CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 117

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	117	N117N		syn	aaC	aaT	12809	12809	1	26871-26873
M	117	N117del		del	AAC	---	91	91	1	26871-26873
M	117	N117K		nonsyn	aaC	aaG	57	30	0.526316	26871-26873
M	117	N117K		nonsyn	aaC	aaA	57	27	0.473684	26871-26873
M	117	N117S		nonsyn	aAc	aGc	25	18	0.72	26871-26873
M	117	N117S		nonsyn	aAC	aGT	25	6	0.24	26871-26873
M	117	N117S		nonsyn	AAc	TCc	25	1	0.04	26871-26873
M	117	N117D		nonsyn	Aac	Gac	19	19	1	26871-26873
M	117	N117Y		nonsyn	Aac	Tac	10	9	0.9	26871-26873
M	117	N117Y		nonsyn	AaC	TaT	10	1	0.1	26871-26873
M	117	N117H		nonsyn	Aac	Cac	8	8	1	26871-26873
M	117	N117I		nonsyn	aAc	aTc	3	3	1	26871-26873
M	117	N117T		nonsyn	aAc	aCc	3	2	0.666667	26871-26873
M	117	N117T		nonsyn	aAC	aCG	3	1	0.333333	26871-26873
M	117	N117del2		del	AAc	--c	2	1	0.5	26871-26873
M	117	N117del2		del	aAC	a--	2	1	0.5	26871-26873
M	117	N117P		nonsyn	AAc	CCc	1	1	1	26871-26873
M	117	N117del1		del	aaC	aa-	1	1	1	26871-26873
M	117	N117F		nonsyn	AAc	TTc	1	1	1	26871-26873

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	117	N117N	aaC	aaT	12809	12809	All	0.00245
M	117	N117N	aaC	aaT	3843	3843	B.1.1.7	0.00344
M	117	N117N	aaC	aaT	2145	2145	AY.85	0.916275
M	117	N117N	aaC	aaT	959	959	AY.4	0.001493
M	117	N117N	aaC	aaT	831	831	AY.25	0.004998
M	117	N117N	aaC	aaT	502	502	B.1.2	0.00442
M	117	N117N	aaC	aaT	435	435	AY.44	0.002648
M	117	N117N	aaC	aaT	377	377	B.1.617.2	0.00142
M	117	N117N	aaC	aaT	193	193	AY.43	0.000855
M	117	N117N	aaC	aaT	158	158	AY.103	0.000981
M	117	N117N	aaC	aaT	156	156	B.1	0.001429
M	117	N117N	aaC	aaT	138	138	P.1	0.002174
M	117	N117N	aaC	aaT	94	94	AY.3	0.000935
M	117	N117del	AAC	---	91	91	All	0.000017
M	117	N117N	aaC	aaT	83	83	P.1.10.1	0.674797
M	117	N117N	aaC	aaT	82	82	AY.39	0.002026
M	117	N117N	aaC	aaT	80	80	B.1.429	0.001882
M	117	N117N	aaC	aaT	80	80	B.1.621	0.007082
M	117	N117N	aaC	aaT	79	79	B.1.1	0.001433
M	117	N117N	aaC	aaT	78	78	AY.26	0.002208
M	117	N117N	aaC	aaT	72	72	AY.120	0.002677
M	117	N117del	AAC	---	72	72	B.1.177.21	0.005506
M	117	N117N	aaC	aaT	71	71	B.1.234	0.009368
M	117	N117N	aaC	aaT	64	64	B.1.177	0.000843
M	117	N117N	aaC	aaT	62	62	B.1.36.27	0.047328
M	117	N117N	aaC	aaT	62	62	B.1.526	0.001457
M	117	N117N	aaC	aaT	61	61	B.1.575	0.018507
M	117	N117N	aaC	aaT	60	60	AY.42	0.002414
M	117	N117N	aaC	aaT	58	58	AY.102	0.001538
M	117	N117K	aaC	aaG	30	57	All	0.000006
M	117	N117K	aaC	aaA	27	57	All	0.000005
M	117	N117N	aaC	aaT	57	57	AY.63	0.02205
M	117	N117N	aaC	aaT	46	46	B.1.221	0.003268
M	117	N117N	aaC	aaT	42	42	B.1.36.29	0.021728
M	117	N117N	aaC	aaT	38	38	AY.47	0.001182
M	117	N117N	aaC	aaT	36	36	B.1.427	0.001818
M	117	N117N	aaC	aaT	35	35	B.1.243.1	0.777778
M	117	N117N	aaC	aaT	34	34	AY.29	0.000536
M	117	N117N	aaC	aaT	34	34	B.1.1.519	0.00135
M	117	N117N	aaC	aaT	33	33	B.1.351	0.000981
M	117	N117N	aaC	aaT	32	32	AY.54	0.003051
M	117	N117N	aaC	aaT	32	32	C.1.2	0.13617
M	117	N117N	aaC	aaT	31	31	AY.59	0.016419
M	117	N117N	aaC	aaT	30	30	AY.4.2	0.000651
M	117	N117N	aaC	aaT	30	30	B.1.596	0.002614
M	117	N117N	aaC	aaT	29	29	AY.5	0.000599
M	117	N117N	aaC	aaT	29	29	B.1.160	0.000904
M	117	N117N	aaC	aaT	27	27	AY.61	0.002829
M	117	N117N	aaC	aaT	27	27	B.1.478	0.317647
M	117	N117N	aaC	aaT	26	26	B.1.1.176	0.011424
M	117	N117N	aaC	aaT	26	26	B.1.258	0.00173
M	117	N117S	aAc	aGc	18	25	All	0.000003
M	117	N117S	aAC	aGT	6	25	All	0.000001
M	117	N117S	AAc	TCc	1	25	All	0
M	117	N117N	aaC	aaT	25	25	R.1	0.00225
M	117	N117N	aaC	aaT	24	24	AY.20	0.000933
M	117	N117N	aaC	aaT	23	23	AY.119	0.000812
M	117	N117N	aaC	aaT	23	23	AY.9.2	0.000845
M	117	N117N	aaC	aaT	23	23	B.1.1.214	0.001276
M	117	N117N	aaC	aaT	22	22	B.1.36	0.00321
M	117	N117N	aaC	aaT	22	22	C.37	0.002553
M	117	N117N	aaC	aaT	21	21	AY.121	0.002842
M	117	N117N	aaC	aaT	21	21	AY.33	0.001402
M	117	N117N	aaC	aaT	20	20	AY.117	0.00169
M	117	N117D	Aac	Gac	19	19	All	0.000004
M	117	N117N	aaC	aaT	18	18	B.1.1.28	0.005602
M	117	N117N	aaC	aaT	18	18	B.1.36.1	0.020525
M	117	N117N	aaC	aaT	17	17	AY.23	0.001186
M	117	N117N	aaC	aaT	17	17	AY.3.1	0.001449
M	117	N117N	aaC	aaT	17	17	AY.39.1	0.000673
M	117	N117N	aaC	aaT	17	17	B.1.1.306	0.007453
M	117	N117N	aaC	aaT	17	17	B.1.1.63	0.006559
M	117	N117N	aaC	aaT	17	17	B.1.177.81	0.003218
M	117	N117N	aaC	aaT	17	17	P.2	0.003173
M	117	N117N	aaC	aaT	17	17	P.4	0.064639
M	117	N117N	aaC	aaT	16	16	B.1.36.18	0.006723
M	117	N117N	aaC	aaT	16	16	B.1.36.38	0.026273
M	117	N117N	aaC	aaT	15	15	AY.37	0.004741
M	117	N117N	aaC	aaT	15	15	AY.99.2	0.001382
M	117	N117N	aaC	aaT	15	15	B.1.369	0.004278
M	117	N117N	aaC	aaT	15	15	B.1.470	0.021067
M	117	N117N	aaC	aaT	15	15	Q.8	0.002474
M	117	N117N	aaC	aaT	14	14	AY.30	0.00554
M	117	N117N	aaC	aaT	14	14	B.1.243	0.000974
M	117	N117N	aaC	aaT	13	13	B.1.1.291	0.009651
M	117	N117N	aaC	aaT	13	13	B.1.628	0.004581
M	117	N117N	aaC	aaT	11	11	AY.74	0.001272
M	117	N117N	aaC	aaT	11	11	D.2	0.000825
M	117	N117Y	Aac	Tac	9	10	All	0.000002
M	117	N117Y	AaC	TaT	1	10	All	0
M	117	N117N	aaC	aaT	10	10	AY.75	0.00056
M	117	N117N	aaC	aaT	10	10	B.1.525	0.001132
M	117	N117N	aaC	aaT	9	9	AY.100	0.000414
M	117	N117N	aaC	aaT	9	9	AY.58	0.008167
M	117	N117N	aaC	aaT	9	9	AY.79	0.010896
M	117	N117del	AAC	---	9	9	B.1.1.7	0.000008
M	117	N117K	aaC	aaA	6	9	B.1.1.7	0.000005
M	117	N117K	aaC	aaG	3	9	B.1.1.7	0.000003
M	117	N117H	Aac	Cac	8	8	All	0.000002
M	117	N117N	aaC	aaT	8	8	AY.34	0.000776
M	117	N117N	aaC	aaT	8	8	AY.98.1	0.000387
M	117	N117N	aaC	aaT	8	8	B.1.438.1	0.000858
M	117	N117N	aaC	aaT	7	7	AY.116	0.002007
M	117	N117N	aaC	aaT	7	7	AY.14	0.000616
M	117	N117D	Aac	Gac	7	7	AY.4	0.000011
M	117	N117K	aaC	aaA	4	7	AY.4	0.000006
M	117	N117K	aaC	aaG	3	7	AY.4	0.000005
M	117	N117N	aaC	aaT	7	7	AY.46	0.000729
M	117	N117N	aaC	aaT	7	7	AY.75.1	0.001262
M	117	N117N	aaC	aaT	7	7	AY.84	0.003062
M	117	N117N	aaC	aaT	7	7	AY.9.1	0.000586
M	117	N117N	aaC	aaT	7	7	B.1.1.207	0.008274
M	117	N117N	aaC	aaT	7	7	B.1.1.284	0.000752
M	117	N117N	aaC	aaT	7	7	B.1.1.33	0.002946
M	117	N117N	aaC	aaT	7	7	B.1.258.17	0.000728
M	117	N117N	aaC	aaT	7	7	B.1.409	0.005469
M	117	N117N	aaC	aaT	7	7	B.1.609	0.003356
M	117	N117N	aaC	aaT	7	7	B.1.617.1	0.000903
M	117	N117N	aaC	aaT	7	7	B.1.623	0.003755
M	117	N117N	aaC	aaT	7	7	B.1.637	0.000512
M	117	N117N	aaC	aaT	7	7	P.1.1	0.002224
M	117	N117N	aaC	aaT	7	7	P.1.14	0.000335
M	117	N117N	aaC	aaT	6	6	A	0.002322
M	117	N117N	aaC	aaT	6	6	AE.8	0.002934
M	117	N117N	aaC	aaT	6	6	AY.118	0.000376
M	117	N117N	aaC	aaT	6	6	AY.53	0.001725
M	117	N117N	aaC	aaT	6	6	AY.6	0.000247
M	117	N117N	aaC	aaT	6	6	AY.65	0.003198
M	117	N117N	aaC	aaT	6	6	B	0.000767
M	117	N117N	aaC	aaT	6	6	B.1.1.263	0.009346
M	117	N117N	aaC	aaT	6	6	B.1.1.311	0.002149
M	117	N117N	aaC	aaT	6	6	B.1.1.37	0.001157
M	117	N117N	aaC	aaT	6	6	B.1.160.8	0.007732
M	117	N117N	aaC	aaT	6	6	B.1.232	0.003224
M	117	N117N	aaC	aaT	6	6	B.1.356	0.010363
M	117	N117N	aaC	aaT	6	6	P.1.7	0.001916
M	117	N117N	aaC	aaT	5	5	A.29	0.026596
M	117	N117N	aaC	aaT	5	5	AY.106	0.001674
M	117	N117N	aaC	aaT	5	5	AY.45	0.000608
M	117	N117N	aaC	aaT	5	5	AY.56	0.008026
M	117	N117S	aAC	aGT	5	5	AY.85	0.002136
M	117	N117N	aaC	aaT	5	5	B.1.1.135	0.023474
M	117	N117N	aaC	aaT	5	5	B.1.1.222	0.00102
M	117	N117N	aaC	aaT	5	5	B.1.1.348	0.003981
M	117	N117N	aaC	aaT	5	5	B.1.177.4	0.001055
M	117	N117N	aaC	aaT	5	5	B.1.177.40	0.025773
M	117	N117N	aaC	aaT	5	5	B.1.177.7	0.000824
M	117	N117K	aaC	aaA	3	5	B.1.2	0.000026
M	117	N117K	aaC	aaG	2	5	B.1.2	0.000018
M	117	N117N	aaC	aaT	5	5	B.1.214.2	0.002998
M	117	N117N	aaC	aaT	5	5	B.1.366	0.02439
M	117	N117N	aaC	aaT	4	4	AY.105	0.002572
M	117	N117N	aaC	aaT	4	4	AY.113	0.00057
M	117	N117N	aaC	aaT	4	4	AY.13	0.000644
M	117	N117N	aaC	aaT	4	4	AY.38	0.001997
M	117	N117N	aaC	aaT	4	4	AY.40	0.003857
M	117	N117D	Aac	Gac	4	4	AY.44	0.000024
M	117	N117D	Aac	Gac	4	4	AY.45	0.000487
M	117	N117N	aaC	aaT	4	4	AY.46.6	0.000289
M	117	N117N	aaC	aaT	4	4	AY.69	0.000747
M	117	N117N	aaC	aaT	4	4	AY.86	0.00332
M	117	N117N	aaC	aaT	4	4	AY.98	0.000316
M	117	N117N	aaC	aaT	4	4	B.1.1.161	0.014134
M	117	N117N	aaC	aaT	4	4	B.1.1.44	0.009639
M	117	N117N	aaC	aaT	4	4	B.1.1.461	0.048193
M	117	N117N	aaC	aaT	4	4	B.1.177.60	0.000874
M	117	N117N	aaC	aaT	4	4	B.1.177.86	0.000734
M	117	N117N	aaC	aaT	4	4	B.1.258.11	0.001585
M	117	N117N	aaC	aaT	4	4	B.1.396	0.002823
M	117	N117N	aaC	aaT	4	4	B.1.565	0.003241
M	117	N117N	aaC	aaT	4	4	B.1.595	0.001044
M	117	N117N	aaC	aaT	4	4	B.1.626	0.022857
M	117	N117N	aaC	aaT	4	4	C.36.3.1	0.01087
M	117	N117N	aaC	aaT	4	4	P.1.12	0.001936
M	117	N117N	aaC	aaT	4	4	Q.1	0.000505
M	117	N117Y	Aac	Tac	2	3		0.111111
M	117	N117Y	AaC	TaT	1	3		0.055556
M	117	N117N	aaC	aaT	3	3	AD.2	0.000657
M	117	N117I	aAc	aTc	3	3	All	0.000001
M	117	N117T	aAc	aCc	2	3	All	0
M	117	N117T	aAC	aCG	1	3	All	0
M	117	N117K	aaC	aaG	2	3	AY.103	0.000012
M	117	N117K	aaC	aaA	1	3	AY.103	0.000006
M	117	N117N	aaC	aaT	3	3	AY.12	0.000948
M	117	N117N	aaC	aaT	3	3	AY.16	0.001139
M	117	N117N	aaC	aaT	3	3	AY.35	0.000699
M	117	N117S	aAc	aGc	3	3	AY.4	0.000005
M	117	N117N	aaC	aaT	3	3	AY.4.1	0.002212
M	117	N117N	aaC	aaT	3	3	AY.4.2.1	0.000447
M	117	N117N	aaC	aaT	3	3	AY.4.4	0.001227
M	117	N117N	aaC	aaT	3	3	AY.4.5	0.000322
M	117	N117K	aaC	aaG	2	3	AY.43	0.000009
M	117	N117K	aaC	aaA	1	3	AY.43	0.000004
M	117	N117N	aaC	aaT	3	3	AY.46.4	0.000494
M	117	N117N	aaC	aaT	3	3	AY.64	0.001786
M	117	N117N	aaC	aaT	3	3	AY.83	0.005172
M	117	N117N	aaC	aaT	3	3	AY.93	0.000819
M	117	N117K	aaC	aaG	3	3	AY.98	0.000237
M	117	N117N	aaC	aaT	3	3	B.1.1.294	0.003797
M	117	N117N	aaC	aaT	3	3	B.1.1.448	0.006098
M	117	N117N	aaC	aaT	3	3	B.1.1.523	0.004687
M	117	N117N	aaC	aaT	3	3	B.1.177.15	0.001893
M	117	N117N	aaC	aaT	3	3	B.1.177.21	0.000229
M	117	N117N	aaC	aaT	3	3	B.1.311	0.000824
M	117	N117N	aaC	aaT	3	3	B.1.346	0.003932
M	117	N117K	aaC	aaG	3	3	B.1.351	0.000089
M	117	N117N	aaC	aaT	3	3	B.1.36.16	0.004274
M	117	N117N	aaC	aaT	3	3	B.1.36.8	0.003
M	117	N117N	aaC	aaT	3	3	B.1.367	0.002377
M	117	N117K	aaC	aaG	2	3	B.1.429	0.000047
M	117	N117K	aaC	aaA	1	3	B.1.429	0.000024
M	117	N117N	aaC	aaT	3	3	B.1.509	0.002597
M	117	N117N	aaC	aaT	3	3	B.1.521	0.014925
M	117	N117K	aaC	aaA	3	3	C.37	0.000348
M	117	N117N	aaC	aaT	3	3	P.1.16	0.001122
M	117	N117N	aaC	aaT	3	3	P.1.4	0.00293
M	117	N117N	aaC	aaT	3	3	Q.2	0.00184
M	117	N117N	aaC	aaT	2	2	A.5	0.003846
M	117	N117del2	AAc	--c	1	2	All	0
M	117	N117del2	aAC	a--	1	2	All	0
M	117	N117N	aaC	aaT	2	2	AY.101	0.000981
M	117	N117N	aaC	aaT	2	2	AY.109	0.001479
M	117	N117N	aaC	aaT	2	2	AY.110	0.000225
M	117	N117N	aaC	aaT	2	2	AY.111	0.000366
M	117	N117K	aaC	aaA	1	2	AY.25	0.000006
M	117	N117K	aaC	aaG	1	2	AY.25	0.000006
M	117	N117N	aaC	aaT	2	2	AY.27	0.000129
M	117	N117K	aaC	aaG	2	2	AY.29	0.000032
M	117	N117S	aAc	aGc	2	2	AY.3	0.00002
M	117	N117N	aaC	aaT	2	2	AY.34.1	0.00102
M	117	N117N	aaC	aaT	2	2	AY.4.3	0.001684
M	117	N117N	aaC	aaT	2	2	AY.41	0.000588
M	117	N117H	Aac	Cac	2	2	AY.44	0.000012
M	117	N117S	aAc	aGc	2	2	AY.44	0.000012
M	117	N117N	aaC	aaT	2	2	AY.5.4	0.000553
M	117	N117N	aaC	aaT	2	2	AY.55	0.001835
M	117	N117N	aaC	aaT	2	2	AY.7.1	0.000225
M	117	N117N	aaC	aaT	2	2	AY.70	0.000417
M	117	N117N	aaC	aaT	2	2	AY.71	0.00095
M	117	N117N	aaC	aaT	2	2	AY.78	0.003082
M	117	N117N	aaC	aaT	2	2	AY.81	0.003984
M	117	N117N	aaC	aaT	2	2	AY.91.1	0.00813
M	117	N117N	aaC	aaT	2	2	AY.92	0.000575
M	117	N117N	aaC	aaT	2	2	AY.95	0.001522
M	117	N117S	aAc	aGc	2	2	B.1	0.000018
M	117	N117K	aaC	aaA	2	2	B.1.1	0.000036
M	117	N117N	aaC	aaT	2	2	B.1.1.121	0.004854
M	117	N117N	aaC	aaT	2	2	B.1.1.128	0.014184
M	117	N117N	aaC	aaT	2	2	B.1.1.148	0.017544
M	117	N117N	aaC	aaT	2	2	B.1.1.163	0.015267
M	117	N117N	aaC	aaT	2	2	B.1.1.171	0.007353
M	117	N117N	aaC	aaT	2	2	B.1.1.216	0.001781
M	117	N117N	aaC	aaT	2	2	B.1.1.253	0.005013
M	117	N117N	aaC	aaT	2	2	B.1.1.273	0.013514
M	117	N117N	aaC	aaT	2	2	B.1.1.277	0.001517
M	117	N117N	aaC	aaT	2	2	B.1.1.316	0.00185
M	117	N117N	aaC	aaT	2	2	B.1.1.336	0.033333
M	117	N117N	aaC	aaT	2	2	B.1.1.518	0.012658
M	117	N117N	aaC	aaT	2	2	B.1.1.526	0.007092
M	117	N117N	aaC	aaT	2	2	B.1.1.61	0.017544
M	117	N117N	aaC	aaT	2	2	B.1.169	0.029851
M	117	N117N	aaC	aaT	2	2	B.1.177.12	0.000303
M	117	N117N	aaC	aaT	2	2	B.1.177.41	0.005
M	117	N117N	aaC	aaT	2	2	B.1.177.5	0.002484
M	117	N117N	aaC	aaT	2	2	B.1.177.53	0.004785
M	117	N117N	aaC	aaT	2	2	B.1.177.65	0.001331
M	117	N117N	aaC	aaT	2	2	B.1.177.72	0.00678
M	117	N117N	aaC	aaT	2	2	B.1.177.87	0.001456
M	117	N117N	aaC	aaT	2	2	B.1.179	0.007519
M	117	N117N	aaC	aaT	2	2	B.1.210	0.004264
M	117	N117Y	Aac	Tac	2	2	B.1.221	0.000142
M	117	N117N	aaC	aaT	2	2	B.1.36.36	0.001204
M	117	N117N	aaC	aaT	2	2	B.1.400	0.000858
M	117	N117N	aaC	aaT	2	2	B.1.413	0.008511
M	117	N117N	aaC	aaT	2	2	B.1.420	0.020833
M	117	N117N	aaC	aaT	2	2	B.1.466.2	0.000782
M	117	N117N	aaC	aaT	2	2	B.1.497	0.00063
M	117	N117N	aaC	aaT	2	2	B.1.543	0.02
M	117	N117N	aaC	aaT	2	2	B.1.575.1	0.004878
M	117	N117N	aaC	aaT	2	2	B.1.621.1	0.001012
M	117	N117F	AAc	TTc	1	1		0.055556
M	117	N117N	aaC	aaT	1	1		0.055556
M	117	N117S	AAc	TCc	1	1		0.055556
M	117	N117T	aAc	aCc	1	1		0.055556
M	117	N117I	aAc	aTc	1	1		0.055556
M	117	N117N	aaC	aaT	1	1	A.2.5	0.000499
M	117	N117N	aaC	aaT	1	1	A.2.5.3	0.010309
M	117	N117N	aaC	aaT	1	1	A.28	0.002646
M	117	N117N	aaC	aaT	1	1	A.3	0.002096
M	117	N117N	aaC	aaT	1	1	AA.8	0.022222
M	117	N117del1	aaC	aa-	1	1	All	0
M	117	N117F	AAc	TTc	1	1	All	0
M	117	N117P	AAc	CCc	1	1	All	0
M	117	N117N	aaC	aaT	1	1	AU.2	0.002421
M	117	N117N	aaC	aaT	1	1	AY.1	0.000396
M	117	N117Y	Aac	Tac	1	1	AY.10	0.00053
M	117	N117S	aAc	aGc	1	1	AY.103	0.000006
M	117	N117H	Aac	Cac	1	1	AY.103	0.000006
M	117	N117N	aaC	aaT	1	1	AY.104	0.001984
M	117	N117N	aaC	aaT	1	1	AY.108	0.001103
M	117	N117N	aaC	aaT	1	1	AY.16.1	0.00047
M	117	N117N	aaC	aaT	1	1	AY.2	0.000356
M	117	N117N	aaC	aaT	1	1	AY.24	0.000431
M	117	N117S	aAc	aGc	1	1	AY.25	0.000006
M	117	N117del2	aAC	a--	1	1	AY.25	0.000006
M	117	N117del	AAC	---	1	1	AY.26	0.000028
M	117	N117D	Aac	Gac	1	1	AY.27	0.000065
M	117	N117N	aaC	aaT	1	1	AY.28	0.00189
M	117	N117S	aAc	aGc	1	1	AY.29	0.000016
M	117	N117T	aAC	aCG	1	1	AY.3	0.00001
M	117	N117K	aaC	aaA	1	1	AY.3	0.00001
M	117	N117N	aaC	aaT	1	1	AY.32	0.000532
M	117	N117N	aaC	aaT	1	1	AY.36	0.000148
M	117	N117T	aAc	aCc	1	1	AY.4	0.000002
M	117	N117Y	Aac	Tac	1	1	AY.4.2	0.000022
M	117	N117S	aAc	aGc	1	1	AY.4.5	0.000107
M	117	N117S	aAc	aGc	1	1	AY.43	0.000004
M	117	N117Y	Aac	Tac	1	1	AY.44	0.000006
M	117	N117P	AAc	CCc	1	1	AY.44	0.000006
M	117	N117N	aaC	aaT	1	1	AY.46.3	0.000934
M	117	N117N	aaC	aaT	1	1	AY.48	0.000465
M	117	N117N	aaC	aaT	1	1	AY.62	0.000436
M	117	N117N	aaC	aaT	1	1	AY.68	0.000274
M	117	N117K	aaC	aaG	1	1	AY.68	0.000274
M	117	N117N	aaC	aaT	1	1	AY.7	0.000196
M	117	N117K	aaC	aaG	1	1	AY.7.1	0.000113
M	117	N117N	aaC	aaT	1	1	AY.73	0.000665
M	117	N117D	Aac	Gac	1	1	AY.74	0.000116
M	117	N117del	AAC	---	1	1	AY.75	0.000056
M	117	N117N	aaC	aaT	1	1	AY.82	0.001357
M	117	N117del	AAC	---	1	1	AY.9	0.000068
M	117	N117N	aaC	aaT	1	1	AY.91	0.00073
M	117	N117N	aaC	aaT	1	1	AY.94	0.000443
M	117	N117S	aAc	aGc	1	1	AY.99.2	0.000092
M	117	N117K	aaC	aaG	1	1	B.1	0.000009
M	117	N117del	AAC	---	1	1	B.1	0.000009
M	117	N117H	Aac	Cac	1	1	B.1	0.000009
M	117	N117Y	Aac	Tac	1	1	B.1	0.000009
M	117	N117I	aAc	aTc	1	1	B.1	0.000009
M	117	N117S	aAc	aGc	1	1	B.1.1	0.000018
M	117	N117N	aaC	aaT	1	1	B.1.1.1	0.000327
M	117	N117N	aaC	aaT	1	1	B.1.1.12	0.007463
M	117	N117N	aaC	aaT	1	1	B.1.1.13	0.035714
M	117	N117N	aaC	aaT	1	1	B.1.1.180	0.010753
M	117	N117N	aaC	aaT	1	1	B.1.1.189	0.001513
M	117	N117N	aaC	aaT	1	1	B.1.1.219	0.005
M	117	N117del	AAC	---	1	1	B.1.1.221	0.010101
M	117	N117N	aaC	aaT	1	1	B.1.1.243	0.004082
M	117	N117N	aaC	aaT	1	1	B.1.1.25	0.000569
M	117	N117N	aaC	aaT	1	1	B.1.1.258	0.003257
M	117	N117N	aaC	aaT	1	1	B.1.1.26	0.005236
M	117	N117N	aaC	aaT	1	1	B.1.1.279	0.001121
M	117	N117N	aaC	aaT	1	1	B.1.1.289	0.002083
M	117	N117H	Aac	Cac	1	1	B.1.1.291	0.000742
M	117	N117N	aaC	aaT	1	1	B.1.1.301	0.001179
M	117	N117N	aaC	aaT	1	1	B.1.1.302	0.002075
M	117	N117K	aaC	aaA	1	1	B.1.1.306	0.000438
M	117	N117N	aaC	aaT	1	1	B.1.1.307	0.002532
M	117	N117H	Aac	Cac	1	1	B.1.1.315	0.008475
M	117	N117N	aaC	aaT	1	1	B.1.1.318	0.000302
M	117	N117N	aaC	aaT	1	1	B.1.1.322	0.008772
M	117	N117N	aaC	aaT	1	1	B.1.1.351	0.002793
M	117	N117N	aaC	aaT	1	1	B.1.1.369	0.000446
M	117	N117del2	AAc	--c	1	1	B.1.1.372	0.000689
M	117	N117N	aaC	aaT	1	1	B.1.1.372	0.000689
M	117	N117N	aaC	aaT	1	1	B.1.1.39	0.00051
M	117	N117N	aaC	aaT	1	1	B.1.1.413	0.006897
M	117	N117N	aaC	aaT	1	1	B.1.1.416	0.000905
M	117	N117del	AAC	---	1	1	B.1.1.420	0.001006
M	117	N117N	aaC	aaT	1	1	B.1.1.440	0.011765
M	117	N117N	aaC	aaT	1	1	B.1.1.450	0.034483
M	117	N117N	aaC	aaT	1	1	B.1.1.464	0.001473
M	117	N117N	aaC	aaT	1	1	B.1.1.48	0.002874
M	117	N117N	aaC	aaT	1	1	B.1.1.486	0.001577
M	117	N117N	aaC	aaT	1	1	B.1.1.50	0.000679
M	117	N117N	aaC	aaT	1	1	B.1.1.517	0.006803
M	117	N117N	aaC	aaT	1	1	B.1.1.58	0.005376
M	117	N117S	aAc	aGc	1	1	B.1.1.7	0.000001
M	117	N117N	aaC	aaT	1	1	B.1.1.70	0.000341
M	117	N117N	aaC	aaT	1	1	B.1.1.99	0.02381
M	117	N117N	aaC	aaT	1	1	B.1.139	0.000733
M	117	N117N	aaC	aaT	1	1	B.1.157	0.002985
M	117	N117K	aaC	aaA	1	1	B.1.157	0.002985
M	117	N117N	aaC	aaT	1	1	B.1.160.16	0.000929
M	117	N117K	aaC	aaA	1	1	B.1.160.26	0.002421
M	117	N117N	aaC	aaT	1	1	B.1.160.7	0.002079
M	117	N117N	aaC	aaT	1	1	B.1.162	0.005025
M	117	N117N	aaC	aaT	1	1	B.1.177.18	0.00116
M	117	N117S	aAC	aGT	1	1	B.1.177.21	0.000076
M	117	N117H	Aac	Cac	1	1	B.1.177.21	0.000076
M	117	N117N	aaC	aaT	1	1	B.1.177.39	0.015385
M	117	N117N	aaC	aaT	1	1	B.1.177.43	0.001477
M	117	N117N	aaC	aaT	1	1	B.1.177.54	0.000606
M	117	N117N	aaC	aaT	1	1	B.1.177.57	0.000281
M	117	N117N	aaC	aaT	1	1	B.1.177.59	0.016129
M	117	N117N	aaC	aaT	1	1	B.1.177.6	0.000977
M	117	N117N	aaC	aaT	1	1	B.1.177.63	0.002703
M	117	N117N	aaC	aaT	1	1	B.1.177.73	0.000566
M	117	N117N	aaC	aaT	1	1	B.1.177.8	0.000752
M	117	N117N	aaC	aaT	1	1	B.1.177.80	0.001912
M	117	N117N	aaC	aaT	1	1	B.1.218	0.005155
M	117	N117S	aAc	aGc	1	1	B.1.221	0.000071
M	117	N117N	aaC	aaT	1	1	B.1.241	0.000812
M	117	N117K	aaC	aaG	1	1	B.1.258.11	0.000396
M	117	N117del	AAC	---	1	1	B.1.258.11	0.000396
M	117	N117N	aaC	aaT	1	1	B.1.265	0.001271
M	117	N117N	aaC	aaT	1	1	B.1.279	0.000514
M	117	N117N	aaC	aaT	1	1	B.1.281	0.021739
M	117	N117N	aaC	aaT	1	1	B.1.320	0.001245
M	117	N117N	aaC	aaT	1	1	B.1.332	0.003497
M	117	N117I	aAc	aTc	1	1	B.1.338	0.008621
M	117	N117K	aaC	aaA	1	1	B.1.349	0.000715
M	117	N117N	aaC	aaT	1	1	B.1.349	0.000715
M	117	N117N	aaC	aaT	1	1	B.1.351.3	0.000876
M	117	N117del1	aaC	aa-	1	1	B.1.36	0.000146
M	117	N117N	aaC	aaT	1	1	B.1.36.25	0.002208
M	117	N117N	aaC	aaT	1	1	B.1.36.31	0.001751
M	117	N117N	aaC	aaT	1	1	B.1.36.9	0.003215
M	117	N117N	aaC	aaT	1	1	B.1.362	0.001541
M	117	N117N	aaC	aaT	1	1	B.1.362.2	0.004717
M	117	N117N	aaC	aaT	1	1	B.1.395	0.007042
M	117	N117N	aaC	aaT	1	1	B.1.401	0.008197
M	117	N117D	Aac	Gac	1	1	B.1.427	0.00005
M	117	N117del	AAC	---	1	1	B.1.427	0.00005
M	117	N117N	aaC	aaT	1	1	B.1.428	0.00102
M	117	N117N	aaC	aaT	1	1	B.1.462	0.007246
M	117	N117N	aaC	aaT	1	1	B.1.465	0.003802
M	117	N117N	aaC	aaT	1	1	B.1.474	0.001901
M	117	N117N	aaC	aaT	1	1	B.1.506	0.02381
M	117	N117N	aaC	aaT	1	1	B.1.507	0.011236
M	117	N117N	aaC	aaT	1	1	B.1.517	0.000427
M	117	N117N	aaC	aaT	1	1	B.1.560	0.00463
M	117	N117N	aaC	aaT	1	1	B.1.568	0.001111
M	117	N117N	aaC	aaT	1	1	B.1.569	0.014493
M	117	N117N	aaC	aaT	1	1	B.1.570	0.002941
M	117	N117N	aaC	aaT	1	1	B.1.576	0.000907
M	117	N117N	aaC	aaT	1	1	B.1.582	0.000491
M	117	N117N	aaC	aaT	1	1	B.1.587	0.001898
M	117	N117N	aaC	aaT	1	1	B.1.588	0.00091
M	117	N117N	aaC	aaT	1	1	B.1.602	0.006536
M	117	N117N	aaC	aaT	1	1	B.1.612	0.002653
M	117	N117K	aaC	aaG	1	1	B.1.617.1	0.000129
M	117	N117del	AAC	---	1	1	B.1.617.2	0.000004
M	117	N117D	Aac	Gac	1	1	B.1.617.2	0.000004
M	117	N117K	aaC	aaG	1	1	B.1.617.2	0.000004
M	117	N117N	aaC	aaT	1	1	B.1.618	0.004032
M	117	N117N	aaC	aaT	1	1	B.1.619.1	0.000641
M	117	N117H	Aac	Cac	1	1	B.1.8	0.001972
M	117	N117N	aaC	aaT	1	1	B.1.9.5	0.005682
M	117	N117N	aaC	aaT	1	1	B.3	0.000831
M	117	N117K	aaC	aaG	1	1	B.4	0.002208
M	117	N117N	aaC	aaT	1	1	B.6.6	0.000889
M	117	N117N	aaC	aaT	1	1	C.14	0.004329
M	117	N117N	aaC	aaT	1	1	C.16	0.00106
M	117	N117del	AAC	---	1	1	C.17	0.055556
M	117	N117N	aaC	aaT	1	1	C.3	0.007634
M	117	N117N	aaC	aaT	1	1	C.30	0.001727
M	117	N117N	aaC	aaT	1	1	C.35	0.000774
M	117	N117N	aaC	aaT	1	1	C.36.3	0.000567
M	117	N117Y	Aac	Tac	1	1	D.2	0.000075
M	117	N117N	aaC	aaT	1	1	M.1	0.023256
M	117	N117N	aaC	aaT	1	1	N.3	0.005814
M	117	N117N	aaC	aaT	1	1	N.5	0.001767
M	117	N117N	aaC	aaT	1	1	P.7	0.004367
M	117	N117N	aaC	aaT	1	1	Q.4	0.000455
M	117	N117N	aaC	aaT	1	1	Q.6	0.006623
M	117	N117N	aaC	aaT	1	1	Q.7	0.001111
M	117	N117N	aaC	aaT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.