CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
E | 71 | P71L | nonsyn | cCt | cTt | 42213 | 42206 | 0.999834 | 26455-26457 | |
E | 71 | P71L | nonsyn | cCT | cTA | 42213 | 5 | 0.000118447 | 26455-26457 | |
E | 71 | P71L | nonsyn | cCT | cTC | 42213 | 1 | 0.0000236894 | 26455-26457 | |
E | 71 | P71L | nonsyn | CCT | TTA | 42213 | 1 | 0.0000236894 | 26455-26457 |
Details of the mutation P71L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
E | 71 | P71L | cCt | cTt | 42206 | 42213 | All | 0.008072 |
E | 71 | P71L | cCT | cTA | 5 | 42213 | All | 0.000001 |
E | 71 | P71L | cCT | cTC | 1 | 42213 | All | 0 |
E | 71 | P71L | CCT | TTA | 1 | 42213 | All | 0 |
E | 71 | P71L | cCt | cTt | 32968 | 32968 | B.1.351 | 0.980024 |
E | 71 | P71L | cCt | cTt | 3247 | 3247 | B.1.351.2 | 0.982451 |
E | 71 | P71L | cCt | cTt | 1650 | 1650 | B.1.351.5 | 0.989209 |
E | 71 | P71L | cCt | cTt | 1130 | 1130 | B.1.351.3 | 0.990359 |
E | 71 | P71L | cCt | cTt | 698 | 698 | B.1 | 0.006393 |
E | 71 | P71L | cCt | cTt | 389 | 389 | B.1.1.7 | 0.000348 |
E | 71 | P71L | cCt | cTt | 203 | 203 | AY.4 | 0.000316 |
E | 71 | P71L | cCt | cTt | 104 | 104 | B.1.1 | 0.001887 |
E | 71 | P71L | cCt | cTt | 104 | 104 | B.1.2 | 0.000916 |
E | 71 | P71L | cCt | cTt | 97 | 97 | B.1.617.2 | 0.000365 |
E | 71 | P71L | cCt | cTt | 93 | 93 | AY.3 | 0.000925 |
E | 71 | P71L | cCt | cTt | 87 | 87 | P.1 | 0.001371 |
E | 71 | P71L | cCt | cTt | 49 | 49 | AY.25 | 0.000295 |
E | 71 | P71L | cCt | cTt | 47 | 47 | AY.44 | 0.000286 |
E | 71 | P71L | cCt | cTt | 41 | 41 | AY.43 | 0.000182 |
E | 71 | P71L | cCt | cTt | 36 | 36 | B.1.526 | 0.000846 |
E | 71 | P71L | cCt | cTt | 32 | 32 | AY.103 | 0.000199 |
E | 71 | P71L | cCt | cTt | 30 | 30 | B.1.177 | 0.000395 |
E | 71 | P71L | cCt | cTt | 29 | 29 | AY.29 | 0.000457 |
E | 71 | P71L | cCt | cTt | 28 | 28 | AY.26 | 0.000793 |
E | 71 | P71L | cCt | cTt | 28 | 28 | B.1.554 | 0.123348 |
E | 71 | P71L | cCt | cTt | 26 | 26 | B.1.637 | 0.0019 |
E | 71 | P71L | cCt | cTt | 25 | 25 | B.1.221 | 0.001776 |
E | 71 | P71L | cCt | cTt | 24 | 24 | B.1.429 | 0.000565 |
E | 71 | P71L | cCt | cTt | 23 | 23 | B.1.170 | 0.099138 |
E | 71 | P71L | cCt | cTt | 23 | 23 | B.1.36.17 | 0.011364 |
E | 71 | P71L | cCt | cTt | 22 | 22 | B.1.351.1 | 0.846154 |
E | 71 | P71L | cCt | cTt | 21 | 21 | B.1.636 | 0.14094 |
E | 71 | P71L | cCt | cTt | 20 | 20 | AY.33 | 0.001336 |
E | 71 | P71L | cCt | cTt | 19 | 19 | AD.1 | 0.078189 |
E | 71 | P71L | cCt | cTt | 19 | 19 | B.1.595 | 0.004958 |
E | 71 | P71L | cCt | cTt | 18 | 18 | AY.39 | 0.000445 |
E | 71 | P71L | cCt | cTt | 18 | 18 | AY.75 | 0.001008 |
E | 71 | P71L | cCt | cTt | 15 | 15 | B.1.1.176 | 0.006591 |
E | 71 | P71L | cCt | cTt | 15 | 15 | B.1.620 | 0.014191 |
E | 71 | P71L | cCt | cTt | 14 | 14 | AY.120 | 0.000521 |
E | 71 | P71L | cCt | cTt | 14 | 14 | B.1.1.519 | 0.000556 |
E | 71 | P71L | cCt | cTt | 14 | 14 | B.1.160 | 0.000437 |
E | 71 | P71L | cCt | cTt | 14 | 14 | C.37 | 0.001625 |
E | 71 | P71L | cCt | cTt | 14 | 14 | P.1.14 | 0.000669 |
E | 71 | P71L | cCt | cTt | 13 | 13 | B.1.1.3 | 0.113043 |
E | 71 | P71L | cCt | cTt | 13 | 13 | B.1.524 | 0.018284 |
E | 71 | P71L | cCt | cTt | 12 | 12 | B.1.243 | 0.000835 |
E | 71 | P71L | cCt | cTt | 11 | 12 | B.1.621 | 0.000974 |
E | 71 | P71L | cCT | cTA | 1 | 12 | B.1.621 | 0.000089 |
E | 71 | P71L | cCt | cTt | 11 | 11 | AY.41 | 0.003233 |
E | 71 | P71L | cCt | cTt | 11 | 11 | AY.5 | 0.000227 |
E | 71 | P71L | cCt | cTt | 11 | 11 | B.1.1.398 | 0.035484 |
E | 71 | P71L | cCt | cTt | 11 | 11 | B.1.523 | 0.026961 |
E | 71 | P71L | cCt | cTt | 10 | 10 | AY.4.2 | 0.000217 |
E | 71 | P71L | cCt | cTt | 10 | 10 | B | 0.001278 |
E | 71 | P71L | cCt | cTt | 10 | 10 | B.1.1.186 | 0.034364 |
E | 71 | P71L | cCt | cTt | 10 | 10 | B.1.1.37 | 0.001929 |
E | 71 | P71L | cCt | cTt | 10 | 10 | B.1.221.3 | 0.008333 |
E | 71 | P71L | cCt | cTt | 10 | 10 | B.1.596 | 0.000871 |
E | 71 | P71L | cCt | cTt | 9 | 9 | B.1.258 | 0.000599 |
E | 71 | P71L | cCt | cTt | 9 | 9 | B.1.258.17 | 0.000936 |
E | 71 | P71L | cCt | cTt | 9 | 9 | B.1.311 | 0.002471 |
E | 71 | P71L | cCt | cTt | 8 | 8 | AY.20 | 0.000311 |
E | 71 | P71L | cCt | cTt | 8 | 8 | AY.98.1 | 0.000387 |
E | 71 | P71L | cCt | cTt | 8 | 8 | B.1.1.39 | 0.004077 |
E | 71 | P71L | cCt | cTt | 8 | 8 | B.1.177.21 | 0.000612 |
E | 71 | P71L | cCt | cTt | 8 | 8 | B.1.561 | 0.003176 |
E | 71 | P71L | cCt | cTt | 7 | 8 | P.1.1 | 0.002224 |
E | 71 | P71L | cCT | cTA | 1 | 8 | P.1.1 | 0.000318 |
E | 71 | P71L | cCt | cTt | 8 | 8 | P.2 | 0.001493 |
E | 71 | P71L | cCt | cTt | 7 | 7 | AY.93 | 0.001912 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.1.28 | 0.002179 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.1.311 | 0.002507 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.177.15 | 0.004416 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.36.36 | 0.004214 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.396 | 0.00494 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.602 | 0.045752 |
E | 71 | P71L | cCt | cTt | 7 | 7 | B.1.609 | 0.003356 |
E | 71 | P71L | cCt | cTt | 3 | 6 | 0.166667 | |
E | 71 | P71L | CCT | TTA | 1 | 6 | 0.055556 | |
E | 71 | P71L | cCT | cTC | 1 | 6 | 0.055556 | |
E | 71 | P71L | cCT | cTA | 1 | 6 | 0.055556 | |
E | 71 | P71L | cCt | cTt | 6 | 6 | AY.100 | 0.000276 |
E | 71 | P71L | cCt | cTt | 6 | 6 | AY.119 | 0.000212 |
E | 71 | P71L | cCt | cTt | 6 | 6 | AY.42 | 0.000241 |
E | 71 | P71L | cCt | cTt | 6 | 6 | AY.47 | 0.000187 |
E | 71 | P71L | cCt | cTt | 5 | 6 | AY.61 | 0.000524 |
E | 71 | P71L | cCT | cTA | 1 | 6 | AY.61 | 0.000105 |
E | 71 | P71L | cCt | cTt | 6 | 6 | B.1.177.82 | 0.002864 |
E | 71 | P71L | cCt | cTt | 6 | 6 | B.1.234 | 0.000792 |
E | 71 | P71L | cCt | cTt | 6 | 6 | C.30 | 0.010363 |
E | 71 | P71L | cCt | cTt | 5 | 5 | A | 0.001935 |
E | 71 | P71L | cCt | cTt | 5 | 5 | A.1 | 0.001409 |
E | 71 | P71L | cCt | cTt | 5 | 5 | AY.102 | 0.000133 |
E | 71 | P71L | cCt | cTt | 5 | 5 | AY.45 | 0.000608 |
E | 71 | P71L | cCt | cTt | 5 | 5 | AY.46.6 | 0.000361 |
E | 71 | P71L | cCt | cTt | 5 | 5 | AY.98 | 0.000395 |
E | 71 | P71L | cCt | cTt | 5 | 5 | B.1.1.1 | 0.001633 |
E | 71 | P71L | cCt | cTt | 5 | 5 | B.1.1.284 | 0.000537 |
E | 71 | P71L | cCt | cTt | 5 | 5 | B.1.1.416 | 0.004525 |
E | 71 | P71L | cCt | cTt | 5 | 5 | B.1.35 | 0.042373 |
E | 71 | P71L | cCt | cTt | 5 | 5 | B.1.36.29 | 0.002587 |
E | 71 | P71L | cCt | cTt | 5 | 5 | B.1.367 | 0.003962 |
E | 71 | P71L | cCt | cTt | 5 | 5 | R.1 | 0.00045 |
E | 71 | P71L | cCt | cTt | 4 | 4 | A.2.5 | 0.001996 |
E | 71 | P71L | cCt | cTt | 4 | 4 | AY.14 | 0.000352 |
E | 71 | P71L | cCt | cTt | 4 | 4 | AY.23 | 0.000279 |
E | 71 | P71L | cCt | cTt | 4 | 4 | AY.24 | 0.001724 |
E | 71 | P71L | cCt | cTt | 4 | 4 | AY.36 | 0.000593 |
E | 71 | P71L | cCt | cTt | 4 | 4 | AY.56 | 0.006421 |
E | 71 | P71L | cCt | cTt | 4 | 4 | AY.9 | 0.00027 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.1.291 | 0.00297 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.1.306 | 0.001754 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.177.57 | 0.001124 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.177.73 | 0.002265 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.404 | 0.005208 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.438.1 | 0.000429 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.470 | 0.005618 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.1.623 | 0.002146 |
E | 71 | P71L | cCt | cTt | 4 | 4 | B.6 | 0.00364 |
E | 71 | P71L | cCt | cTt | 4 | 4 | N.5 | 0.007067 |
E | 71 | P71L | cCt | cTt | 4 | 4 | P.1.12 | 0.001936 |
E | 71 | P71L | cCt | cTt | 4 | 4 | P.1.15 | 0.000929 |
E | 71 | P71L | cCt | cTt | 4 | 4 | Q.3 | 0.00058 |
E | 71 | P71L | cCt | cTt | 3 | 3 | AD.2 | 0.000657 |
E | 71 | P71L | cCt | cTt | 3 | 3 | AY.116.1 | 0.000934 |
E | 71 | P71L | cCt | cTt | 3 | 3 | AY.34 | 0.000291 |
E | 71 | P71L | cCt | cTt | 3 | 3 | AY.59 | 0.001589 |
E | 71 | P71L | cCt | cTt | 3 | 3 | AY.9.2 | 0.00011 |
E | 71 | P71L | cCt | cTt | 3 | 3 | AY.99.2 | 0.000276 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.1.409 | 0.008499 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.1.420 | 0.003018 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.1.432 | 0.003797 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.1.507 | 0.026087 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.177.8 | 0.002257 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.240 | 0.000647 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.36 | 0.000438 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.427 | 0.000151 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.549 | 0.021583 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.582 | 0.001472 |
E | 71 | P71L | cCt | cTt | 3 | 3 | B.1.619 | 0.002613 |
E | 71 | P71L | cCt | cTt | 3 | 3 | C.36 | 0.002732 |
E | 71 | P71L | cCt | cTt | 3 | 3 | D.2 | 0.000225 |
E | 71 | P71L | cCt | cTt | 3 | 3 | P.1.7 | 0.000958 |
E | 71 | P71L | cCt | cTt | 3 | 3 | Q.8 | 0.000495 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AS.2 | 0.03125 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AU.3 | 0.004219 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.113 | 0.000285 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.117 | 0.000169 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.121 | 0.000271 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.16 | 0.000759 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.28 | 0.003781 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.30 | 0.000791 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.46 | 0.000208 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.55 | 0.001835 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.68 | 0.000547 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.7.1 | 0.000225 |
E | 71 | P71L | cCt | cTt | 2 | 2 | AY.92 | 0.000575 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.135 | 0.00939 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.210 | 0.011429 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.317 | 0.000823 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.318 | 0.000604 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.372 | 0.001377 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.397 | 0.004505 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.434 | 0.000697 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.1.487 | 0.011173 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.160.15 | 0.009901 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.177.31 | 0.022989 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.177.60 | 0.000437 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.177.65 | 0.001331 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.177.7 | 0.00033 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.177.81 | 0.000379 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.177.86 | 0.000367 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.214.2 | 0.001199 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.214.3 | 0.014286 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.36.8 | 0.002 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.375 | 0.001639 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.400 | 0.000858 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.469 | 0.00722 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.499 | 0.002101 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.525 | 0.000226 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.1.619.1 | 0.001283 |
E | 71 | P71L | cCt | cTt | 1 | 2 | B.1.627 | 0.00202 |
E | 71 | P71L | cCT | cTA | 1 | 2 | B.1.627 | 0.00202 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.3 | 0.001661 |
E | 71 | P71L | cCt | cTt | 2 | 2 | B.40 | 0.000729 |
E | 71 | P71L | cCt | cTt | 2 | 2 | C.16 | 0.002121 |
E | 71 | P71L | cCt | cTt | 2 | 2 | C.36.3 | 0.001134 |
E | 71 | P71L | cCt | cTt | 2 | 2 | C.8 | 0.008929 |
E | 71 | P71L | cCt | cTt | 2 | 2 | P.1.16 | 0.000748 |
E | 71 | P71L | cCt | cTt | 2 | 2 | P.1.8 | 0.009569 |
E | 71 | P71L | cCt | cTt | 1 | 1 | A.2 | 0.000662 |
E | 71 | P71L | cCt | cTt | 1 | 1 | A.23.1 | 0.000704 |
E | 71 | P71L | cCt | cTt | 1 | 1 | A.27 | 0.001656 |
E | 71 | P71L | cCt | cTt | 1 | 1 | A.5 | 0.001923 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AA.1 | 0.007246 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AU.2 | 0.002421 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.1 | 0.000396 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.106 | 0.000335 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.107 | 0.000466 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.110 | 0.000113 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.111 | 0.000183 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.118 | 0.000063 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.29.1 | 0.000221 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.3.1 | 0.000085 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.34.1 | 0.00051 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.38 | 0.000499 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.39.1 | 0.00004 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.4.2.1 | 0.000149 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.4.4 | 0.000409 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.46.2 | 0.000635 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.46.3 | 0.000934 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.46.5 | 0.000198 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.5.4 | 0.000277 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.52 | 0.000814 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.54 | 0.000095 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.62 | 0.000436 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.63 | 0.000387 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.73 | 0.000665 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.74 | 0.000116 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AY.96 | 0.002075 |
E | 71 | P71L | cCt | cTt | 1 | 1 | AZ.1 | 0.000867 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.134 | 0.011364 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.141 | 0.002012 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.148 | 0.008772 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.157 | 0.000913 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.189 | 0.001513 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.192 | 0.002309 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.198 | 0.001468 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.207 | 0.001182 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.216 | 0.00089 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.253 | 0.002506 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.257 | 0.009709 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.308 | 0.011765 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.315 | 0.008475 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.354 | 0.004386 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.369 | 0.000446 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.370 | 0.012658 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.375 | 0.011905 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.389 | 0.006061 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.462 | 0.008621 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.464 | 0.001473 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.485 | 0.016667 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.1.77 | 0.041667 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.110 | 0.004525 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.110.3 | 0.000718 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.126 | 0.001276 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.128 | 0.000635 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.147 | 0.000756 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.157 | 0.002985 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.160.14 | 0.002119 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.160.32 | 0.004292 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.30 | 0.002513 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.4 | 0.000211 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.40 | 0.005155 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.45 | 0.000381 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.6 | 0.000977 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.70 | 0.005917 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.72 | 0.00339 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.177.87 | 0.000728 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.205 | 0.02381 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.218 | 0.005155 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.232 | 0.000537 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.236 | 0.002053 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.237 | 0.004975 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.258.11 | 0.000396 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.258.3 | 0.001675 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.258.9 | 0.005 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.260 | 0.003344 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.289 | 0.00266 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.320 | 0.001245 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.335 | 0.010309 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.36.10 | 0.004785 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.36.18 | 0.00042 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.36.19 | 0.009259 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.36.2 | 0.010753 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.36.27 | 0.000763 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.36.39 | 0.002217 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.361 | 0.001289 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.362 | 0.001541 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.369 | 0.000285 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.381 | 0.007812 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.390 | 0.010638 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.391 | 0.001127 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.401 | 0.008197 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.421 | 0.007463 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.426 | 0.001009 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.459 | 0.004082 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.466.2 | 0.000391 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.480 | 0.002488 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.538 | 0.008065 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.568 | 0.001111 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.575 | 0.000303 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.580 | 0.004065 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.587 | 0.001898 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.615 | 0.04 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.628 | 0.000352 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.1.78 | 0.008547 |
E | 71 | P71L | cCt | cTt | 1 | 1 | B.39 | 0.002331 |
E | 71 | P71L | cCt | cTt | 1 | 1 | C.1 | 0.002392 |
E | 71 | P71L | cCt | cTt | 1 | 1 | P.1.2 | 0.001156 |
E | 71 | P71L | cCt | cTt | 1 | 1 | P.3 | 0.001595 |
E | 71 | P71L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
E | 71 | P71L | cCt | cTt | 1 | 1 | Q.4 | 0.000455 |
E | 71 | P71L | cCt | cTt | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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