CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 121

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M121N121NsynaaCaaT1341413414126883-26885
M121N121KnonsynaaCaaA8368350.99880426883-26885
M121N121KnonsynaaCaaG83610.0011961726883-26885
M121N121deldelAAC---9393126883-26885
M121N121SnonsynaAcaGc3737126883-26885
M121N121DnonsynAacGac44126883-26885
M121N121del1delAac-ac420.526883-26885
M121N121del1delAaCNa-410.2526883-26885
M121N121del1delAaCGa-410.2526883-26885
M121N121TnonsynaAcaCc320.66666726883-26885
M121N121TnonsynaACaCA310.33333326883-26885
M121N121InonsynaAcaTc210.526883-26885
M121N121InonsynaACaTA210.526883-26885
M121N121RnonsynAACCGT11126883-26885
M121N121YnonsynAacTac11126883-26885
M121N121HnonsynAaCCaT11126883-26885
M121N121GnonsynAAcGGc11126883-26885
M121N121XnonsynAaCTaG11126883-26885

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M121N121NaaCaaT1341413414All0.002566
M121N121NaaCaaT26722672AY.680.731454
M121N121NaaCaaT18041804AY.40.002808
M121N121NaaCaaT10331033B.1.1.70.000925
M121N121NaaCaaT935935B.10.008564
M121N121KaaCaaA835836All0.00016
M121N121KaaCaaG1836All0
M121N121NaaCaaT716716AY.290.011294
M121N121NaaCaaT449449C.370.052112
M121N121KaaCaaA386386B.1.351.20.116793
M121N121NaaCaaT362362B.1.177.630.978378
M121N121NaaCaaT361361AY.360.053505
M121N121NaaCaaT347347B.1.617.20.001307
M121N121NaaCaaT336336B.1.1.5190.013343
M121N121NaaCaaT318318AY.250.001913
M121N121NaaCaaT257257B.1.1770.003384
M121N121NaaCaaT250250B.1.5950.06524
M121N121NaaCaaT215215B.1.6180.866935
M121N121KaaCaaA211211B.1.3510.006272
M121N121NaaCaaT195195B.1.20.001717
M121N121NaaCaaT190190P.10.002993
M121N121NaaCaaT131131AY.1020.003473
M121N121NaaCaaT130130AY.30.001293
M121N121NaaCaaT128128B.1.2800.914286
M121N121NaaCaaT125125AY.480.05814
M121N121NaaCaaT114114AY.440.000694
M121N121NaaCaaT109109B.1.5260.002562
M121N121NaaCaaT103103AY.430.000456
M121N121NaaCaaT9494AY.1030.000584
M121N121delAAC---9393All0.000018
M121N121NaaCaaT8888AY.240.037931
M121N121NaaCaaT8888AY.260.002491
M121N121NaaCaaT8585B.1.2430.005915
M121N121NaaCaaT8383AY.9.10.006949
M121N121KaaCaaA8282B.1.1770.00108
M121N121NaaCaaT7777AY.1200.002863
M121N121delAAC---7575B.1.177.210.005735
M121N121NaaCaaT7474AY.46.40.012173
M121N121NaaCaaT6666AY.50.001363
M121N121NaaCaaT5555B.1.10.000998
M121N121NaaCaaT5555B.1.2210.003907
M121N121NaaCaaT5050AY.470.001555
M121N121NaaCaaT4747AY.1000.002162
M121N121NaaCaaT4747AY.9.20.001726
M121N121KaaCaaA4141B.1.6220.532468
M121N121NaaCaaT4040B.1.1.3180.01207
M121N121SaAcaGc3737All0.000007
M121N121NaaCaaT3636B.1.5960.003137
M121N121NaaCaaT3434AY.530.009776
M121N121NaaCaaT3232AY.590.016949
M121N121NaaCaaT3232AY.880.028294
M121N121NaaCaaT3232B.1.4290.000753
M121N121NaaCaaT3131A.10.008737
M121N121NaaCaaT3131B.1.4270.001565
M121N121KaaCaaA3030B.1.1.70.000027
M121N121NaaCaaT3030B.400.010929
M121N121NaaCaaT2727AY.390.000667
M121N121SaAcaGc2525AY.40.000039
M121N121KaaCaaA2424B.1.1600.000749
M121N121NaaCaaT2323B.1.177.620.027414
M121N121NaaCaaT2222AY.740.002544
M121N121NaaCaaT1919B.1.4670.76
M121N121NaaCaaT1818AY.1190.000636
M121N121NaaCaaT1717B.1.5250.001924
M121N121NaaCaaT1717B.1.5820.008342
M121N121NaaCaaT1616AY.4.20.000347
M121N121NaaCaaT1515B.1.1.3170.006175
M121N121NaaCaaT1414B.1.1600.000437
M121N121NaaCaaT1313AY.1170.001099
M121N121NaaCaaT1313AY.98.10.00063
M121N121NaaCaaT1313B.1.1.3970.029279
M121N121NaaCaaT1313B.1.5510.016774
M121N121NaaCaaT1212AY.200.000466
M121N121NaaCaaT1212AY.610.001257
M121N121NaaCaaT1212AY.750.000672
M121N121KaaCaaA1212B.1.160.180.087591
M121N121NaaCaaT1212B.1.2580.000799
M121N121NaaCaaT1111AY.46.20.006989
M121N121NaaCaaT1111B.1.1.2840.001181
M121N121NaaCaaT1111B.1.360.001605
M121N121NaaCaaT1010AY.420.000402
M121N121NaaCaaT1010AY.46.60.000722
M121N121NaaCaaT1010AY.75.10.001803
M121N121NaaCaaT1010B.1.3510.000297
M121N121NaaCaaT1010B.1.5770.006873
M121N121NaaCaaT1010B.1.6210.000885
M121N121NaaCaaT1010P.1.150.002323
M121N121NaaCaaT99AY.1180.000564
M121N121NaaCaaT99AY.230.000628
M121N121NaaCaaT99AY.330.000601
M121N121KaaCaaA99AY.400.008679
M121N121delAAC---99B.1.1.70.000008
M121N121NaaCaaT99B.1.258.170.000936
M121N121NaaCaaT99B.1.3690.002567
M121N121NaaCaaT88AY.29.10.001764
M121N121NaaCaaT88AY.640.004762
M121N121NaaCaaT88B.1.36.290.004139
M121N121NaaCaaT88B.1.438.10.000858
M121N121NaaCaaT88B.1.6370.000585
M121N121NaaCaaT88Q.80.001319
M121N121NaaCaaT88R.10.00072
M121N121NaaCaaT77AY.99.20.000645
M121N121KaaCaaA77AZ.50.024561
M121N121NaaCaaT77B.1.466.20.002739
M121N121NaaCaaT77P.1.70.002235
M121N121NaaCaaT66AY.1100.000676
M121N121NaaCaaT66AY.1160.001721
M121N121NaaCaaT66AY.140.000528
M121N121NaaCaaT66AY.690.00112
M121N121KaaCaaA66B.1.1.3530.125
M121N121NaaCaaT66B.1.2340.000792
M121N121NaaCaaT66B.1.2400.001293
M121N121NaaCaaT66B.1.4220.004874
M121N121NaaCaaT66B.1.4680.034286
M121N121NaaCaaT66Q.30.00087
M121N121NaaCaaT55AY.1130.000712
M121N121NaaCaaT55AY.340.000485
M121N121NaaCaaT55AY.39.10.000198
M121N121NaaCaaT55AY.410.00147
M121N121NaaCaaT55AY.5.40.001384
M121N121NaaCaaT55B.1.1.2140.000277
M121N121NaaCaaT55B.1.1.2160.004452
M121N121NaaCaaT55B.1.1.2910.003712
M121N121NaaCaaT55B.1.1.700.001705
M121N121NaaCaaT55B.1.110.30.003592
M121N121NaaCaaT55B.1.351.20.001513
M121N121KaaCaaA55B.1.416.10.007812
M121N121SaAcaGc55B.1.617.20.000019
M121N121NaaCaaT55P.20.000933
M121N121DAacGac44All0.000001
M121N121del1Aac-ac24All0
M121N121del1AaCGa-14All0
M121N121del1AaCNa-14All0
M121N121NaaCaaT44AY.1210.000541
M121N121NaaCaaT44AY.450.000487
M121N121NaaCaaT44AY.70.000784
M121N121NaaCaaT44AY.99.10.006211
M121N121NaaCaaT44B.1.1.1330.033898
M121N121NaaCaaT44B.1.1.3060.001754
M121N121NaaCaaT44B.1.3110.001098
M121N121NaaCaaT44B.1.3750.003279
M121N121NaaCaaT44B.1.4210.029851
M121N121NaaCaaT44B.1.617.10.000516
M121N121NaaCaaT44C.37.10.010471
M121N121NaaCaaT44D.20.0003
M121N121NaaCaaT44P.1.140.000191
M121N121NaaCaaT44S.10.019802
M121N121TaAcaCc23All0
M121N121TaACaCA13All0
M121N121NaaCaaT33AY.460.000312
M121N121NaaCaaT33AY.46.50.000595
M121N121NaaCaaT33AY.90.000203
M121N121NaaCaaT33AY.980.000237
M121N121KaaCaaA23B.10.000018
M121N121KaaCaaG13B.10.000009
M121N121NaaCaaT33B.1.1.10.00098
M121N121NaaCaaT33B.1.1.2220.000612
M121N121NaaCaaT33B.1.1.250.001706
M121N121NaaCaaT33B.1.1.280.000934
M121N121NaaCaaT33B.1.1.330.001263
M121N121NaaCaaT33B.1.1.390.001529
M121N121NaaCaaT33B.1.177.230.009709
M121N121NaaCaaT33B.1.177.790.007026
M121N121NaaCaaT33B.1.177.800.005736
M121N121NaaCaaT33B.1.2180.015464
M121N121NaaCaaT33B.1.36.310.005254
M121N121NaaCaaT33B.1.3990.005803
M121N121KaaCaaA33B.1.438.20.057692
M121N121NaaCaaT33B.1.4710.008197
M121N121NaaCaaT33B.1.5610.001191
M121N121KaaCaaA33B.1.617.20.000011
M121N121NaaCaaT33B.4.70.030303
M121N121NaaCaaT22A.270.003311
M121N121NaaCaaT22AD.20.000438
M121N121NaaCaaT22AE.80.000978
M121N121IaACaTA12All0
M121N121IaAcaTc12All0
M121N121NaaCaaT22AY.10.000791
M121N121KaaCaaA22AY.1010.000981
M121N121NaaCaaT22AY.116.10.000623
M121N121NaaCaaT22AY.120.10.000642
M121N121NaaCaaT22AY.130.000322
M121N121NaaCaaT22AY.4.2.10.000298
M121N121NaaCaaT22AY.4.40.000818
M121N121NaaCaaT22AY.4.50.000215
M121N121NaaCaaT22AY.400.001929
M121N121NaaCaaT22AY.5.30.000675
M121N121NaaCaaT22AY.580.001815
M121N121NaaCaaT22AY.60.000082
M121N121NaaCaaT22AY.700.000417
M121N121NaaCaaT22AY.910.001461
M121N121NaaCaaT22AY.920.000575
M121N121NaaCaaT22B0.000256
M121N121KaaCaaA22B.1.10.000036
M121N121NaaCaaT22B.1.1.1290.018349
M121N121NaaCaaT22B.1.1.3110.000716
M121N121NaaCaaT22B.1.1.3890.012121
M121N121SaAcaGc22B.1.1.70.000002
M121N121SaAcaGc22B.1.1770.000026
M121N121NaaCaaT22B.1.177.600.000437
M121N121NaaCaaT22B.1.177.770.001452
M121N121NaaCaaT22B.1.36.370.005556
M121N121NaaCaaT22B.1.36.380.003284
M121N121NaaCaaT22B.1.3890.002004
M121N121NaaCaaT22B.1.4280.002041
M121N121NaaCaaT22B.1.4700.002809
M121N121NaaCaaT22B.1.5070.022472
M121N121NaaCaaT22B.1.5170.000854
M121N121NaaCaaT22B.1.5750.000607
M121N121NaaCaaT22P.1.100.000539
M121N121NaaCaaT22P.1.120.000968
M121N121NaaCaaT22P.1.40.001953
M121N121NaaCaaT11A0.000387
M121N121NaaCaaT11A.2.30.004739
M121N121NaaCaaT11A.2.50.000499
M121N121NaaCaaT11A.2.5.10.004808
M121N121RAACCGT11All0
M121N121XAaCTaG11All0
M121N121HAaCCaT11All0
M121N121GAAcGGc11All0
M121N121YAacTac11All0
M121N121NaaCaaT11AU.10.001266
M121N121NaaCaaT11AU.30.00211
M121N121NaaCaaT11AY.100.00053
M121N121NaaCaaT11AY.1060.000335
M121N121NaaCaaT11AY.1080.001103
M121N121NaaCaaT11AY.1110.000183
M121N121SaAcaGc11AY.1190.000035
M121N121IaACaTA11AY.120.10.000321
M121N121NaaCaaT11AY.120.20.001285
M121N121NaaCaaT11AY.160.00038
M121N121NaaCaaT11AY.16.10.00047
M121N121delAAC---11AY.260.000028
M121N121NaaCaaT11AY.270.000065
M121N121NaaCaaT11AY.3.10.000085
M121N121NaaCaaT11AY.320.000532
M121N121NaaCaaT11AY.350.000233
M121N121TaAcaCc11AY.40.000002
M121N121NaaCaaT11AY.4.10.000737
M121N121NaaCaaT11AY.4.30.000842
M121N121del1AaCGa-11AY.440.000006
M121N121HAaCCaT11AY.440.000006
M121N121RAACCGT11AY.440.000006
M121N121NaaCaaT11AY.46.10.001027
M121N121TaAcaCc11AY.46.60.000072
M121N121KaaCaaA11AY.50.000021
M121N121NaaCaaT11AY.540.000095
M121N121NaaCaaT11AY.550.000917
M121N121NaaCaaT11AY.630.000387
M121N121NaaCaaT11AY.670.000464
M121N121NaaCaaT11AY.790.001211
M121N121NaaCaaT11AY.850.000427
M121N121NaaCaaT11AY.860.00083
M121N121delAAC---11AY.90.000068
M121N121NaaCaaT11AY.960.002075
M121N121SaAcaGc11AY.98.10.000048
M121N121NaaCaaT11AZ.20.000821
M121N121delAAC---11B.10.000009
M121N121del1Aac-ac11B.10.000009
M121N121DAacGac11B.1.10.000018
M121N121TaACaCA11B.1.10.000018
M121N121NaaCaaT11B.1.1.100.001115
M121N121NaaCaaT11B.1.1.1570.000913
M121N121NaaCaaT11B.1.1.1820.090909
M121N121NaaCaaT11B.1.1.1890.001513
M121N121delAAC---11B.1.1.2210.010101
M121N121NaaCaaT11B.1.1.2550.00303
M121N121NaaCaaT11B.1.1.2630.001558
M121N121NaaCaaT11B.1.1.2770.000759
M121N121NaaCaaT11B.1.1.290.010309
M121N121NaaCaaT11B.1.1.3010.001179
M121N121NaaCaaT11B.1.1.3330.001076
M121N121NaaCaaT11B.1.1.3370.003597
M121N121NaaCaaT11B.1.1.3480.000796
M121N121NaaCaaT11B.1.1.370.000193
M121N121NaaCaaT11B.1.1.4070.041667
M121N121NaaCaaT11B.1.1.4090.002833
M121N121delAAC---11B.1.1.4200.001006
M121N121NaaCaaT11B.1.1.4340.000349
M121N121NaaCaaT11B.1.1.4520.111111
M121N121NaaCaaT11B.1.1.500.000679
M121N121NaaCaaT11B.1.1.5170.006803
M121N121DAacGac11B.1.1.5190.00004
M121N121NaaCaaT11B.1.1.5230.001563
M121N121NaaCaaT11B.1.1.5260.003546
M121N121NaaCaaT11B.1.1.540.003021
M121N121NaaCaaT11B.1.1.580.005376
M121N121NaaCaaT11B.1.1.610.008772
M121N121NaaCaaT11B.1.1.630.000386
M121N121YAacTac11B.1.1.70.000001
M121N121NaaCaaT11B.1.1.830.00271
M121N121NaaCaaT11B.1.1100.004525
M121N121NaaCaaT11B.1.1400.018868
M121N121NaaCaaT11B.1.1470.000756
M121N121KaaCaaA11B.1.160.270.015152
M121N121NaaCaaT11B.1.160.330.004425
M121N121NaaCaaT11B.1.160.70.002079
M121N121NaaCaaT11B.1.1630.02439
M121N121GAAcGGc11B.1.1770.000013
M121N121DAacGac11B.1.1770.000013
M121N121NaaCaaT11B.1.177.120.000152
M121N121KaaCaaA11B.1.177.210.000076
M121N121del1AaCNa-11B.1.177.210.000076
M121N121KaaCaaA11B.1.177.370.027027
M121N121NaaCaaT11B.1.177.440.000519
M121N121NaaCaaT11B.1.177.510.004566
M121N121NaaCaaT11B.1.177.70.000165
M121N121NaaCaaT11B.1.177.730.000566
M121N121NaaCaaT11B.1.177.80.000752
M121N121KaaCaaA11B.1.177.810.000189
M121N121NaaCaaT11B.1.177.830.001481
M121N121NaaCaaT11B.1.1780.02381
M121N121NaaCaaT11B.1.1790.003759
M121N121NaaCaaT11B.1.1900.01
M121N121delAAC---11B.1.20.000009
M121N121SaAcaGc11B.1.2210.000071
M121N121KaaCaaA11B.1.2210.000071
M121N121NaaCaaT11B.1.2220.001692
M121N121delAAC---11B.1.258.110.000396
M121N121NaaCaaT11B.1.2600.003344
M121N121NaaCaaT11B.1.30.002618
M121N121NaaCaaT11B.1.3240.001605
M121N121XAaCTaG11B.1.3330.010526
M121N121NaaCaaT11B.1.3400.004292
M121N121NaaCaaT11B.1.3460.001311
M121N121KaaCaaA11B.1.351.30.000876
M121N121NaaCaaT11B.1.36.170.000494
M121N121NaaCaaT11B.1.36.180.00042
M121N121NaaCaaT11B.1.36.260.002857
M121N121NaaCaaT11B.1.36.360.000602
M121N121NaaCaaT11B.1.36.80.001
M121N121NaaCaaT11B.1.3620.001541
M121N121NaaCaaT11B.1.3670.000792
M121N121NaaCaaT11B.1.370.014706
M121N121NaaCaaT11B.1.3910.001127
M121N121NaaCaaT11B.1.3960.000706
M121N121NaaCaaT11B.1.4020.009804
M121N121NaaCaaT11B.1.4040.001302
M121N121NaaCaaT11B.1.4080.00369
M121N121NaaCaaT11B.1.4090.000781
M121N121NaaCaaT11B.1.4130.004255
M121N121NaaCaaT11B.1.4230.010204
M121N121delAAC---11B.1.4270.00005
M121N121KaaCaaA11B.1.428.20.033333
M121N121NaaCaaT11B.1.4560.003268
M121N121NaaCaaT11B.1.4600.017857
M121N121NaaCaaT11B.1.5090.000866
M121N121KaaCaaA11B.1.5250.000113
M121N121NaaCaaT11B.1.5270.003704
M121N121NaaCaaT11B.1.5300.007143
M121N121NaaCaaT11B.1.5580.004566
M121N121NaaCaaT11B.1.5760.000907
M121N121del1Aac-ac11B.1.5760.000907
M121N121NaaCaaT11B.1.5800.004065
M121N121NaaCaaT11B.1.5810.009434
M121N121NaaCaaT11B.1.5880.00091
M121N121NaaCaaT11B.1.6090.000479
M121N121NaaCaaT11B.1.6120.002653
M121N121NaaCaaT11B.1.6230.000536
M121N121NaaCaaT11B.1.6280.000352
M121N121NaaCaaT11B.1.88.10.004808
M121N121NaaCaaT11B.1.9.50.005682
M121N121NaaCaaT11B.110.005128
M121N121NaaCaaT11B.60.00091
M121N121NaaCaaT11C.160.00106
M121N121delAAC---11C.170.055556
M121N121NaaCaaT11C.360.000911
M121N121IaAcaTc11C.36.30.000567
M121N121DAacGac11D.20.000075
M121N121NaaCaaT11D.50.004975
M121N121NaaCaaT11N.30.005814
M121N121NaaCaaT11N.50.001767
M121N121NaaCaaT11P.1.170.000162
M121N121KaaCaaA11P.20.000187
M121N121NaaCaaT11Q.10.000126
M121N121NaaCaaT11U.30.003861