
M123P123PccAccG68P.10.000095
M123P123PccAccT28P.10.000032
M123P123SCcaTca77AY.1020.000186
M123P123SCcaTca77AY.1100.000789
M123P123PccAccG57AY.250.00003
M123P123PccAccT17AY.250.000006
M123P123PccAccC17AY.250.000006
M123P123LcCacTa77B.1.1.1860.024055
M123P123LcCacTa77B.1.1.70.000006
M123P123LcCacTa77B.1.36.350.018229
M123P123SCcaTca77B.1.4290.000165
M123P123SCcaTca66AY.430.000027
M123P123QcCacAa66B.10.000055
M123P123ACcaGca35All0.000001
M123P123ACcAGcT15All0
M123P123ACcAGcC15All0
M123P123PccAccG35AY.440.000018
M123P123PccAccT15AY.440.000006
M123P123PccAccC15AY.440.000006
M123P123SCcaTca55AY.50.000103
M123P123LcCacTa55B.10.000046
M123P123PccAccG44AY.1020.000106
M123P123QcCacAa44AY.250.000024
M123P123SCcaTca44AY.390.000099
M123P123SCcaTca44AY.440.000024
M123P123PccAccG44B.1.1080.023256
M123P123SCcaTca44B.1.1770.000053
M123P123PccAccT23AY.200.000078
M123P123PccAccG13AY.200.000039
M123P123QcCacAa33AY.290.000047
M123P123PccAccG33AY.340.000291
M123P123TCcaAca33AY.440.000018
M123P123PccAccT23AY.450.000243
M123P123PccAccG13AY.450.000122
M123P123SCcaTca33AY.9.20.00011
M123P123SCcaTca33B.10.000027
M123P123TCcaAca33B.10.000027
M123P123PccAccT13B.1.10.000018
M123P123PccAccC13B.1.10.000018
M123P123PccAccG13B.1.10.000018
M123P123PccAccG23B.1.1.2140.000111
M123P123PccAccC13B.1.1.2140.000055
M123P123PccAccT13B.1.2210.000071
M123P123PccAccC13B.1.2210.000071
M123P123PccAccG13B.1.2210.000071
M123P123LcCacTa22A.280.005291
M123P123PccAccG22AY.1130.000285
M123P123SCcaTca22AY.116.10.000623
M123P123PccAccG22AY.1170.000169
M123P123SCcaTca22AY.1180.000125
M123P123TCcaAca22AY.290.000032
M123P123SCcaTca22AY.30.00002
M123P123SCcaTca22AY.340.000194
M123P123SCcaTca22AY.350.000466
M123P123PccAccT12AY.390.000025
M123P123PccAccG12AY.390.000025
M123P123QcCacAa22AY.440.000012
M123P123PccAccG22AY.750.000112
M123P123PccAccG22AY.980.000158
M123P123SCcaTca22B.1.1.2140.000111
M123P123PccAccC12B.1.3990.001934
M123P123PccAccG12B.1.3990.001934
M123P123PccAccC12B.1.4170.028571
M123P123PccAccG12B.1.4170.028571
M123P123SCcaTca22Q.20.001227
M123P123PccAccC110.055556
M123P123QcCacAa11A0.000387
M123P123del1Cca-ca11All0
M123P123HcCAcAT11All0
M123P123RcCacGa11All0
M123P123PccAccC11AY.100.00053
M123P123PccAccG11AY.1000.000046
M123P123QcCacAa11AY.1020.000027
M123P123TCcaAca11AY.1030.000006
M123P123LcCacTa11AY.1030.000006
M123P123QcCAcAG11AY.1030.000006
M123P123SCcaTca11AY.1090.00074
M123P123SCcaTca11AY.1110.000183
M123P123PccAccT11AY.1160.000287
M123P123SCcaTca11AY.1170.000085
M123P123RcCacGa11AY.1190.000035
M123P123ACcaGca11AY.120.000316
M123P123PccAccG11AY.120.20.001285
M123P123SCcaTca11AY.140.000088
M123P123PccAccG11AY.160.00038
M123P123LcCacTa11AY.200.000039
M123P123QcCacAa11AY.200.000039
M123P123QcCacAa11AY.230.00007
M123P123TCcaAca11AY.230.00007
M123P123SCcaTca11AY.23.10.000417
M123P123LcCacTa11AY.250.000006
M123P123delCCA---11AY.260.000028
M123P123PccAccC11AY.260.000028
M123P123PccAccG11AY.270.000065
M123P123PccAccT11AY.29.10.000221
M123P123ACcAGcT11AY.30.00001
M123P123PccAccG11AY.330.000067
M123P123SCcaTca11AY.330.000067
M123P123TCcaAca11AY.40.000002
M123P123QcCacAa11AY.40.000002
M123P123PccAccG11AY.4.30.000842
M123P123SCcaTca11AY.420.00004
M123P123LcCacTa11AY.420.00004
M123P123PccAccC11AY.420.00004
M123P123QcCacAa11AY.430.000004
M123P123LcCacTa11AY.440.000006
M123P123ACcAGcC11AY.440.000006
M123P123delCCA---11AY.440.000006
M123P123PccAccT11AY.46.20.000635
M123P123TCcAAcC11AY.46.20.000635
M123P123QcCacAa11AY.46.60.000072
M123P123PccAccG11AY.50.000021
M123P123PccAccG11AY.530.000288
M123P123TCcaAca11AY.540.000095
M123P123PccAccG11AY.580.000907
M123P123PccAccG11AY.590.00053
M123P123PccAccG11AY.60.000041
M123P123SCcaTca11AY.610.000105
M123P123LcCacTa11AY.70.000196
M123P123LcCacTa11AY.7.10.000113
M123P123PccAccG11AY.75.10.00018
M123P123SCcaTca11AY.75.10.00018
M123P123SCcaTca11AY.810.001992
M123P123TCcAAcC11AY.820.001357
M123P123LcCacTa11AY.840.000437
M123P123QcCacAa11AY.90.000068
M123P123delCCA---11AY.90.000068
M123P123PccAccG11AY.9.20.000037
M123P123LcCacTa11AY.9.20.000037
M123P123ACcaGca11AY.98.10.000048
M123P123delCCA---11B.10.000009
M123P123QcCacAa11B.1.10.000018
M123P123SCcaTca11B.1.10.000018
M123P123del1Cca-ca11B.1.10.000018
M123P123HcCAcAT11B.1.10.000018
M123P123delCCA---11B.1.1.2210.010101
M123P123delCCA---11B.1.1.4200.001006
M123P123TCcaAca11B.1.1.5190.00004
M123P123ACcaGca11B.1.1.520.012195
M123P123PccAccG11B.1.1.5280.004808
M123P123TCcaAca11B.1.1.70.000001
M123P123PccAccT11B.1.1600.000031
M123P123PccAccC11B.1.1770.000013
M123P123PccAccG11B.1.177.170.000821
M123P123PccAccT11B.1.177.210.000076
M123P123QcCacAa11B.1.177.210.000076
M123P123LCCATTG11B.1.177.210.000076
M123P123SCcaTca11B.1.177.230.003236
M123P123SCcaTca11B.1.177.310.011494
M123P123LcCacTa11B.1.177.430.001477
M123P123LcCacTa11B.1.177.450.000381
M123P123PccAccG11B.1.177.870.000728
M123P123SCcaTca11B.1.20.000009
M123P123delCCA---11B.1.20.000009
M123P123SCcaTca11B.1.2210.000071
M123P123PccAccC11B.1.2580.000067
M123P123delCCA---11B.1.258.110.000396
M123P123SCcaTca11B.1.3360.002439
M123P123SCcaTca11B.1.3510.00003
M123P123PccAccT11B.1.3560.001727
M123P123PccAccG11B.1.36.290.000517
M123P123delCCA---11B.1.4270.00005
M123P123SCcaTca11B.1.4870.019608
M123P123PccAccG11B.1.4970.000315
M123P123PccAccC11B.1.5240.001406
M123P123LcCacTa11B.1.5260.000024
M123P123PccAccT11B.1.5740.002151
M123P123PccAccT11B.1.5760.000907
M123P123PccAccC11B.1.5960.000087
M123P123TCcaAca11B.1.5960.000087
M123P123PccAccG11B.1.617.10.000129
M123P123PccAccG11B.1.6210.000089
M123P123TCcaAca11B.1.6210.000089
M123P123TCcaAca11B.1.6370.000073
M123P123SCcaTca11D.20.000075
M123P123LcCacTa11D.20.000075
M123P123SCcaTca11P.1.100.000269
M123P123SCcaTca11P.20.000187
M123P123SCcaTca11Q.80.000165