CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 112

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M112F112FsynttCttT91139113126856-26858
M112F112LnonsynttCttA1551110.71612926856-26858
M112F112LnonsynttCttG155220.14193526856-26858
M112F112LnonsynTtcCtc155200.12903226856-26858
M112F112LnonsynTtCCtT15520.012903226856-26858
M112F112deldelTTC---9595126856-26858
M112F112YnonsyntTctAc16150.937526856-26858
M112F112YnonsyntTCtAT1610.062526856-26858
M112F112InonsynTtcAtc850.62526856-26858
M112F112InonsynTtCAtT830.37526856-26858
M112F112SnonsyntTctCc66126856-26858
M112F112CnonsyntTctGc320.66666726856-26858
M112F112del1delTtc-tc320.66666726856-26858
M112F112RnonsynTTcCGc320.66666726856-26858
M112F112del1delttCtt-310.33333326856-26858
M112F112RnonsynTTCCGT310.33333326856-26858
M112F112CnonsyntTCtGT310.33333326856-26858
M112F112XnonsyntTCtGA11126856-26858
M112F112TnonsynTTCACA11126856-26858
M112F112VnonsynTtcGtc11126856-26858

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M112F112FttCttT91139113All0.001743
M112F112FttCttT20722072B.1.1.70.001855
M112F112FttCttT902902AY.520.734528
M112F112FttCttT663663AP.10.995495
M112F112FttCttT629629AY.1030.003905
M112F112FttCttT554554B.1.617.20.002086
M112F112FttCttT470470Q.70.522222
M112F112FttCttT462462AY.40.000719
M112F112FttCttT261261AY.440.001589
M112F112FttCttT213213AY.4.20.00462
M112F112FttCttT204204AY.1000.009385
M112F112FttCttT196196B.1.20.001726
M112F112LttCttA111155All0.000021
M112F112LttCttG22155All0.000004
M112F112LTtcCtc20155All0.000004
M112F112LTtCCtT2155All0
M112F112FttCttT153153AY.250.00092
M112F112FttCttT117117B.1.4290.002753
M112F112FttCttT116116AY.430.000514
M112F112delTTC---9595All0.000018
M112F112FttCttT8080B.1.5750.024272
M112F112delTTC---7272B.1.177.210.005506
M112F112FttCttT7171AY.30.000706
M112F112FttCttT6767B.1.5260.001575
M112F112FttCttT6767P.10.001056
M112F112FttCttT6161B.10.000559
M112F112FttCttT6161B.1.10.001107
M112F112FttCttT5757B.1.2210.004049
M112F112FttCttT5656AY.50.001156
M112F112FttCttT5555B.1.3510.001635
M112F112FttCttT5555P.1.140.002629
M112F112FttCttT5252AY.450.006328
M112F112FttCttT4949B.1.1600.001528
M112F112FttCttT4747B.1.1.4330.066952
M112F112FttCttT4545C.350.03483
M112F112FttCttT4141B.1.1770.00054
M112F112FttCttT4040B.1.160.260.096852
M112F112FttCttT3535B.1.5960.00305
M112F112FttCttT3333AY.1190.001165
M112F112FttCttT3232AY.1070.014911
M112F112FttCttT3232B.1.1.3180.009656
M112F112FttCttT3131AY.260.000878
M112F112FttCttT3030AY.390.000741
M112F112FttCttT3030B.1.1.280.009337
M112F112FttCttT3030B.1.2430.002088
M112F112FttCttT3030B.1.6210.002656
M112F112LttCttA2328AY.1030.000143
M112F112LttCttG528AY.1030.000031
M112F112FttCttT2828C.370.00325
M112F112FttCttT2727AY.620.011765
M112F112FttCttT2727AY.750.001513
M112F112FttCttT2727B.1.1.2800.083333
M112F112FttCttT2727B.1.5250.003055
M112F112FttCttT2525AY.470.000778
M112F112FttCttT2424AY.290.000379
M112F112FttCttT2323AY.200.000894
M112F112FttCttT2121B.1.2580.001397
M112F112FttCttT2020B.1.1.5190.000794
M112F112LttCttA1218AY.440.000073
M112F112LttCttG518AY.440.00003
M112F112LTtcCtc118AY.440.000006
M112F112FttCttT1818B.1.177.820.008592
M112F112LttCttA1417AY.250.000084
M112F112LTtcCtc217AY.250.000012
M112F112LttCttG117AY.250.000006
M112F112FttCttT1717AY.930.004642
M112F112YtTctAc1516All0.000003
M112F112YtTCtAT116All0
M112F112FttCttT1616B.1.1.2220.003264
M112F112LttCttA1616B.1.5260.000376
M112F112FttCttT1515B0.001917
M112F112FttCttT1515B.1.1.3170.006175
M112F112LttCttA1215B.1.617.20.000045
M112F112LTtcCtc315B.1.617.20.000011
M112F112FttCttT1414AY.320.007455
M112F112FttCttT1414B.1.6370.001023
M112F112FttCttT1313AY.46.60.000939
M112F112FttCttT1212B.1.6280.004228
M112F112FttCttT1111AY.39.10.000436
M112F112FttCttT1010AY.420.000402
M112F112FttCttT1010B.1.1.1760.004394
M112F112FttCttT1010B.1.3960.007057
M112F112FttCttT99AY.9.20.000331
M112F112delTTC---99B.1.1.70.000008
M112F112FttCttT99B.1.4270.000454
M112F112ITtcAtc58All0.000001
M112F112ITtCAtT38All0.000001
M112F112FttCttT88AY.1060.002679
M112F112FttCttT88AY.340.000776
M112F112FttCttT88AY.98.10.000387
M112F112FttCttT88B.1.360.001167
M112F112FttCttT88B.1.4520.109589
M112F112FttCttT77AY.160.002658
M112F112FttCttT77B.1.177.750.007284
M112F112FttCttT77P.20.001306
M112F112StTctCc66All0.000001
M112F112FttCttT66AY.1130.000854
M112F112LttCttG36AY.750.000168
M112F112LttCttA36AY.750.000168
M112F112LttCttA36B.1.1.70.000003
M112F112LttCttG26B.1.1.70.000002
M112F112LTtcCtc16B.1.1.70.000001
M112F112FttCttT66B.1.2340.000792
M112F112FttCttT66B.1.438.10.000644
M112F112FttCttT66B.1.499.10.666667
M112F112FttCttT66B.1.5880.00546
M112F112FttCttT66Q.10.000758
M112F112FttCttT66Q.80.000989
M112F112FttCttT55AY.330.000334
M112F112FttCttT55AY.370.00158
M112F112FttCttT55AY.920.001436
M112F112FttCttT55AY.99.20.000461
M112F112YtTctAc55B.10.000046
M112F112FttCttT55B.1.1.1330.042373
M112F112FttCttT55B.1.1.500.003394
M112F112YtTctAc45B.1.1.70.000004
M112F112YtTCtAT15B.1.1.70.000001
M112F112FttCttT55B.1.1950.025126
M112F112FttCttT55B.1.3110.001373
M112F112FttCttT55B.1.3690.001426
M112F112FttCttT55B.1.5950.001305
M112F112FttCttT55B.1.617.10.000645
M112F112FttCttT55D.20.000375
M112F112FttCttT55P.1.40.004883
M112F112FttCttT44AY.1020.000106
M112F112FttCttT44AY.1080.00441
M112F112FttCttT44AY.1170.000338
M112F112FttCttT44AY.1200.000149
M112F112FttCttT44AY.270.000259
M112F112FttCttT44AY.3.10.000341
M112F112FttCttT44AY.46.40.000658
M112F112FttCttT44AY.5.30.00135
M112F112FttCttT44AY.710.0019
M112F112FttCttT44AY.75.10.000721
M112F112FttCttT44AY.9.10.000335
M112F112FttCttT44B.1.1.390.002039
M112F112FttCttT44B.1.177.570.001124
M112F112FttCttT44B.1.2190.037736
M112F112FttCttT44B.1.2400.000862
M112F112FttCttT44B.1.36.290.002069
M112F112FttCttT44B.1.4090.003125
M112F112FttCttT44B.1.5610.001588
M112F112FttCttT44C.360.003643
M112F112FttCttT44P.1.20.004624
M112F112RTTcCGc23All0
M112F112CtTctGc23All0
M112F112del1Ttc-tc23All0
M112F112del1ttCtt-13All0
M112F112RTTCCGT13All0
M112F112CtTCtGT13All0
M112F112FttCttT33AY.1100.000338
M112F112FttCttT33AY.120.000948
M112F112LttCttG33AY.470.000093
M112F112FttCttT33AY.60.000123
M112F112FttCttT33AY.680.000821
M112F112FttCttT33AY.840.001312
M112F112FttCttT33AZ.20.002463
M112F112FttCttT33B.1.1.3120.005736
M112F112FttCttT33B.1.1620.015075
M112F112FttCttT33B.1.177.840.02
M112F112FttCttT33B.1.177.860.00055
M112F112FttCttT33B.1.2410.002435
M112F112FttCttT33B.1.258.30.005025
M112F112FttCttT33B.1.4970.000944
M112F112FttCttT33B.1.4990.003151
M112F112FttCttT33B.1.5820.001472
M112F112FttCttT33B.1.6230.001609
M112F112FttCttT33B.30.002492
M112F112FttCttT33P.1.170.000485
M112F112FttCttT33Q.30.000435
M112F112FttCttT220.111111
M112F112ITtcAtc120.055556
M112F112LTtCCtT120.055556
M112F112ITtCAtT120.055556
M112F112LTtcCtc120.055556
M112F112LttCttA22AY.1000.000092
M112F112FttCttT22AY.1180.000125
M112F112LttCttA22AY.1190.000071
M112F112FttCttT22AY.120.10.000642
M112F112LttCttA22AY.200.000078
M112F112FttCttT22AY.240.000862
M112F112delTTC---22AY.40.000003
M112F112LttCttG12AY.40.000002
M112F112LTtcCtc12AY.40.000002
M112F112FttCttT22AY.550.001835
M112F112FttCttT22AY.600.001876
M112F112FttCttT22AY.610.00021
M112F112FttCttT22AY.70.000392
M112F112FttCttT22AY.740.000231
M112F112FttCttT22AY.850.000854
M112F112FttCttT22AZ.10.001735
M112F112LttCttA22B.1.10.000036
M112F112ITtCAtT12B.1.10.000018
M112F112ITtcAtc12B.1.10.000018
M112F112FttCttT22B.1.1.1220.090909
M112F112FttCttT22B.1.1.1530.002191
M112F112FttCttT22B.1.1.2140.000111
M112F112FttCttT22B.1.1.270.011299
M112F112FttCttT22B.1.1.3050.007722
M112F112ITtcAtc22B.1.1.70.000002
M112F112FttCttT22B.1.177.240.002591
M112F112FttCttT22B.1.177.350.001382
M112F112FttCttT22B.1.177.40.000422
M112F112FttCttT22B.1.177.600.000437
M112F112FttCttT22B.1.214.20.001199
M112F112RTTcCGc12B.1.2210.000071
M112F112CtTCtGT12B.1.2210.000071
M112F112CtTctGc12B.1.2210.000071
M112F112RTTCCGT12B.1.2210.000071
M112F112LTtcCtc12B.1.2210.000071
M112F112ITtcAtc12B.1.2210.000071
M112F112ITtCAtT12B.1.2210.000071
M112F112LTtCCtT12B.1.2210.000071
M112F112FttCttT22B.1.258.170.000208
M112F112FttCttT22B.1.3810.015625
M112F112FttCttT22B.1.4110.007407
M112F112FttCttT22B.1.4220.001625
M112F112YtTctAc22B.1.4290.000047
M112F112FttCttT22B.1.4690.00722
M112F112FttCttT22B.1.4700.002809
M112F112FttCttT22B.1.5050.008772
M112F112FttCttT22B.1.6200.001892
M112F112delTTC---22B.1.6270.00404
M112F112LttCttA12P.10.000016
M112F112LTtcCtc12P.10.000016
M112F112FttCttT11A0.000387
M112F112FttCttT11A.180.05
M112F112LttCttA11A.20.000662
M112F112LttCttA11A.2.50.000499
M112F112FttCttT11AD.20.000219
M112F112TTTCACA11All0
M112F112XtTCtGA11All0
M112F112VTtcGtc11All0
M112F112FttCttT11AY.1010.00049
M112F112FttCttT11AY.1040.001984
M112F112LTtcCtc11AY.1130.000142
M112F112FttCttT11AY.1140.000231
M112F112LttCttA11AY.116.10.000311
M112F112LttCttA11AY.1170.000085
M112F112RTTcCGc11AY.1180.000063
M112F112FttCttT11AY.120.20.001285
M112F112FttCttT11AY.130.000161
M112F112FttCttT11AY.140.000088
M112F112FttCttT11AY.16.10.00047
M112F112FttCttT11AY.230.00007
M112F112FttCttT11AY.23.10.000417
M112F112YtTctAc11AY.250.000006
M112F112LttCttA11AY.260.000028
M112F112FttCttT11AY.300.000396
M112F112LttCttA11AY.34.10.00051
M112F112FttCttT11AY.360.000148
M112F112FttCttT11AY.380.000499
M112F112LTtcCtc11AY.390.000025
M112F112FttCttT11AY.4.2.10.000149
M112F112FttCttT11AY.4.40.000409
M112F112FttCttT11AY.400.000964
M112F112del1ttCtt-11AY.440.000006
M112F112FttCttT11AY.460.000104
M112F112FttCttT11AY.46.10.001027
M112F112LttCttA11AY.46.40.000165
M112F112FttCttT11AY.46.50.000198
M112F112LTtcCtc11AY.480.000465
M112F112LttCttA11AY.50.000021
M112F112FttCttT11AY.530.000288
M112F112LttCttG11AY.540.000095
M112F112FttCttT11AY.540.000095
M112F112FttCttT11AY.590.00053
M112F112FttCttT11AY.640.000595
M112F112FttCttT11AY.690.000187
M112F112FttCttT11AY.7.10.000113
M112F112delTTC---11AY.750.000056
M112F112FttCttT11AY.80.000606
M112F112LttCttA11AY.840.000437
M112F112LttCttG11AY.850.000427
M112F112delTTC---11AY.90.000068
M112F112FttCttT11AY.90.000068
M112F112FttCttT11AY.900.000684
M112F112FttCttT11AY.910.00073
M112F112FttCttT11AY.91.10.004065
M112F112FttCttT11AY.980.000079
M112F112FttCttT11AY.990.001049
M112F112StTctCc11B0.000128
M112F112LttCttA11B.10.000009
M112F112del1Ttc-tc11B.10.000009
M112F112delTTC---11B.10.000009
M112F112YtTctAc11B.1.10.000018
M112F112FttCttT11B.1.1.10.000327
M112F112FttCttT11B.1.1.100.001115
M112F112FttCttT11B.1.1.1890.001513
M112F112FttCttT11B.1.1.1920.002309
M112F112FttCttT11B.1.1.2070.001182
M112F112YtTctAc11B.1.1.2140.000055
M112F112delTTC---11B.1.1.2210.010101
M112F112LTtcCtc11B.1.1.2220.000204
M112F112FttCttT11B.1.1.2300.009174
M112F112LttCttA11B.1.1.2320.001815
M112F112FttCttT11B.1.1.2650.003155
M112F112FttCttT11B.1.1.2840.000107
M112F112CtTctGc11B.1.1.3000.010753
M112F112FttCttT11B.1.1.3060.000438
M112F112FttCttT11B.1.1.3110.000358
M112F112LttCttA11B.1.1.3150.008475
M112F112FttCttT11B.1.1.330.000421
M112F112FttCttT11B.1.1.3390.010526
M112F112FttCttT11B.1.1.370.000193
M112F112delTTC---11B.1.1.3720.000689
M112F112FttCttT11B.1.1.3890.006061
M112F112FttCttT11B.1.1.3970.002252
M112F112FttCttT11B.1.1.3980.003226
M112F112FttCttT11B.1.1.4030.025641
M112F112StTctCc11B.1.1.4100.037037
M112F112FttCttT11B.1.1.4170.002703
M112F112delTTC---11B.1.1.4200.001006
M112F112FttCttT11B.1.1.4340.000349
M112F112FttCttT11B.1.1.4660.008696
M112F112FttCttT11B.1.1.510.001718
M112F112LTtcCtc11B.1.1.5190.00004
M112F112FttCttT11B.1.1.5280.004808
M112F112VTtcGtc11B.1.1.70.000001
M112F112FttCttT11B.1.110.30.000718
M112F112FttCttT11B.1.1280.000635
M112F112FttCttT11B.1.130.002375
M112F112FttCttT11B.1.1460.004237
M112F112FttCttT11B.1.1470.000756
M112F112FttCttT11B.1.160.110.005714
M112F112FttCttT11B.1.160.160.000929
M112F112FttCttT11B.1.160.310.008065
M112F112FttCttT11B.1.177.190.001431
M112F112FttCttT11B.1.177.210.000076
M112F112FttCttT11B.1.177.320.00135
M112F112FttCttT11B.1.177.500.004695
M112F112FttCttT11B.1.177.540.000606
M112F112FttCttT11B.1.177.620.001192
M112F112FttCttT11B.1.177.70.000165
M112F112FttCttT11B.1.177.730.000566
M112F112FttCttT11B.1.177.810.000189
M112F112FttCttT11B.1.177.830.001481
M112F112LTtcCtc11B.1.20.000009
M112F112LttCttA11B.1.214.20.0006
M112F112FttCttT11B.1.2360.002053
M112F112LTtcCtc11B.1.2430.00007
M112F112delTTC---11B.1.258.110.000396
M112F112FttCttT11B.1.258.110.000396
M112F112FttCttT11B.1.2980.002114
M112F112FttCttT11B.1.3010.005917
M112F112LTtcCtc11B.1.3330.010526
M112F112FttCttT11B.1.3490.000715
M112F112FttCttT11B.1.351.20.000303
M112F112LTtcCtc11B.1.351.30.000876
M112F112FttCttT11B.1.36.170.000494
M112F112LttCttA11B.1.36.180.00042
M112F112FttCttT11B.1.36.380.001642
M112F112YtTctAc11B.1.3610.001289
M112F112FttCttT11B.1.3620.001541
M112F112FttCttT11B.1.362.20.004717
M112F112FttCttT11B.1.3710.001122
M112F112FttCttT11B.1.416.10.001563
M112F112delTTC---11B.1.4270.00005
M112F112FttCttT11B.1.4510.008197
M112F112FttCttT11B.1.4560.003268
M112F112FttCttT11B.1.4630.008065
M112F112XtTCtGA11B.1.466.20.000391
M112F112StTctCc11B.1.4730.019231
M112F112FttCttT11B.1.5090.000866
M112F112StTctCc11B.1.5250.000113
M112F112FttCttT11B.1.5650.00081
M112F112LttCttA11B.1.5880.00091
M112F112FttCttT11B.1.6000.005848
M112F112StTctCc11B.1.617.20.000004
M112F112del1Ttc-tc11B.1.617.20.000004
M112F112TTTCACA11B.1.617.20.000004
M112F112delTTC---11B.1.617.20.000004
M112F112LttCttA11B.1.6230.000536
M112F112FttCttT11B.1.6250.002353
M112F112FttCttT11B.1.6310.003367
M112F112LttCttA11B.1.6370.000073
M112F112FttCttT11B.1.88.10.004808
M112F112FttCttT11B.1.9.40.006135
M112F112FttCttT11B.1.930.000934
M112F112FttCttT11B.6.60.000889
M112F112FttCttT11C.10.002392
M112F112delTTC---11C.170.055556
M112F112StTctCc11C.36.30.000567
M112F112LttCttA11D.20.000075
M112F112FttCttT11N.40.004255
M112F112FttCttT11P.1.100.000269
M112F112FttCttT11P.1.150.000232
M112F112FttCttT11P.1.160.000374
M112F112FttCttT11P.1.70.000319
M112F112FttCttT11Q.20.000613
M112F112FttCttT11Q.40.000455
M112F112FttCttT11R.10.00009
M112F112LttCttA11R.10.00009
M112F112FttCttT11U.20.008772
M112F112FttCttT11W.20.004831