CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 108

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M108S108SsyntcCtcT4314030.93503526844-26846
M108S108SsyntcCtcA431250.058004626844-26846
M108S108SsyntcCtcG43120.0046403726844-26846
M108S108SsynTCcAGc43110.0023201926844-26846
M108S108deldelTCC---9191126844-26846
M108S108AnonsynTccGcc1212126844-26846
M108S108FnonsyntCctTc970.77777826844-26846
M108S108FnonsyntCCtTT920.22222226844-26846
M108S108TnonsynTccAcc77126844-26846
M108S108PnonsynTccCcc760.85714326844-26846
M108S108PnonsynTcCCcT710.14285726844-26846
M108S108CnonsyntCctGc55126844-26846
M108S108YnonsyntCctAc55126844-26846
M108S108del2delTCC--G210.526844-26846
M108S108del2delTCc--c210.526844-26846
M108S108RnonsynTCCCGG11126844-26846
M108S108GnonsynTCcGGc11126844-26846
M108S108del1deltCct-c11126844-26846

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M108S108StcCtcT403431All0.000077
M108S108StcCtcA25431All0.000005
M108S108StcCtcG2431All0
M108S108STCcAGc1431All0
M108S108delTCC---9191All0.000017
M108S108StcCtcT8484B.1.1.2210.848485
M108S108delTCC---7575B.1.177.210.005735
M108S108StcCtcT3939AY.1030.000242
M108S108StcCtcT2532B.1.1.70.000022
M108S108StcCtcA732B.1.1.70.000006
M108S108StcCtcT2426AY.40.000037
M108S108StcCtcG126AY.40.000002
M108S108StcCtcA126AY.40.000002
M108S108StcCtcT2426B.1.617.20.00009
M108S108StcCtcA226B.1.617.20.000008
M108S108StcCtcT2025AY.440.000122
M108S108StcCtcA525AY.440.00003
M108S108StcCtcT2525B.1.20.00022
M108S108StcCtcT2121AY.250.000126
M108S108StcCtcT1515B.1.1.670.068493
M108S108StcCtcT1214B.10.00011
M108S108StcCtcA214B.10.000018
M108S108ATccGcc1212All0.000002
M108S108StcCtcT1212P.10.000189
M108S108FtCctTc79All0.000001
M108S108FtCCtTT29All0
M108S108delTCC---99B.1.1.70.000008
M108S108StcCtcT88B.1.1770.000105
M108S108TTccAcc77All0.000001
M108S108PTccCcc67All0.000001
M108S108PTcCCcT17All0
M108S108StcCtcT77AY.120.002212
M108S108StcCtcT56AY.430.000022
M108S108StcCtcG16AY.430.000004
M108S108YtCctAc55All0.000001
M108S108CtCctGc55All0.000001
M108S108StcCtcT55AY.260.000142
M108S108StcCtcT55AY.290.000079
M108S108StcCtcT55P.1.20.00578
M108S108StcCtcT44AY.240.001724
M108S108StcCtcT44AY.750.000224
M108S108ATccGcc44B.1.1.70.000004
M108S108StcCtcT44P.20.000747
M108S108FtCctTc230.111111
M108S108FtCCtTT130.055556
M108S108StcCtcT33AY.5.40.00083
M108S108FtCctTc23B.10.000018
M108S108FtCCtTT13B.10.000009
M108S108StcCtcT33B.1.2580.0002
M108S108StcCtcT33B.1.5250.000339
M108S108del2TCC--G12All0
M108S108del2TCc--c12All0
M108S108StcCtcT12AY.1020.000027
M108S108StcCtcA12AY.1020.000027
M108S108CtCctGc22AY.1030.000012
M108S108StcCtcT22AY.1160.000574
M108S108StcCtcT12AY.30.00001
M108S108STCcAGc12AY.30.00001
M108S108ATccGcc22AY.430.000009
M108S108StcCtcT22AY.50.000041
M108S108YtCctAc22B.10.000018
M108S108StcCtcT22B.1.1.3890.012121
M108S108StcCtcT22B.1.1790.007519
M108S108PTccCcc22B.1.20.000018
M108S108TTccAcc22B.1.20.000018
M108S108StcCtcA12B.1.2210.000071
M108S108StcCtcT12B.1.2210.000071
M108S108StcCtcT22B.1.258.170.000208
M108S108YtCctAc22B.1.617.20.000008
M108S108StcCtcT22R.10.00018
M108S108StcCtcT110.055556
M108S108StcCtcT11A0.000387
M108S108StcCtcT11A.2.50.000499
M108S108RTCCCGG11All0
M108S108del1tCct-c11All0
M108S108GTCcGGc11All0
M108S108StcCtcT11AY.1000.000046
M108S108RTCCCGG11AY.1180.000063
M108S108StcCtcT11AY.1190.000035
M108S108ATccGcc11AY.1200.000037
M108S108StcCtcA11AY.1200.000037
M108S108StcCtcA11AY.120.10.000321
M108S108StcCtcT11AY.270.000065
M108S108delTCC---11AY.30.00001
M108S108GTCcGGc11AY.30.00001
M108S108TTccAcc11AY.30.00001
M108S108ATccGcc11AY.30.00001
M108S108StcCtcT11AY.4.20.000022
M108S108StcCtcT11AY.400.000964
M108S108TTccAcc11AY.430.000004
M108S108StcCtcA11AY.46.20.000635
M108S108ATccGcc11AY.46.60.000072
M108S108StcCtcT11AY.470.000031
M108S108StcCtcT11AY.550.000917
M108S108PTcCCcT11AY.600.000938
M108S108StcCtcT11AY.610.000105
M108S108StcCtcT11AY.640.000595
M108S108ATccGcc11AY.670.000464
M108S108StcCtcT11AY.680.000274
M108S108StcCtcA11AY.820.001357
M108S108StcCtcT11AY.90.000068
M108S108delTCC---11AY.90.000068
M108S108del2TCC--G11AY.990.001049
M108S108delTCC---11B.10.000009
M108S108PTccCcc11B.10.000009
M108S108CtCctGc11B.1.10.000018
M108S108StcCtcT11B.1.10.000018
M108S108delTCC---11B.1.1.2210.010101
M108S108StcCtcT11B.1.1.280.000311
M108S108StcCtcA11B.1.1.3110.000358
M108S108delTCC---11B.1.1.3720.000689
M108S108TTccAcc11B.1.1.4040.015873
M108S108StcCtcT11B.1.1.4150.05
M108S108TTccAcc11B.1.1.70.000001
M108S108StcCtcT11B.1.1600.000031
M108S108StcCtcT11B.1.177.280.007407
M108S108CtCctGc11B.1.177.730.000566
M108S108StcCtcT11B.1.177.80.000752
M108S108StcCtcT11B.1.177.810.000189
M108S108YtCctAc11B.1.177.810.000189
M108S108ATccGcc11B.1.177.860.000183
M108S108ATccGcc11B.1.20.000009
M108S108del2TCc--c11B.1.20.000009
M108S108FtCctTc11B.1.20.000009
M108S108CtCctGc11B.1.2060.000816
M108S108StcCtcT11B.1.2340.000132
M108S108delTCC---11B.1.258.110.000396
M108S108StcCtcA11B.1.3960.000706
M108S108StcCtcT11B.1.438.10.000107
M108S108StcCtcT11B.1.466.20.000391
M108S108StcCtcT11B.1.5130.013889
M108S108StcCtcT11B.1.5230.002451
M108S108TTccAcc11B.1.5960.000087
M108S108FtCctTc11B.1.5960.000087
M108S108delTCC---11B.1.617.10.000129
M108S108del1tCct-c11B.1.617.10.000129
M108S108FtCctTc11B.1.617.20.000004
M108S108StcCtcT11B.1.6210.000089
M108S108PTccCcc11B.1.6320.006711
M108S108StcCtcT11B.1.6370.000073
M108S108PTccCcc11B.150.017544
M108S108StcCtcT11B.60.00091
M108S108StcCtcT11C.36.30.000567
M108S108PTccCcc11D.20.000075
M108S108StcCtcT11P.1.150.000232