CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = E : Mut = V62F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
E	62	V62F		nonsyn	Gtt	Ttt	11354	11353	0.999912	26428-26430
E	62	V62F		nonsyn	GtT	TtC	11354	1	0.0000880747	26428-26430

Details of the mutation V62F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
E	62	V62F	Gtt	Ttt	11353	11354	All	0.002171
E	62	V62F	GtT	TtC	1	11354	All	0
E	62	V62F	Gtt	Ttt	2149	2149	AY.85	0.917984
E	62	V62F	Gtt	Ttt	1988	1988	B.1.617.2	0.007486
E	62	V62F	Gtt	Ttt	1268	1268	B.1.1.7	0.001135
E	62	V62F	Gtt	Ttt	739	739	AY.52	0.601792
E	62	V62F	Gtt	Ttt	682	682	AY.44	0.004151
E	62	V62F	Gtt	Ttt	574	574	AY.43	0.002543
E	62	V62F	Gtt	Ttt	476	476	AY.4	0.000741
E	62	V62F	Gtt	Ttt	329	329	AY.103	0.002043
E	62	V62F	Gtt	Ttt	220	220	AY.9	0.014871
E	62	V62F	Gtt	Ttt	183	183	B.1.160	0.005707
E	62	V62F	Gtt	Ttt	152	152	AY.102	0.00403
E	62	V62F	Gtt	Ttt	123	123	AY.119	0.004343
E	62	V62F	Gtt	Ttt	116	116	AY.16.1	0.054511
E	62	V62F	Gtt	Ttt	77	77	AY.29	0.001215
E	62	V62F	Gtt	Ttt	76	76	B.1.1	0.001379
E	62	V62F	Gtt	Ttt	73	73	AY.39	0.001804
E	62	V62F	Gtt	Ttt	70	70	B.1	0.000641
E	62	V62F	Gtt	Ttt	70	70	B.1.177	0.000922
E	62	V62F	Gtt	Ttt	69	69	AY.3	0.000686
E	62	V62F	Gtt	Ttt	68	68	P.1	0.001071
E	62	V62F	Gtt	Ttt	67	67	AY.109	0.049556
E	62	V62F	Gtt	Ttt	67	67	B.1.1.214	0.003716
E	62	V62F	Gtt	Ttt	58	58	B.1.2	0.000511
E	62	V62F	Gtt	Ttt	56	56	AY.98.1	0.002712
E	62	V62F	Gtt	Ttt	52	52	AY.25	0.000313
E	62	V62F	Gtt	Ttt	50	50	AY.26	0.001416
E	62	V62F	Gtt	Ttt	45	45	AY.117	0.003803
E	62	V62F	Gtt	Ttt	44	44	AY.116.1	0.013703
E	62	V62F	Gtt	Ttt	44	44	AY.32	0.023429
E	62	V62F	Gtt	Ttt	41	41	D.2	0.003077
E	62	V62F	Gtt	Ttt	33	33	AY.4.2	0.000716
E	62	V62F	Gtt	Ttt	33	33	AY.48	0.015349
E	62	V62F	Gtt	Ttt	30	30	AY.20	0.001166
E	62	V62F	Gtt	Ttt	29	29	AY.4.4	0.011866
E	62	V62F	Gtt	Ttt	29	29	AY.5	0.000599
E	62	V62F	Gtt	Ttt	26	26	AY.30	0.010289
E	62	V62F	Gtt	Ttt	26	26	AY.62	0.011329
E	62	V62F	Gtt	Ttt	25	25	AY.13	0.004024
E	62	V62F	Gtt	Ttt	25	25	B.1.1.291	0.01856
E	62	V62F	Gtt	Ttt	24	24	AY.120	0.000892
E	62	V62F	Gtt	Ttt	24	24	AY.46	0.002498
E	62	V62F	Gtt	Ttt	24	24	AY.86	0.019917
E	62	V62F	Gtt	Ttt	22	22	AY.98	0.001738
E	62	V62F	Gtt	Ttt	22	22	C.37	0.002553
E	62	V62F	Gtt	Ttt	19	19	AY.33	0.001269
E	62	V62F	Gtt	Ttt	19	19	B.1.311	0.005217
E	62	V62F	Gtt	Ttt	19	19	B.1.617.1	0.00245
E	62	V62F	Gtt	Ttt	18	18	AY.100	0.000828
E	62	V62F	Gtt	Ttt	18	18	AY.110	0.002028
E	62	V62F	Gtt	Ttt	18	18	AY.6	0.00074
E	62	V62F	Gtt	Ttt	16	16	AY.121	0.002165
E	62	V62F	Gtt	Ttt	16	16	B.1.221	0.001137
E	62	V62F	Gtt	Ttt	16	16	B.1.239	0.019536
E	62	V62F	Gtt	Ttt	15	15	AY.68	0.004106
E	62	V62F	Gtt	Ttt	14	14	A.2.5	0.006986
E	62	V62F	Gtt	Ttt	14	14	AY.59	0.007415
E	62	V62F	Gtt	Ttt	14	14	AY.61	0.001467
E	62	V62F	Gtt	Ttt	14	14	AY.9.1	0.001172
E	62	V62F	Gtt	Ttt	14	14	B.1.526	0.000329
E	62	V62F	Gtt	Ttt	14	14	P.2	0.002613
E	62	V62F	Gtt	Ttt	13	13	AY.9.2	0.000477
E	62	V62F	Gtt	Ttt	12	12	AY.41	0.003527
E	62	V62F	Gtt	Ttt	12	12	AY.55	0.011009
E	62	V62F	Gtt	Ttt	12	12	B.1.561	0.004764
E	62	V62F	Gtt	Ttt	11	11	AY.74	0.001272
E	62	V62F	Gtt	Ttt	11	11	B.1.1.207	0.013002
E	62	V62F	Gtt	Ttt	11	11	B.1.1.519	0.000437
E	62	V62F	Gtt	Ttt	11	11	B.1.525	0.001245
E	62	V62F	Gtt	Ttt	11	11	Q.3	0.001595
E	62	V62F	Gtt	Ttt	10	10	AY.116	0.002868
E	62	V62F	Gtt	Ttt	10	10	AY.12	0.003161
E	62	V62F	Gtt	Ttt	10	10	AY.45	0.001217
E	62	V62F	Gtt	Ttt	10	10	B.1.1.317	0.004117
E	62	V62F	Gtt	Ttt	10	10	B.1.524	0.014065
E	62	V62F	Gtt	Ttt	10	10	B.1.637	0.000731
E	62	V62F	Gtt	Ttt	9	9	AY.23	0.000628
E	62	V62F	Gtt	Ttt	9	9	AY.42	0.000362
E	62	V62F	Gtt	Ttt	9	9	AY.47	0.00028
E	62	V62F	Gtt	Ttt	9	9	AY.54	0.000858
E	62	V62F	Gtt	Ttt	9	9	AY.67	0.004178
E	62	V62F	Gtt	Ttt	9	9	AY.99.2	0.000829
E	62	V62F	Gtt	Ttt	8	8	AY.118	0.000501
E	62	V62F	Gtt	Ttt	8	8	AY.27	0.000518
E	62	V62F	Gtt	Ttt	8	8	AY.4.5	0.00086
E	62	V62F	Gtt	Ttt	8	8	B.1.243	0.000557
E	62	V62F	Gtt	Ttt	7	7	AY.10	0.00371
E	62	V62F	Gtt	Ttt	7	7	B.1.1.318	0.002112
E	62	V62F	Gtt	Ttt	7	7	B.1.177.32	0.009447
E	62	V62F	Gtt	Ttt	7	7	B.1.369	0.001997
E	62	V62F	Gtt	Ttt	7	7	B.1.575	0.002124
E	62	V62F	Gtt	Ttt	7	7	P.1.14	0.000335
E	62	V62F	Gtt	Ttt	7	7	R.1	0.00063
E	62	V62F	Gtt	Ttt	6	6	A.12	1
E	62	V62F	Gtt	Ttt	6	6	AY.19	0.006842
E	62	V62F	Gtt	Ttt	6	6	AY.34.1	0.00306
E	62	V62F	Gtt	Ttt	6	6	AY.36	0.000889
E	62	V62F	Gtt	Ttt	6	6	AY.46.4	0.000987
E	62	V62F	Gtt	Ttt	6	6	AY.75	0.000336
E	62	V62F	Gtt	Ttt	6	6	B.1.1.432	0.007595
E	62	V62F	Gtt	Ttt	6	6	B.1.177.17	0.004926
E	62	V62F	Gtt	Ttt	6	6	B.1.621	0.000531
E	62	V62F	Gtt	Ttt	6	6	Q.8	0.000989
E	62	V62F	Gtt	Ttt	5	5	AY.106	0.001674
E	62	V62F	Gtt	Ttt	5	5	AY.29.1	0.001103
E	62	V62F	Gtt	Ttt	5	5	AY.38	0.002496
E	62	V62F	Gtt	Ttt	5	5	AY.78	0.007704
E	62	V62F	Gtt	Ttt	5	5	B.1.1.25	0.002843
E	62	V62F	Gtt	Ttt	5	5	B.1.177.21	0.000382
E	62	V62F	Gtt	Ttt	5	5	B.1.240	0.001078
E	62	V62F	Gtt	Ttt	5	5	B.1.427	0.000252
E	62	V62F	Gtt	Ttt	5	5	B.1.429	0.000118
E	62	V62F	Gtt	Ttt	5	5	B.1.596	0.000436
E	62	V62F	Gtt	Ttt	5	5	B.1.625	0.011765
E	62	V62F	Gtt	Ttt	5	5	P.1.16	0.001871
E	62	V62F	Gtt	Ttt	4	4	AY.113	0.00057
E	62	V62F	Gtt	Ttt	4	4	AY.40	0.003857
E	62	V62F	Gtt	Ttt	4	4	AY.83	0.006897
E	62	V62F	Gtt	Ttt	4	4	AY.84	0.00175
E	62	V62F	Gtt	Ttt	4	4	B.1.1.244	0.061538
E	62	V62F	Gtt	Ttt	4	4	B.1.1.28	0.001245
E	62	V62F	Gtt	Ttt	4	4	B.1.232	0.002149
E	62	V62F	Gtt	Ttt	4	4	B.1.36.17	0.001976
E	62	V62F	Gtt	Ttt	4	4	B.1.628	0.001409
E	62	V62F	Gtt	Ttt	3	3	AE.8	0.001467
E	62	V62F	Gtt	Ttt	3	3	AY.3.1	0.000256
E	62	V62F	Gtt	Ttt	3	3	AY.46.2	0.001906
E	62	V62F	Gtt	Ttt	3	3	AY.53	0.000863
E	62	V62F	Gtt	Ttt	3	3	AY.64	0.001786
E	62	V62F	Gtt	Ttt	3	3	AY.7	0.000588
E	62	V62F	Gtt	Ttt	3	3	AY.75.1	0.000541
E	62	V62F	Gtt	Ttt	3	3	AY.91	0.002191
E	62	V62F	Gtt	Ttt	3	3	AY.92	0.000862
E	62	V62F	Gtt	Ttt	3	3	AY.93	0.000819
E	62	V62F	Gtt	Ttt	3	3	B	0.000383
E	62	V62F	Gtt	Ttt	3	3	B.1.1.1	0.00098
E	62	V62F	Gtt	Ttt	3	3	B.1.1.222	0.000612
E	62	V62F	Gtt	Ttt	3	3	B.1.1.33	0.001263
E	62	V62F	Gtt	Ttt	3	3	B.1.1.57	0.034483
E	62	V62F	Gtt	Ttt	3	3	B.1.189	0.012876
E	62	V62F	Gtt	Ttt	3	3	B.1.214.2	0.001799
E	62	V62F	Gtt	Ttt	3	3	B.1.36.22	0.003623
E	62	V62F	Gtt	Ttt	3	3	B.1.36.29	0.001552
E	62	V62F	Gtt	Ttt	3	3	B.1.396	0.002117
E	62	V62F	Gtt	Ttt	3	3	B.1.400	0.001287
E	62	V62F	Gtt	Ttt	3	3	B.1.422	0.002437
E	62	V62F	Gtt	Ttt	3	3	B.1.466.2	0.001174
E	62	V62F	Gtt	Ttt	3	3	C.36.3	0.001702
E	62	V62F	Gtt	Ttt	3	3	P.1.15	0.000697
E	62	V62F	Gtt	Ttt	3	3	P.1.17	0.000485
E	62	V62F	Gtt	Ttt	1	2		0.055556
E	62	V62F	GtT	TtC	1	2		0.055556
E	62	V62F	Gtt	Ttt	2	2	AN.1	0.04
E	62	V62F	Gtt	Ttt	2	2	AY.101	0.000981
E	62	V62F	Gtt	Ttt	2	2	AY.104	0.003968
E	62	V62F	Gtt	Ttt	2	2	AY.107	0.000932
E	62	V62F	Gtt	Ttt	2	2	AY.21	0.003795
E	62	V62F	Gtt	Ttt	2	2	AY.28	0.003781
E	62	V62F	Gtt	Ttt	2	2	AY.34	0.000194
E	62	V62F	Gtt	Ttt	2	2	AY.37	0.000632
E	62	V62F	Gtt	Ttt	2	2	AY.39.1	0.000079
E	62	V62F	Gtt	Ttt	2	2	AY.46.1	0.002053
E	62	V62F	Gtt	Ttt	2	2	AY.46.6	0.000144
E	62	V62F	Gtt	Ttt	2	2	AY.49	0.00639
E	62	V62F	Gtt	Ttt	2	2	AY.5.3	0.000675
E	62	V62F	Gtt	Ttt	2	2	AY.5.4	0.000553
E	62	V62F	Gtt	Ttt	2	2	AY.51	0.001818
E	62	V62F	Gtt	Ttt	2	2	AY.7.1	0.000225
E	62	V62F	Gtt	Ttt	2	2	AY.71	0.00095
E	62	V62F	Gtt	Ttt	2	2	AY.77	0.002255
E	62	V62F	Gtt	Ttt	2	2	AY.97	0.003401
E	62	V62F	Gtt	Ttt	2	2	AZ.5	0.007018
E	62	V62F	Gtt	Ttt	2	2	B.1.1.241	0.004141
E	62	V62F	Gtt	Ttt	2	2	B.1.1.301	0.002358
E	62	V62F	Gtt	Ttt	2	2	B.1.1.306	0.000877
E	62	V62F	Gtt	Ttt	2	2	B.1.1.337	0.007194
E	62	V62F	Gtt	Ttt	2	2	B.1.1.526	0.007092
E	62	V62F	Gtt	Ttt	2	2	B.1.106	0.0625
E	62	V62F	Gtt	Ttt	2	2	B.1.139	0.001466
E	62	V62F	Gtt	Ttt	2	2	B.1.177.33	0.003289
E	62	V62F	Gtt	Ttt	2	2	B.1.177.4	0.000422
E	62	V62F	Gtt	Ttt	2	2	B.1.221.2	0.008032
E	62	V62F	Gtt	Ttt	2	2	B.1.234	0.000264
E	62	V62F	Gtt	Ttt	2	2	B.1.36	0.000292
E	62	V62F	Gtt	Ttt	2	2	B.1.36.1	0.002281
E	62	V62F	Gtt	Ttt	2	2	B.1.91	0.004149
E	62	V62F	Gtt	Ttt	2	2	B.4.7	0.020202
E	62	V62F	Gtt	Ttt	2	2	C.36	0.001821
E	62	V62F	Gtt	Ttt	2	2	N.6	0.014184
E	62	V62F	Gtt	Ttt	2	2	P.1.10	0.000539
E	62	V62F	Gtt	Ttt	1	1	A	0.000387
E	62	V62F	Gtt	Ttt	1	1	A.2	0.000662
E	62	V62F	Gtt	Ttt	1	1	A.2.5.1	0.004808
E	62	V62F	Gtt	Ttt	1	1	A.23.1	0.000704
E	62	V62F	Gtt	Ttt	1	1	AD.2	0.000219
E	62	V62F	Gtt	Ttt	1	1	AU.1	0.001266
E	62	V62F	Gtt	Ttt	1	1	AV.1	0.005051
E	62	V62F	Gtt	Ttt	1	1	AY.108	0.001103
E	62	V62F	Gtt	Ttt	1	1	AY.11	0.001339
E	62	V62F	Gtt	Ttt	1	1	AY.111	0.000183
E	62	V62F	Gtt	Ttt	1	1	AY.16	0.00038
E	62	V62F	Gtt	Ttt	1	1	AY.23.1	0.000417
E	62	V62F	Gtt	Ttt	1	1	AY.24	0.000431
E	62	V62F	Gtt	Ttt	1	1	AY.35	0.000233
E	62	V62F	Gtt	Ttt	1	1	AY.4.3	0.000842
E	62	V62F	Gtt	Ttt	1	1	AY.46.5	0.000198
E	62	V62F	Gtt	Ttt	1	1	AY.56	0.001605
E	62	V62F	Gtt	Ttt	1	1	AY.58	0.000907
E	62	V62F	Gtt	Ttt	1	1	AY.65	0.000533
E	62	V62F	Gtt	Ttt	1	1	AY.73	0.000665
E	62	V62F	Gtt	Ttt	1	1	AY.80	0.001129
E	62	V62F	Gtt	Ttt	1	1	AY.88	0.000884
E	62	V62F	Gtt	Ttt	1	1	AY.95	0.000761
E	62	V62F	Gtt	Ttt	1	1	AY.99.1	0.001553
E	62	V62F	Gtt	Ttt	1	1	B.1.1.163	0.007634
E	62	V62F	Gtt	Ttt	1	1	B.1.1.171	0.003676
E	62	V62F	Gtt	Ttt	1	1	B.1.1.198	0.001468
E	62	V62F	Gtt	Ttt	1	1	B.1.1.200	0.007463
E	62	V62F	Gtt	Ttt	1	1	B.1.1.225	0.007194
E	62	V62F	Gtt	Ttt	1	1	B.1.1.26	0.005236
E	62	V62F	Gtt	Ttt	1	1	B.1.1.277	0.000759
E	62	V62F	Gtt	Ttt	1	1	B.1.1.282	0.011628
E	62	V62F	Gtt	Ttt	1	1	B.1.1.284	0.000107
E	62	V62F	Gtt	Ttt	1	1	B.1.1.294	0.001266
E	62	V62F	Gtt	Ttt	1	1	B.1.1.303	0.002762
E	62	V62F	Gtt	Ttt	1	1	B.1.1.361	0.045455
E	62	V62F	Gtt	Ttt	1	1	B.1.1.363	0.005988
E	62	V62F	Gtt	Ttt	1	1	B.1.1.389	0.006061
E	62	V62F	Gtt	Ttt	1	1	B.1.1.434	0.000349
E	62	V62F	Gtt	Ttt	1	1	B.1.1.5	0.008333
E	62	V62F	Gtt	Ttt	1	1	B.1.1.50	0.000679
E	62	V62F	Gtt	Ttt	1	1	B.1.1.70	0.000341
E	62	V62F	Gtt	Ttt	1	1	B.1.108	0.005814
E	62	V62F	Gtt	Ttt	1	1	B.1.128	0.000635
E	62	V62F	Gtt	Ttt	1	1	B.1.160.14	0.002119
E	62	V62F	Gtt	Ttt	1	1	B.1.160.16	0.000929
E	62	V62F	Gtt	Ttt	1	1	B.1.177.16	0.000664
E	62	V62F	Gtt	Ttt	1	1	B.1.177.18	0.00116
E	62	V62F	Gtt	Ttt	1	1	B.1.177.57	0.000281
E	62	V62F	Gtt	Ttt	1	1	B.1.177.69	0.001484
E	62	V62F	Gtt	Ttt	1	1	B.1.177.81	0.000189
E	62	V62F	Gtt	Ttt	1	1	B.1.177.82	0.000477
E	62	V62F	Gtt	Ttt	1	1	B.1.177.86	0.000183
E	62	V62F	Gtt	Ttt	1	1	B.1.177.87	0.000728
E	62	V62F	Gtt	Ttt	1	1	B.1.206	0.000816
E	62	V62F	Gtt	Ttt	1	1	B.1.223	0.002778
E	62	V62F	Gtt	Ttt	1	1	B.1.258	0.000067
E	62	V62F	Gtt	Ttt	1	1	B.1.265	0.001271
E	62	V62F	Gtt	Ttt	1	1	B.1.313	0.006579
E	62	V62F	Gtt	Ttt	1	1	B.1.351.2	0.000303
E	62	V62F	Gtt	Ttt	1	1	B.1.351.3	0.000876
E	62	V62F	Gtt	Ttt	1	1	B.1.351.5	0.0006
E	62	V62F	Gtt	Ttt	1	1	B.1.36.18	0.00042
E	62	V62F	Gtt	Ttt	1	1	B.1.391	0.001127
E	62	V62F	Gtt	Ttt	1	1	B.1.397	0.004854
E	62	V62F	Gtt	Ttt	1	1	B.1.448	0.002625
E	62	V62F	Gtt	Ttt	1	1	B.1.478	0.011765
E	62	V62F	Gtt	Ttt	1	1	B.1.497	0.000315
E	62	V62F	Gtt	Ttt	1	1	B.1.503	0.002488
E	62	V62F	Gtt	Ttt	1	1	B.1.523	0.002451
E	62	V62F	Gtt	Ttt	1	1	B.1.560	0.00463
E	62	V62F	Gtt	Ttt	1	1	B.1.576	0.000907
E	62	V62F	Gtt	Ttt	1	1	B.1.589	0.007576
E	62	V62F	Gtt	Ttt	1	1	B.1.6	0.017241
E	62	V62F	Gtt	Ttt	1	1	B.1.609	0.000479
E	62	V62F	Gtt	Ttt	1	1	B.1.621.1	0.000506
E	62	V62F	Gtt	Ttt	1	1	B.1.623	0.000536
E	62	V62F	Gtt	Ttt	1	1	B.1.633	0.041667
E	62	V62F	Gtt	Ttt	1	1	B.55	0.00295
E	62	V62F	Gtt	Ttt	1	1	C.2	0.016129
E	62	V62F	Gtt	Ttt	1	1	C.26	0.007353
E	62	V62F	Gtt	Ttt	1	1	C.37.1	0.002618
E	62	V62F	Gtt	Ttt	1	1	C.8	0.004464
E	62	V62F	Gtt	Ttt	1	1	D.3	0.005917
E	62	V62F	Gtt	Ttt	1	1	P.1.1	0.000318
E	62	V62F	Gtt	Ttt	1	1	P.1.7	0.000319
E	62	V62F	Gtt	Ttt	1	1	P.4	0.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.