CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 106

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M106T106TsynacGacT550246190.83951326838-26840
M106T106TsynacGacA55028680.15776126838-26840
M106T106TsynacGacC5502150.0027262826838-26840
M106T106deldelACG---9090126838-26840
M106T106MnonsynaCgaTg4949126838-26840
M106T106KnonsynaCgaAg1515126838-26840
M106T106SnonsynAcgTcg15130.86666726838-26840
M106T106SnonsynAcGTcC1520.13333326838-26840
M106T106RnonsynaCgaGg760.85714326838-26840
M106T106RnonsynaCGaGA710.14285726838-26840
M106T106del1delacGac-640.66666726838-26840
M106T106del1delACgG-g610.16666726838-26840
M106T106del1delAcg-cg610.16666726838-26840
M106T106AnonsynAcgGcg44126838-26840
M106T106EnonsynACgGAg22126838-26840
M106T106VnonsynACgGTg210.526838-26840
M106T106VnonsynACGGTT210.526838-26840
M106T106PnonsynAcgCcg11126838-26840
M106T106XnonsynACGTAA11126838-26840
M106T106NnonsynaCGaAT11126838-26840
M106T106InonsynaCGaTT11126838-26840
M106T106LnonsynACgTTg11126838-26840
M106T106DnonsynACGGAT11126838-26840
M106T106QnonsynACgCAg11126838-26840

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M106T106TacGacT46195502All0.000883
M106T106TacGacA8685502All0.000166
M106T106TacGacC155502All0.000003
M106T106TacGacT832832AY.420.033471
M106T106TacGacT710723B.1.617.20.002673
M106T106TacGacA9723B.1.617.20.000034
M106T106TacGacC4723B.1.617.20.000015
M106T106TacGacT560577AY.40.000872
M106T106TacGacA17577AY.40.000026
M106T106TacGacT452558B.1.1.70.000405
M106T106TacGacA106558B.1.1.70.000095
M106T106TacGacA384384B.1.3620.59168
M106T106TacGacT287288B.1.4290.006753
M106T106TacGacA1288B.1.4290.000024
M106T106TacGacT220229AY.1030.001366
M106T106TacGacA9229AY.1030.000056
M106T106TacGacT223223AY.530.064117
M106T106TacGacT116127B.1.1770.001527
M106T106TacGacA11127B.1.1770.000145
M106T106TacGacT126126B.1.415.10.954545
M106T106TacGacT115123P.10.001812
M106T106TacGacA8123P.10.000126
M106T106delACG---9090All0.000017
M106T106TacGacT7880AY.430.000346
M106T106TacGacA280AY.430.000009
M106T106delACG---7373B.1.177.210.005582
M106T106TacGacA4972B.1.10.000889
M106T106TacGacT2372B.1.10.000417
M106T106TacGacA6167B.1.360.0089
M106T106TacGacT667B.1.360.000875
M106T106TacGacA3458B.10.000311
M106T106TacGacT2458B.10.00022
M106T106TacGacT3650AY.440.000219
M106T106TacGacA1250AY.440.000073
M106T106TacGacC250AY.440.000012
M106T106MaCgaTg4949All0.000009
M106T106TacGacT3147AY.200.001205
M106T106TacGacA1647AY.200.000622
M106T106TacGacT3846AY.250.000229
M106T106TacGacA846AY.250.000048
M106T106TacGacT2745B.1.20.000238
M106T106TacGacA1845B.1.20.000158
M106T106TacGacT4040AY.980.00316
M106T106TacGacT2730AY.1020.000716
M106T106TacGacA230AY.1020.000053
M106T106TacGacC130AY.1020.000027
M106T106TacGacT2930AY.4.20.000629
M106T106TacGacA130AY.4.20.000022
M106T106TacGacT2829B.1.1.5190.001112
M106T106TacGacA129B.1.1.5190.00004
M106T106TacGacT2727AY.30.000269
M106T106TacGacT1925AY.1190.000671
M106T106TacGacC625AY.1190.000212
M106T106TacGacT2323B.1.5250.002603
M106T106TacGacT2122AY.46.60.001516
M106T106TacGacA122AY.46.60.000072
M106T106TacGacT2121C.360.019126
M106T106TacGacT1820AY.50.000372
M106T106TacGacA220AY.50.000041
M106T106TacGacA1919B.1.1.4340.006623
M106T106TacGacT1919B.1.617.10.00245
M106T106TacGacT1516AY.390.000371
M106T106TacGacA116AY.390.000025
M106T106TacGacA1116B.1.4270.000555
M106T106TacGacT516B.1.4270.000252
M106T106KaCgaAg1515All0.000003
M106T106SAcgTcg1315All0.000002
M106T106SAcGTcC215All0
M106T106TacGacT1515AY.1160.004302
M106T106TacGacA915B.1.3510.000268
M106T106TacGacT615B.1.3510.000178
M106T106TacGacT1414AY.410.004115
M106T106TacGacT1414AY.860.011618
M106T106TacGacT1414B.1.36.240.08642
M106T106TacGacT1414B.1.36.90.045016
M106T106TacGacT1113AY.1180.000689
M106T106TacGacA213AY.1180.000125
M106T106TacGacA1213B.1.4700.016854
M106T106TacGacT113B.1.4700.001404
M106T106TacGacT1111AY.230.000767
M106T106TacGacT1111AY.260.000311
M106T106TacGacT1010AY.1210.001353
M106T106TacGacA810B.1.1600.00025
M106T106TacGacT210B.1.1600.000062
M106T106TacGacT99AY.9.20.000331
M106T106delACG---99B.1.1.70.000008
M106T106TacGacT99B.1.621.10.004552
M106T106TacGacT88AY.520.006515
M106T106TacGacA58AY.750.00028
M106T106TacGacT38AY.750.000168
M106T106TacGacT88B.1.1.3050.030888
M106T106TacGacT78B.1.2580.000466
M106T106TacGacA18B.1.2580.000067
M106T106TacGacA88B.1.4220.006499
M106T106RaCgaGg67All0.000001
M106T106RaCGaGA17All0
M106T106TacGacT77AY.850.00299
M106T106TacGacT77AY.9.10.000586
M106T106TacGacT67B.1.177.70.000989
M106T106TacGacA17B.1.177.70.000165
M106T106del1acGac-46All0.000001
M106T106del1Acg-cg16All0
M106T106del1ACgG-g16All0
M106T106TacGacT66AY.120.001896
M106T106TacGacT66AY.39.10.000238
M106T106TacGacT56AY.460.00052
M106T106TacGacA16AY.460.000104
M106T106TacGacT66AY.730.003992
M106T106TacGacT66AY.920.001724
M106T106TacGacT66AY.99.20.000553
M106T106MaCgaTg66B.10.000055
M106T106TacGacT56B.1.1.2140.000277
M106T106TacGacA16B.1.1.2140.000055
M106T106TacGacT56B.1.5960.000436
M106T106TacGacA16B.1.5960.000087
M106T106SAcgTcg350.166667
M106T106SAcGTcC250.111111
M106T106TacGacT35AY.290.000047
M106T106TacGacA25AY.290.000032
M106T106TacGacT55AY.340.000485
M106T106TacGacT55AY.4.50.000537
M106T106TacGacT55AY.610.000524
M106T106TacGacT55B.1.5260.000118
M106T106TacGacT45B.1.6370.000292
M106T106TacGacA15B.1.6370.000073
M106T106TacGacT55P.1.70.001596
M106T106TacGacT44A0.001548
M106T106AAcgGcg44All0.000001
M106T106TacGacT44AY.1050.002572
M106T106TacGacT44AY.7.10.000451
M106T106RaCgaGg44AY.850.001709
M106T106TacGacT44B.1.1.2790.004484
M106T106TacGacT44B.1.1.3180.001207
M106T106TacGacT44B.1.1.3260.007042
M106T106TacGacT44B.1.1.3710.041667
M106T106TacGacT44B.1.1.500.002716
M106T106SAcgTcg44B.1.1.5190.000159
M106T106MaCgaTg44B.1.1.70.000004
M106T106TacGacT44B.1.1430.085106
M106T106TacGacT44B.1.36.290.002069
M106T106TacGacA34B.1.6210.000266
M106T106TacGacT14B.1.6210.000089
M106T106TacGacT34C.370.000348
M106T106TacGacA14C.370.000116
M106T106TacGacT44Q.30.00058
M106T106TacGacT33AY.1000.000138
M106T106TacGacT33AY.1200.000112
M106T106TacGacT33AY.160.001139
M106T106TacGacT33AY.5.30.001012
M106T106TacGacT33AY.540.000286
M106T106TacGacT33AY.60.000123
M106T106TacGacT23AY.740.000231
M106T106TacGacA13AY.740.000116
M106T106TacGacT33AY.840.001312
M106T106MaCgaTg33B.1.10.000054
M106T106TacGacT33B.1.2410.002435
M106T106TacGacT33P.30.004785
M106T106TacGacC220.111111
M106T106TacGacT22A.2.50.000998
M106T106EACgGAg22All0
M106T106VACGGTT12All0
M106T106VACgGTg12All0
M106T106TacGacT22AY.1010.000981
M106T106TacGacA22AY.1130.000285
M106T106TacGacA22AY.1140.000462
M106T106TacGacT22AY.116.10.000623
M106T106TacGacT22AY.270.000129
M106T106VACgGTg12AY.30.00001
M106T106VACGGTT12AY.30.00001
M106T106TacGacT22AY.3.10.000171
M106T106KaCgaAg22AY.300.000791
M106T106TacGacT22AY.360.000296
M106T106KaCgaAg22AY.390.000049
M106T106KaCgaAg22AY.430.000009
M106T106TacGacT22AY.46.50.000397
M106T106TacGacT22AY.510.001818
M106T106TacGacT22AY.70.000392
M106T106MaCgaTg22AY.75.10.000361
M106T106KaCgaAg22AY.850.000854
M106T106MaCgaTg22AY.850.000854
M106T106SAcgTcg22B.10.000018
M106T106TacGacA12B.1.1.1760.000439
M106T106TacGacT12B.1.1.1760.000439
M106T106TacGacT22B.1.1.1890.003026
M106T106TacGacA22B.1.1.2260.011628
M106T106TacGacT22B.1.1.250.001137
M106T106TacGacT22B.1.1.3060.000877
M106T106TacGacA22B.1.1.3480.001592
M106T106TacGacT22B.1.1.3540.008772
M106T106SAcgTcg22B.1.1.70.000002
M106T106del1acGac-22B.1.1.70.000002
M106T106TacGacA22B.1.1110.00235
M106T106del1ACgG-g12B.1.20.000009
M106T106del1acGac-12B.1.20.000009
M106T106TacGacT22B.1.2210.000142
M106T106TacGacT22B.1.2430.000139
M106T106TacGacA22B.1.36.190.018519
M106T106TacGacT22B.1.3690.00057
M106T106TacGacA12B.1.466.20.000391
M106T106TacGacT12B.1.466.20.000391
M106T106TacGacT22B.1.5170.000854
M106T106MaCgaTg22B.1.5960.000174
M106T106MaCgaTg22B.1.617.20.000008
M106T106TacGacA22B.1.9.50.011364
M106T106TacGacT22P.20.000373
M106T106TacGacT12Q.10.000126
M106T106TacGacA12Q.10.000126
M106T106TacGacT22Q.80.00033
M106T106MaCgaTg11A.10.000282
M106T106TacGacA11A.23.10.000704
M106T106TacGacT11AD.20.000219
M106T106PAcgCcg11All0
M106T106IaCGaTT11All0
M106T106NaCGaAT11All0
M106T106LACgTTg11All0
M106T106DACGGAT11All0
M106T106QACgCAg11All0
M106T106XACGTAA11All0
M106T106MaCgaTg11AY.1030.000006
M106T106MaCgaTg11AY.110.001339
M106T106MaCgaTg11AY.1180.000063
M106T106TacGacT11AY.150.002222
M106T106TacGacA11AY.16.10.00047
M106T106MaCgaTg11AY.250.000006
M106T106KaCgaAg11AY.250.000006
M106T106MaCgaTg11AY.270.000065
M106T106KaCgaAg11AY.30.00001
M106T106NaCGaAT11AY.30.00001
M106T106EACgGAg11AY.30.00001
M106T106DACGGAT11AY.30.00001
M106T106MaCgaTg11AY.30.00001
M106T106IaCGaTT11AY.30.00001
M106T106MaCgaTg11AY.300.000396
M106T106TacGacT11AY.330.000067
M106T106KaCgaAg11AY.39.10.00004
M106T106del1Acg-cg11AY.40.000002
M106T106MaCgaTg11AY.4.20.000022
M106T106AAcgGcg11AY.430.000004
M106T106EACgGAg11AY.430.000004
M106T106KaCgaAg11AY.460.000104
M106T106TacGacT11AY.46.20.000635
M106T106KaCgaAg11AY.46.40.000165
M106T106KaCgaAg11AY.470.000031
M106T106TacGacT11AY.480.000465
M106T106TacGacT11AY.550.000917
M106T106QACgCAg11AY.600.000938
M106T106TacGacT11AY.620.000436
M106T106KaCgaAg11AY.670.000464
M106T106AAcgGcg11AY.670.000464
M106T106TacGacT11AY.680.000274
M106T106TacGacT11AY.690.000187
M106T106TacGacT11AY.700.000209
M106T106PAcgCcg11AY.750.000056
M106T106TacGacT11AY.75.10.00018
M106T106TacGacT11AY.770.001127
M106T106RaCgaGg11AY.790.001211
M106T106MaCgaTg11AY.90.000068
M106T106delACG---11AY.90.000068
M106T106TacGacT11AY.910.00073
M106T106TacGacT11AY.98.10.000048
M106T106RaCGaGA11AY.990.001049
M106T106TacGacT11AY.990.001049
M106T106MaCgaTg11AY.99.20.000092
M106T106AAcgGcg11B.10.000009
M106T106delACG---11B.10.000009
M106T106XACGTAA11B.10.000009
M106T106TacGacA11B.1.1.1980.001468
M106T106TacGacT11B.1.1.2190.005
M106T106delACG---11B.1.1.2210.010101
M106T106TacGacT11B.1.1.2220.000204
M106T106MaCgaTg11B.1.1.2400.004695
M106T106del1acGac-11B.1.1.250.000569
M106T106TacGacT11B.1.1.2610.008621
M106T106TacGacT11B.1.1.280.000311
M106T106delACG---11B.1.1.2880.001916
M106T106MaCgaTg11B.1.1.3010.001179
M106T106TacGacT11B.1.1.3030.002762
M106T106MaCgaTg11B.1.1.3060.000438
M106T106MaCgaTg11B.1.1.330.000421
M106T106MaCgaTg11B.1.1.3560.008547
M106T106TacGacT11B.1.1.3690.000446
M106T106delACG---11B.1.1.3720.000689
M106T106TacGacA11B.1.1.4130.006897
M106T106TacGacT11B.1.1.4320.001266
M106T106TacGacT11B.1.1.4400.011765
M106T106TacGacA11B.1.1.4840.1
M106T106MaCgaTg11B.1.1.4860.001577
M106T106MaCgaTg11B.1.1.500.000679
M106T106TacGacT11B.1.1130.015625
M106T106MaCgaTg11B.1.140.017544
M106T106MaCgaTg11B.1.177.410.0025
M106T106LACgTTg11B.1.177.650.000665
M106T106delACG---11B.1.20.000009
M106T106MaCgaTg11B.1.230.006061
M106T106TacGacT11B.1.2340.000132
M106T106delACG---11B.1.258.110.000396
M106T106TacGacA11B.1.258.170.000104
M106T106MaCgaTg11B.1.3510.00003
M106T106TacGacA11B.1.351.30.000876
M106T106TacGacT11B.1.36.100.004785
M106T106TacGacA11B.1.36.180.00042
M106T106TacGacA11B.1.3750.00082
M106T106RaCgaGg11B.1.3910.001127
M106T106TacGacT11B.1.4110.003704
M106T106MaCgaTg11B.1.4270.00005
M106T106TacGacT11B.1.4280.00102
M106T106TacGacT11B.1.4650.003802
M106T106MaCgaTg11B.1.5250.000113
M106T106MaCgaTg11B.1.5260.000024
M106T106TacGacT11B.1.5400.009709
M106T106TacGacT11B.1.5510.00129
M106T106TacGacT11B.1.575.20.004808
M106T106SAcgTcg11B.1.5760.000907
M106T106MaCgaTg11B.1.5880.00091
M106T106MaCgaTg11B.1.5890.007576
M106T106TacGacT11B.1.5990.00365
M106T106delACG---11B.1.617.10.000129
M106T106TacGacT11B.1.6270.00202
M106T106SAcgTcg11B.1.80.001972
M106T106MaCgaTg11B.200.023256
M106T106TacGacT11B.390.002331
M106T106TacGacT11B.400.000364
M106T106TacGacT11C.36.30.000567
M106T106TacGacT11D.20.000075
M106T106TacGacA11N.90.005952
M106T106AAcgGcg11P.10.000016
M106T106TacGacT11P.1.120.000484
M106T106TacGacT11P.1.140.000048
M106T106TacGacA11P.1.150.000232
M106T106TacGacT11P.70.004367