CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 106 | T106T | syn | acG | acT | 5502 | 4619 | 0.839513 | 26838-26840 | |
M | 106 | T106T | syn | acG | acA | 5502 | 868 | 0.157761 | 26838-26840 | |
M | 106 | T106T | syn | acG | acC | 5502 | 15 | 0.00272628 | 26838-26840 | |
M | 106 | T106del | del | ACG | --- | 90 | 90 | 1 | 26838-26840 | |
M | 106 | T106M | nonsyn | aCg | aTg | 49 | 49 | 1 | 26838-26840 | |
M | 106 | T106K | nonsyn | aCg | aAg | 15 | 15 | 1 | 26838-26840 | |
M | 106 | T106S | nonsyn | Acg | Tcg | 15 | 13 | 0.866667 | 26838-26840 | |
M | 106 | T106S | nonsyn | AcG | TcC | 15 | 2 | 0.133333 | 26838-26840 | |
M | 106 | T106R | nonsyn | aCg | aGg | 7 | 6 | 0.857143 | 26838-26840 | |
M | 106 | T106R | nonsyn | aCG | aGA | 7 | 1 | 0.142857 | 26838-26840 | |
M | 106 | T106del1 | del | acG | ac- | 6 | 4 | 0.666667 | 26838-26840 | |
M | 106 | T106del1 | del | ACg | G-g | 6 | 1 | 0.166667 | 26838-26840 | |
M | 106 | T106del1 | del | Acg | -cg | 6 | 1 | 0.166667 | 26838-26840 | |
M | 106 | T106A | nonsyn | Acg | Gcg | 4 | 4 | 1 | 26838-26840 | |
M | 106 | T106E | nonsyn | ACg | GAg | 2 | 2 | 1 | 26838-26840 | |
M | 106 | T106V | nonsyn | ACg | GTg | 2 | 1 | 0.5 | 26838-26840 | |
M | 106 | T106V | nonsyn | ACG | GTT | 2 | 1 | 0.5 | 26838-26840 | |
M | 106 | T106P | nonsyn | Acg | Ccg | 1 | 1 | 1 | 26838-26840 | |
M | 106 | T106X | nonsyn | ACG | TAA | 1 | 1 | 1 | 26838-26840 | |
M | 106 | T106N | nonsyn | aCG | aAT | 1 | 1 | 1 | 26838-26840 | |
M | 106 | T106I | nonsyn | aCG | aTT | 1 | 1 | 1 | 26838-26840 | |
M | 106 | T106L | nonsyn | ACg | TTg | 1 | 1 | 1 | 26838-26840 | |
M | 106 | T106D | nonsyn | ACG | GAT | 1 | 1 | 1 | 26838-26840 | |
M | 106 | T106Q | nonsyn | ACg | CAg | 1 | 1 | 1 | 26838-26840 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 106 | T106T | acG | acT | 4619 | 5502 | All | 0.000883 |
M | 106 | T106T | acG | acA | 868 | 5502 | All | 0.000166 |
M | 106 | T106T | acG | acC | 15 | 5502 | All | 0.000003 |
M | 106 | T106T | acG | acT | 832 | 832 | AY.42 | 0.033471 |
M | 106 | T106T | acG | acT | 710 | 723 | B.1.617.2 | 0.002673 |
M | 106 | T106T | acG | acA | 9 | 723 | B.1.617.2 | 0.000034 |
M | 106 | T106T | acG | acC | 4 | 723 | B.1.617.2 | 0.000015 |
M | 106 | T106T | acG | acT | 560 | 577 | AY.4 | 0.000872 |
M | 106 | T106T | acG | acA | 17 | 577 | AY.4 | 0.000026 |
M | 106 | T106T | acG | acT | 452 | 558 | B.1.1.7 | 0.000405 |
M | 106 | T106T | acG | acA | 106 | 558 | B.1.1.7 | 0.000095 |
M | 106 | T106T | acG | acA | 384 | 384 | B.1.362 | 0.59168 |
M | 106 | T106T | acG | acT | 287 | 288 | B.1.429 | 0.006753 |
M | 106 | T106T | acG | acA | 1 | 288 | B.1.429 | 0.000024 |
M | 106 | T106T | acG | acT | 220 | 229 | AY.103 | 0.001366 |
M | 106 | T106T | acG | acA | 9 | 229 | AY.103 | 0.000056 |
M | 106 | T106T | acG | acT | 223 | 223 | AY.53 | 0.064117 |
M | 106 | T106T | acG | acT | 116 | 127 | B.1.177 | 0.001527 |
M | 106 | T106T | acG | acA | 11 | 127 | B.1.177 | 0.000145 |
M | 106 | T106T | acG | acT | 126 | 126 | B.1.415.1 | 0.954545 |
M | 106 | T106T | acG | acT | 115 | 123 | P.1 | 0.001812 |
M | 106 | T106T | acG | acA | 8 | 123 | P.1 | 0.000126 |
M | 106 | T106del | ACG | --- | 90 | 90 | All | 0.000017 |
M | 106 | T106T | acG | acT | 78 | 80 | AY.43 | 0.000346 |
M | 106 | T106T | acG | acA | 2 | 80 | AY.43 | 0.000009 |
M | 106 | T106del | ACG | --- | 73 | 73 | B.1.177.21 | 0.005582 |
M | 106 | T106T | acG | acA | 49 | 72 | B.1.1 | 0.000889 |
M | 106 | T106T | acG | acT | 23 | 72 | B.1.1 | 0.000417 |
M | 106 | T106T | acG | acA | 61 | 67 | B.1.36 | 0.0089 |
M | 106 | T106T | acG | acT | 6 | 67 | B.1.36 | 0.000875 |
M | 106 | T106T | acG | acA | 34 | 58 | B.1 | 0.000311 |
M | 106 | T106T | acG | acT | 24 | 58 | B.1 | 0.00022 |
M | 106 | T106T | acG | acT | 36 | 50 | AY.44 | 0.000219 |
M | 106 | T106T | acG | acA | 12 | 50 | AY.44 | 0.000073 |
M | 106 | T106T | acG | acC | 2 | 50 | AY.44 | 0.000012 |
M | 106 | T106M | aCg | aTg | 49 | 49 | All | 0.000009 |
M | 106 | T106T | acG | acT | 31 | 47 | AY.20 | 0.001205 |
M | 106 | T106T | acG | acA | 16 | 47 | AY.20 | 0.000622 |
M | 106 | T106T | acG | acT | 38 | 46 | AY.25 | 0.000229 |
M | 106 | T106T | acG | acA | 8 | 46 | AY.25 | 0.000048 |
M | 106 | T106T | acG | acT | 27 | 45 | B.1.2 | 0.000238 |
M | 106 | T106T | acG | acA | 18 | 45 | B.1.2 | 0.000158 |
M | 106 | T106T | acG | acT | 40 | 40 | AY.98 | 0.00316 |
M | 106 | T106T | acG | acT | 27 | 30 | AY.102 | 0.000716 |
M | 106 | T106T | acG | acA | 2 | 30 | AY.102 | 0.000053 |
M | 106 | T106T | acG | acC | 1 | 30 | AY.102 | 0.000027 |
M | 106 | T106T | acG | acT | 29 | 30 | AY.4.2 | 0.000629 |
M | 106 | T106T | acG | acA | 1 | 30 | AY.4.2 | 0.000022 |
M | 106 | T106T | acG | acT | 28 | 29 | B.1.1.519 | 0.001112 |
M | 106 | T106T | acG | acA | 1 | 29 | B.1.1.519 | 0.00004 |
M | 106 | T106T | acG | acT | 27 | 27 | AY.3 | 0.000269 |
M | 106 | T106T | acG | acT | 19 | 25 | AY.119 | 0.000671 |
M | 106 | T106T | acG | acC | 6 | 25 | AY.119 | 0.000212 |
M | 106 | T106T | acG | acT | 23 | 23 | B.1.525 | 0.002603 |
M | 106 | T106T | acG | acT | 21 | 22 | AY.46.6 | 0.001516 |
M | 106 | T106T | acG | acA | 1 | 22 | AY.46.6 | 0.000072 |
M | 106 | T106T | acG | acT | 21 | 21 | C.36 | 0.019126 |
M | 106 | T106T | acG | acT | 18 | 20 | AY.5 | 0.000372 |
M | 106 | T106T | acG | acA | 2 | 20 | AY.5 | 0.000041 |
M | 106 | T106T | acG | acA | 19 | 19 | B.1.1.434 | 0.006623 |
M | 106 | T106T | acG | acT | 19 | 19 | B.1.617.1 | 0.00245 |
M | 106 | T106T | acG | acT | 15 | 16 | AY.39 | 0.000371 |
M | 106 | T106T | acG | acA | 1 | 16 | AY.39 | 0.000025 |
M | 106 | T106T | acG | acA | 11 | 16 | B.1.427 | 0.000555 |
M | 106 | T106T | acG | acT | 5 | 16 | B.1.427 | 0.000252 |
M | 106 | T106K | aCg | aAg | 15 | 15 | All | 0.000003 |
M | 106 | T106S | Acg | Tcg | 13 | 15 | All | 0.000002 |
M | 106 | T106S | AcG | TcC | 2 | 15 | All | 0 |
M | 106 | T106T | acG | acT | 15 | 15 | AY.116 | 0.004302 |
M | 106 | T106T | acG | acA | 9 | 15 | B.1.351 | 0.000268 |
M | 106 | T106T | acG | acT | 6 | 15 | B.1.351 | 0.000178 |
M | 106 | T106T | acG | acT | 14 | 14 | AY.41 | 0.004115 |
M | 106 | T106T | acG | acT | 14 | 14 | AY.86 | 0.011618 |
M | 106 | T106T | acG | acT | 14 | 14 | B.1.36.24 | 0.08642 |
M | 106 | T106T | acG | acT | 14 | 14 | B.1.36.9 | 0.045016 |
M | 106 | T106T | acG | acT | 11 | 13 | AY.118 | 0.000689 |
M | 106 | T106T | acG | acA | 2 | 13 | AY.118 | 0.000125 |
M | 106 | T106T | acG | acA | 12 | 13 | B.1.470 | 0.016854 |
M | 106 | T106T | acG | acT | 1 | 13 | B.1.470 | 0.001404 |
M | 106 | T106T | acG | acT | 11 | 11 | AY.23 | 0.000767 |
M | 106 | T106T | acG | acT | 11 | 11 | AY.26 | 0.000311 |
M | 106 | T106T | acG | acT | 10 | 10 | AY.121 | 0.001353 |
M | 106 | T106T | acG | acA | 8 | 10 | B.1.160 | 0.00025 |
M | 106 | T106T | acG | acT | 2 | 10 | B.1.160 | 0.000062 |
M | 106 | T106T | acG | acT | 9 | 9 | AY.9.2 | 0.000331 |
M | 106 | T106del | ACG | --- | 9 | 9 | B.1.1.7 | 0.000008 |
M | 106 | T106T | acG | acT | 9 | 9 | B.1.621.1 | 0.004552 |
M | 106 | T106T | acG | acT | 8 | 8 | AY.52 | 0.006515 |
M | 106 | T106T | acG | acA | 5 | 8 | AY.75 | 0.00028 |
M | 106 | T106T | acG | acT | 3 | 8 | AY.75 | 0.000168 |
M | 106 | T106T | acG | acT | 8 | 8 | B.1.1.305 | 0.030888 |
M | 106 | T106T | acG | acT | 7 | 8 | B.1.258 | 0.000466 |
M | 106 | T106T | acG | acA | 1 | 8 | B.1.258 | 0.000067 |
M | 106 | T106T | acG | acA | 8 | 8 | B.1.422 | 0.006499 |
M | 106 | T106R | aCg | aGg | 6 | 7 | All | 0.000001 |
M | 106 | T106R | aCG | aGA | 1 | 7 | All | 0 |
M | 106 | T106T | acG | acT | 7 | 7 | AY.85 | 0.00299 |
M | 106 | T106T | acG | acT | 7 | 7 | AY.9.1 | 0.000586 |
M | 106 | T106T | acG | acT | 6 | 7 | B.1.177.7 | 0.000989 |
M | 106 | T106T | acG | acA | 1 | 7 | B.1.177.7 | 0.000165 |
M | 106 | T106del1 | acG | ac- | 4 | 6 | All | 0.000001 |
M | 106 | T106del1 | Acg | -cg | 1 | 6 | All | 0 |
M | 106 | T106del1 | ACg | G-g | 1 | 6 | All | 0 |
M | 106 | T106T | acG | acT | 6 | 6 | AY.12 | 0.001896 |
M | 106 | T106T | acG | acT | 6 | 6 | AY.39.1 | 0.000238 |
M | 106 | T106T | acG | acT | 5 | 6 | AY.46 | 0.00052 |
M | 106 | T106T | acG | acA | 1 | 6 | AY.46 | 0.000104 |
M | 106 | T106T | acG | acT | 6 | 6 | AY.73 | 0.003992 |
M | 106 | T106T | acG | acT | 6 | 6 | AY.92 | 0.001724 |
M | 106 | T106T | acG | acT | 6 | 6 | AY.99.2 | 0.000553 |
M | 106 | T106M | aCg | aTg | 6 | 6 | B.1 | 0.000055 |
M | 106 | T106T | acG | acT | 5 | 6 | B.1.1.214 | 0.000277 |
M | 106 | T106T | acG | acA | 1 | 6 | B.1.1.214 | 0.000055 |
M | 106 | T106T | acG | acT | 5 | 6 | B.1.596 | 0.000436 |
M | 106 | T106T | acG | acA | 1 | 6 | B.1.596 | 0.000087 |
M | 106 | T106S | Acg | Tcg | 3 | 5 | 0.166667 | |
M | 106 | T106S | AcG | TcC | 2 | 5 | 0.111111 | |
M | 106 | T106T | acG | acT | 3 | 5 | AY.29 | 0.000047 |
M | 106 | T106T | acG | acA | 2 | 5 | AY.29 | 0.000032 |
M | 106 | T106T | acG | acT | 5 | 5 | AY.34 | 0.000485 |
M | 106 | T106T | acG | acT | 5 | 5 | AY.4.5 | 0.000537 |
M | 106 | T106T | acG | acT | 5 | 5 | AY.61 | 0.000524 |
M | 106 | T106T | acG | acT | 5 | 5 | B.1.526 | 0.000118 |
M | 106 | T106T | acG | acT | 4 | 5 | B.1.637 | 0.000292 |
M | 106 | T106T | acG | acA | 1 | 5 | B.1.637 | 0.000073 |
M | 106 | T106T | acG | acT | 5 | 5 | P.1.7 | 0.001596 |
M | 106 | T106T | acG | acT | 4 | 4 | A | 0.001548 |
M | 106 | T106A | Acg | Gcg | 4 | 4 | All | 0.000001 |
M | 106 | T106T | acG | acT | 4 | 4 | AY.105 | 0.002572 |
M | 106 | T106T | acG | acT | 4 | 4 | AY.7.1 | 0.000451 |
M | 106 | T106R | aCg | aGg | 4 | 4 | AY.85 | 0.001709 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.1.279 | 0.004484 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.1.318 | 0.001207 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.1.326 | 0.007042 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.1.371 | 0.041667 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.1.50 | 0.002716 |
M | 106 | T106S | Acg | Tcg | 4 | 4 | B.1.1.519 | 0.000159 |
M | 106 | T106M | aCg | aTg | 4 | 4 | B.1.1.7 | 0.000004 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.143 | 0.085106 |
M | 106 | T106T | acG | acT | 4 | 4 | B.1.36.29 | 0.002069 |
M | 106 | T106T | acG | acA | 3 | 4 | B.1.621 | 0.000266 |
M | 106 | T106T | acG | acT | 1 | 4 | B.1.621 | 0.000089 |
M | 106 | T106T | acG | acT | 3 | 4 | C.37 | 0.000348 |
M | 106 | T106T | acG | acA | 1 | 4 | C.37 | 0.000116 |
M | 106 | T106T | acG | acT | 4 | 4 | Q.3 | 0.00058 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.100 | 0.000138 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.120 | 0.000112 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.16 | 0.001139 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.5.3 | 0.001012 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.54 | 0.000286 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.6 | 0.000123 |
M | 106 | T106T | acG | acT | 2 | 3 | AY.74 | 0.000231 |
M | 106 | T106T | acG | acA | 1 | 3 | AY.74 | 0.000116 |
M | 106 | T106T | acG | acT | 3 | 3 | AY.84 | 0.001312 |
M | 106 | T106M | aCg | aTg | 3 | 3 | B.1.1 | 0.000054 |
M | 106 | T106T | acG | acT | 3 | 3 | B.1.241 | 0.002435 |
M | 106 | T106T | acG | acT | 3 | 3 | P.3 | 0.004785 |
M | 106 | T106T | acG | acC | 2 | 2 | 0.111111 | |
M | 106 | T106T | acG | acT | 2 | 2 | A.2.5 | 0.000998 |
M | 106 | T106E | ACg | GAg | 2 | 2 | All | 0 |
M | 106 | T106V | ACG | GTT | 1 | 2 | All | 0 |
M | 106 | T106V | ACg | GTg | 1 | 2 | All | 0 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.101 | 0.000981 |
M | 106 | T106T | acG | acA | 2 | 2 | AY.113 | 0.000285 |
M | 106 | T106T | acG | acA | 2 | 2 | AY.114 | 0.000462 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.116.1 | 0.000623 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.27 | 0.000129 |
M | 106 | T106V | ACg | GTg | 1 | 2 | AY.3 | 0.00001 |
M | 106 | T106V | ACG | GTT | 1 | 2 | AY.3 | 0.00001 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.3.1 | 0.000171 |
M | 106 | T106K | aCg | aAg | 2 | 2 | AY.30 | 0.000791 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.36 | 0.000296 |
M | 106 | T106K | aCg | aAg | 2 | 2 | AY.39 | 0.000049 |
M | 106 | T106K | aCg | aAg | 2 | 2 | AY.43 | 0.000009 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.46.5 | 0.000397 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.51 | 0.001818 |
M | 106 | T106T | acG | acT | 2 | 2 | AY.7 | 0.000392 |
M | 106 | T106M | aCg | aTg | 2 | 2 | AY.75.1 | 0.000361 |
M | 106 | T106K | aCg | aAg | 2 | 2 | AY.85 | 0.000854 |
M | 106 | T106M | aCg | aTg | 2 | 2 | AY.85 | 0.000854 |
M | 106 | T106S | Acg | Tcg | 2 | 2 | B.1 | 0.000018 |
M | 106 | T106T | acG | acA | 1 | 2 | B.1.1.176 | 0.000439 |
M | 106 | T106T | acG | acT | 1 | 2 | B.1.1.176 | 0.000439 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.1.189 | 0.003026 |
M | 106 | T106T | acG | acA | 2 | 2 | B.1.1.226 | 0.011628 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.1.25 | 0.001137 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.1.306 | 0.000877 |
M | 106 | T106T | acG | acA | 2 | 2 | B.1.1.348 | 0.001592 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.1.354 | 0.008772 |
M | 106 | T106S | Acg | Tcg | 2 | 2 | B.1.1.7 | 0.000002 |
M | 106 | T106del1 | acG | ac- | 2 | 2 | B.1.1.7 | 0.000002 |
M | 106 | T106T | acG | acA | 2 | 2 | B.1.111 | 0.00235 |
M | 106 | T106del1 | ACg | G-g | 1 | 2 | B.1.2 | 0.000009 |
M | 106 | T106del1 | acG | ac- | 1 | 2 | B.1.2 | 0.000009 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.221 | 0.000142 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.243 | 0.000139 |
M | 106 | T106T | acG | acA | 2 | 2 | B.1.36.19 | 0.018519 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.369 | 0.00057 |
M | 106 | T106T | acG | acA | 1 | 2 | B.1.466.2 | 0.000391 |
M | 106 | T106T | acG | acT | 1 | 2 | B.1.466.2 | 0.000391 |
M | 106 | T106T | acG | acT | 2 | 2 | B.1.517 | 0.000854 |
M | 106 | T106M | aCg | aTg | 2 | 2 | B.1.596 | 0.000174 |
M | 106 | T106M | aCg | aTg | 2 | 2 | B.1.617.2 | 0.000008 |
M | 106 | T106T | acG | acA | 2 | 2 | B.1.9.5 | 0.011364 |
M | 106 | T106T | acG | acT | 2 | 2 | P.2 | 0.000373 |
M | 106 | T106T | acG | acT | 1 | 2 | Q.1 | 0.000126 |
M | 106 | T106T | acG | acA | 1 | 2 | Q.1 | 0.000126 |
M | 106 | T106T | acG | acT | 2 | 2 | Q.8 | 0.00033 |
M | 106 | T106M | aCg | aTg | 1 | 1 | A.1 | 0.000282 |
M | 106 | T106T | acG | acA | 1 | 1 | A.23.1 | 0.000704 |
M | 106 | T106T | acG | acT | 1 | 1 | AD.2 | 0.000219 |
M | 106 | T106P | Acg | Ccg | 1 | 1 | All | 0 |
M | 106 | T106I | aCG | aTT | 1 | 1 | All | 0 |
M | 106 | T106N | aCG | aAT | 1 | 1 | All | 0 |
M | 106 | T106L | ACg | TTg | 1 | 1 | All | 0 |
M | 106 | T106D | ACG | GAT | 1 | 1 | All | 0 |
M | 106 | T106Q | ACg | CAg | 1 | 1 | All | 0 |
M | 106 | T106X | ACG | TAA | 1 | 1 | All | 0 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.103 | 0.000006 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.11 | 0.001339 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.118 | 0.000063 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.15 | 0.002222 |
M | 106 | T106T | acG | acA | 1 | 1 | AY.16.1 | 0.00047 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.25 | 0.000006 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.25 | 0.000006 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.27 | 0.000065 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.3 | 0.00001 |
M | 106 | T106N | aCG | aAT | 1 | 1 | AY.3 | 0.00001 |
M | 106 | T106E | ACg | GAg | 1 | 1 | AY.3 | 0.00001 |
M | 106 | T106D | ACG | GAT | 1 | 1 | AY.3 | 0.00001 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.3 | 0.00001 |
M | 106 | T106I | aCG | aTT | 1 | 1 | AY.3 | 0.00001 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.30 | 0.000396 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.33 | 0.000067 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.39.1 | 0.00004 |
M | 106 | T106del1 | Acg | -cg | 1 | 1 | AY.4 | 0.000002 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.4.2 | 0.000022 |
M | 106 | T106A | Acg | Gcg | 1 | 1 | AY.43 | 0.000004 |
M | 106 | T106E | ACg | GAg | 1 | 1 | AY.43 | 0.000004 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.46 | 0.000104 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.46.2 | 0.000635 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.46.4 | 0.000165 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.47 | 0.000031 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.48 | 0.000465 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.55 | 0.000917 |
M | 106 | T106Q | ACg | CAg | 1 | 1 | AY.60 | 0.000938 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.62 | 0.000436 |
M | 106 | T106K | aCg | aAg | 1 | 1 | AY.67 | 0.000464 |
M | 106 | T106A | Acg | Gcg | 1 | 1 | AY.67 | 0.000464 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.68 | 0.000274 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.69 | 0.000187 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.70 | 0.000209 |
M | 106 | T106P | Acg | Ccg | 1 | 1 | AY.75 | 0.000056 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.75.1 | 0.00018 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.77 | 0.001127 |
M | 106 | T106R | aCg | aGg | 1 | 1 | AY.79 | 0.001211 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.9 | 0.000068 |
M | 106 | T106del | ACG | --- | 1 | 1 | AY.9 | 0.000068 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.91 | 0.00073 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.98.1 | 0.000048 |
M | 106 | T106R | aCG | aGA | 1 | 1 | AY.99 | 0.001049 |
M | 106 | T106T | acG | acT | 1 | 1 | AY.99 | 0.001049 |
M | 106 | T106M | aCg | aTg | 1 | 1 | AY.99.2 | 0.000092 |
M | 106 | T106A | Acg | Gcg | 1 | 1 | B.1 | 0.000009 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1 | 0.000009 |
M | 106 | T106X | ACG | TAA | 1 | 1 | B.1 | 0.000009 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.1.198 | 0.001468 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.219 | 0.005 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1.1.221 | 0.010101 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.222 | 0.000204 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.240 | 0.004695 |
M | 106 | T106del1 | acG | ac- | 1 | 1 | B.1.1.25 | 0.000569 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.261 | 0.008621 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.28 | 0.000311 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1.1.288 | 0.001916 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.301 | 0.001179 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.303 | 0.002762 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.306 | 0.000438 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.33 | 0.000421 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.356 | 0.008547 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.369 | 0.000446 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1.1.372 | 0.000689 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.1.413 | 0.006897 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.432 | 0.001266 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.1.440 | 0.011765 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.1.484 | 0.1 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.486 | 0.001577 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.1.50 | 0.000679 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.113 | 0.015625 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.14 | 0.017544 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.177.41 | 0.0025 |
M | 106 | T106L | ACg | TTg | 1 | 1 | B.1.177.65 | 0.000665 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1.2 | 0.000009 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.23 | 0.006061 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.234 | 0.000132 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1.258.11 | 0.000396 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.258.17 | 0.000104 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.351 | 0.00003 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.351.3 | 0.000876 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.36.10 | 0.004785 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.36.18 | 0.00042 |
M | 106 | T106T | acG | acA | 1 | 1 | B.1.375 | 0.00082 |
M | 106 | T106R | aCg | aGg | 1 | 1 | B.1.391 | 0.001127 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.411 | 0.003704 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.427 | 0.00005 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.428 | 0.00102 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.465 | 0.003802 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.525 | 0.000113 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.526 | 0.000024 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.540 | 0.009709 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.551 | 0.00129 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.575.2 | 0.004808 |
M | 106 | T106S | Acg | Tcg | 1 | 1 | B.1.576 | 0.000907 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.588 | 0.00091 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.1.589 | 0.007576 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.599 | 0.00365 |
M | 106 | T106del | ACG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
M | 106 | T106T | acG | acT | 1 | 1 | B.1.627 | 0.00202 |
M | 106 | T106S | Acg | Tcg | 1 | 1 | B.1.8 | 0.001972 |
M | 106 | T106M | aCg | aTg | 1 | 1 | B.20 | 0.023256 |
M | 106 | T106T | acG | acT | 1 | 1 | B.39 | 0.002331 |
M | 106 | T106T | acG | acT | 1 | 1 | B.40 | 0.000364 |
M | 106 | T106T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
M | 106 | T106T | acG | acT | 1 | 1 | D.2 | 0.000075 |
M | 106 | T106T | acG | acA | 1 | 1 | N.9 | 0.005952 |
M | 106 | T106A | Acg | Gcg | 1 | 1 | P.1 | 0.000016 |
M | 106 | T106T | acG | acT | 1 | 1 | P.1.12 | 0.000484 |
M | 106 | T106T | acG | acT | 1 | 1 | P.1.14 | 0.000048 |
M | 106 | T106T | acG | acA | 1 | 1 | P.1.15 | 0.000232 |
M | 106 | T106T | acG | acT | 1 | 1 | P.7 | 0.004367 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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