CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
E | 65 | L65L | syn | ctG | ctT | 3225 | 2592 | 0.803721 | 26437-26439 | |
E | 65 | L65L | syn | Ctg | Ttg | 3225 | 394 | 0.122171 | 26437-26439 | |
E | 65 | L65L | syn | ctG | ctA | 3225 | 206 | 0.063876 | 26437-26439 | |
E | 65 | L65L | syn | ctG | ctC | 3225 | 32 | 0.00992248 | 26437-26439 | |
E | 65 | L65L | syn | CtG | TtA | 3225 | 1 | 0.000310078 | 26437-26439 |
Details of the mutation L65L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
E | 65 | L65L | ctG | ctT | 2592 | 3225 | All | 0.000496 |
E | 65 | L65L | Ctg | Ttg | 394 | 3225 | All | 0.000075 |
E | 65 | L65L | ctG | ctA | 206 | 3225 | All | 0.000039 |
E | 65 | L65L | ctG | ctC | 32 | 3225 | All | 0.000006 |
E | 65 | L65L | CtG | TtA | 1 | 3225 | All | 0 |
E | 65 | L65L | ctG | ctT | 344 | 404 | AY.4 | 0.000535 |
E | 65 | L65L | Ctg | Ttg | 53 | 404 | AY.4 | 0.000082 |
E | 65 | L65L | ctG | ctA | 5 | 404 | AY.4 | 0.000008 |
E | 65 | L65L | ctG | ctC | 2 | 404 | AY.4 | 0.000003 |
E | 65 | L65L | ctG | ctA | 136 | 392 | B.1.1.7 | 0.000122 |
E | 65 | L65L | ctG | ctT | 135 | 392 | B.1.1.7 | 0.000121 |
E | 65 | L65L | Ctg | Ttg | 120 | 392 | B.1.1.7 | 0.000107 |
E | 65 | L65L | ctG | ctC | 1 | 392 | B.1.1.7 | 0.000001 |
E | 65 | L65L | ctG | ctT | 312 | 313 | AY.3 | 0.003103 |
E | 65 | L65L | ctG | ctC | 1 | 313 | AY.3 | 0.00001 |
E | 65 | L65L | ctG | ctT | 296 | 310 | B.1.617.2 | 0.001115 |
E | 65 | L65L | Ctg | Ttg | 8 | 310 | B.1.617.2 | 0.00003 |
E | 65 | L65L | ctG | ctA | 3 | 310 | B.1.617.2 | 0.000011 |
E | 65 | L65L | ctG | ctC | 3 | 310 | B.1.617.2 | 0.000011 |
E | 65 | L65L | ctG | ctT | 285 | 285 | AY.94 | 0.126162 |
E | 65 | L65L | ctG | ctT | 189 | 201 | AY.44 | 0.00115 |
E | 65 | L65L | Ctg | Ttg | 6 | 201 | AY.44 | 0.000037 |
E | 65 | L65L | ctG | ctA | 3 | 201 | AY.44 | 0.000018 |
E | 65 | L65L | ctG | ctC | 3 | 201 | AY.44 | 0.000018 |
E | 65 | L65L | ctG | ctT | 128 | 133 | AY.43 | 0.000567 |
E | 65 | L65L | Ctg | Ttg | 4 | 133 | AY.43 | 0.000018 |
E | 65 | L65L | ctG | ctA | 1 | 133 | AY.43 | 0.000004 |
E | 65 | L65L | ctG | ctT | 76 | 92 | AY.103 | 0.000472 |
E | 65 | L65L | Ctg | Ttg | 15 | 92 | AY.103 | 0.000093 |
E | 65 | L65L | ctG | ctA | 1 | 92 | AY.103 | 0.000006 |
E | 65 | L65L | ctG | ctT | 38 | 81 | B.1 | 0.000348 |
E | 65 | L65L | Ctg | Ttg | 23 | 81 | B.1 | 0.000211 |
E | 65 | L65L | ctG | ctA | 20 | 81 | B.1 | 0.000183 |
E | 65 | L65L | ctG | ctT | 40 | 54 | B.1.177 | 0.000527 |
E | 65 | L65L | Ctg | Ttg | 14 | 54 | B.1.177 | 0.000184 |
E | 65 | L65L | ctG | ctT | 38 | 42 | AY.39 | 0.000939 |
E | 65 | L65L | Ctg | Ttg | 3 | 42 | AY.39 | 0.000074 |
E | 65 | L65L | ctG | ctC | 1 | 42 | AY.39 | 0.000025 |
E | 65 | L65L | ctG | ctT | 27 | 39 | AY.25 | 0.000162 |
E | 65 | L65L | ctG | ctA | 9 | 39 | AY.25 | 0.000054 |
E | 65 | L65L | ctG | ctC | 2 | 39 | AY.25 | 0.000012 |
E | 65 | L65L | Ctg | Ttg | 1 | 39 | AY.25 | 0.000006 |
E | 65 | L65L | ctG | ctT | 39 | 39 | C.36.3 | 0.022121 |
E | 65 | L65L | ctG | ctT | 36 | 36 | AY.101 | 0.017656 |
E | 65 | L65L | ctG | ctT | 31 | 36 | AY.54 | 0.002956 |
E | 65 | L65L | Ctg | Ttg | 5 | 36 | AY.54 | 0.000477 |
E | 65 | L65L | ctG | ctT | 18 | 31 | B.1.2 | 0.000158 |
E | 65 | L65L | Ctg | Ttg | 9 | 31 | B.1.2 | 0.000079 |
E | 65 | L65L | ctG | ctC | 3 | 31 | B.1.2 | 0.000026 |
E | 65 | L65L | ctG | ctA | 1 | 31 | B.1.2 | 0.000009 |
E | 65 | L65L | ctG | ctT | 30 | 31 | B.1.351 | 0.000892 |
E | 65 | L65L | Ctg | Ttg | 1 | 31 | B.1.351 | 0.00003 |
E | 65 | L65L | ctG | ctT | 14 | 29 | AY.120 | 0.000521 |
E | 65 | L65L | Ctg | Ttg | 13 | 29 | AY.120 | 0.000483 |
E | 65 | L65L | ctG | ctA | 2 | 29 | AY.120 | 0.000074 |
E | 65 | L65L | ctG | ctT | 24 | 29 | B.1.526 | 0.000564 |
E | 65 | L65L | Ctg | Ttg | 3 | 29 | B.1.526 | 0.000071 |
E | 65 | L65L | ctG | ctA | 2 | 29 | B.1.526 | 0.000047 |
E | 65 | L65L | ctG | ctT | 21 | 25 | AY.102 | 0.000557 |
E | 65 | L65L | Ctg | Ttg | 3 | 25 | AY.102 | 0.00008 |
E | 65 | L65L | ctG | ctA | 1 | 25 | AY.102 | 0.000027 |
E | 65 | L65L | ctG | ctT | 23 | 23 | B.1.240 | 0.004958 |
E | 65 | L65L | ctG | ctT | 15 | 21 | B.1.1.519 | 0.000596 |
E | 65 | L65L | Ctg | Ttg | 5 | 21 | B.1.1.519 | 0.000199 |
E | 65 | L65L | ctG | ctA | 1 | 21 | B.1.1.519 | 0.00004 |
E | 65 | L65L | ctG | ctT | 12 | 19 | P.1 | 0.000189 |
E | 65 | L65L | Ctg | Ttg | 4 | 19 | P.1 | 0.000063 |
E | 65 | L65L | ctG | ctA | 2 | 19 | P.1 | 0.000032 |
E | 65 | L65L | ctG | ctC | 1 | 19 | P.1 | 0.000016 |
E | 65 | L65L | ctG | ctT | 15 | 17 | AY.118 | 0.00094 |
E | 65 | L65L | ctG | ctA | 2 | 17 | AY.118 | 0.000125 |
E | 65 | L65L | ctG | ctT | 15 | 17 | AY.33 | 0.001002 |
E | 65 | L65L | Ctg | Ttg | 2 | 17 | AY.33 | 0.000134 |
E | 65 | L65L | ctG | ctT | 17 | 17 | AY.4.2 | 0.000369 |
E | 65 | L65L | ctG | ctT | 11 | 17 | AY.5 | 0.000227 |
E | 65 | L65L | Ctg | Ttg | 6 | 17 | AY.5 | 0.000124 |
E | 65 | L65L | ctG | ctT | 13 | 16 | AY.26 | 0.000368 |
E | 65 | L65L | Ctg | Ttg | 3 | 16 | AY.26 | 0.000085 |
E | 65 | L65L | ctG | ctT | 13 | 16 | AY.42 | 0.000523 |
E | 65 | L65L | ctG | ctC | 3 | 16 | AY.42 | 0.000121 |
E | 65 | L65L | ctG | ctT | 14 | 16 | B.1.1 | 0.000254 |
E | 65 | L65L | Ctg | Ttg | 2 | 16 | B.1.1 | 0.000036 |
E | 65 | L65L | ctG | ctT | 11 | 14 | AY.29 | 0.000174 |
E | 65 | L65L | Ctg | Ttg | 3 | 14 | AY.29 | 0.000047 |
E | 65 | L65L | ctG | ctT | 13 | 13 | B.1.1.369 | 0.005801 |
E | 65 | L65L | ctG | ctT | 11 | 11 | B.1.1.37 | 0.002122 |
E | 65 | L65L | Ctg | Ttg | 10 | 10 | AY.69 | 0.001867 |
E | 65 | L65L | ctG | ctT | 10 | 10 | B.1.1.28 | 0.003112 |
E | 65 | L65L | ctG | ctT | 8 | 10 | B.1.596 | 0.000697 |
E | 65 | L65L | Ctg | Ttg | 1 | 10 | B.1.596 | 0.000087 |
E | 65 | L65L | ctG | ctA | 1 | 10 | B.1.596 | 0.000087 |
E | 65 | L65L | ctG | ctT | 9 | 9 | AY.119 | 0.000318 |
E | 65 | L65L | Ctg | Ttg | 9 | 9 | B.1.1.232 | 0.016334 |
E | 65 | L65L | ctG | ctT | 8 | 8 | B.1.177.7 | 0.001319 |
E | 65 | L65L | ctG | ctT | 6 | 8 | P.1.7 | 0.001916 |
E | 65 | L65L | Ctg | Ttg | 2 | 8 | P.1.7 | 0.000639 |
E | 65 | L65L | ctG | ctT | 4 | 7 | 0.222222 | |
E | 65 | L65L | ctG | ctA | 1 | 7 | 0.055556 | |
E | 65 | L65L | Ctg | Ttg | 1 | 7 | 0.055556 | |
E | 65 | L65L | CtG | TtA | 1 | 7 | 0.055556 | |
E | 65 | L65L | ctG | ctT | 6 | 7 | AY.46 | 0.000624 |
E | 65 | L65L | Ctg | Ttg | 1 | 7 | AY.46 | 0.000104 |
E | 65 | L65L | ctG | ctT | 7 | 7 | AY.46.6 | 0.000505 |
E | 65 | L65L | ctG | ctT | 7 | 7 | B.1.617.1 | 0.000903 |
E | 65 | L65L | ctG | ctT | 4 | 7 | C.37 | 0.000464 |
E | 65 | L65L | Ctg | Ttg | 3 | 7 | C.37 | 0.000348 |
E | 65 | L65L | ctG | ctT | 6 | 7 | P.1.14 | 0.000287 |
E | 65 | L65L | Ctg | Ttg | 1 | 7 | P.1.14 | 0.000048 |
E | 65 | L65L | ctG | ctT | 6 | 6 | AY.5.4 | 0.00166 |
E | 65 | L65L | ctG | ctT | 6 | 6 | AY.78 | 0.009245 |
E | 65 | L65L | ctG | ctT | 6 | 6 | AY.98.1 | 0.000291 |
E | 65 | L65L | Ctg | Ttg | 5 | 5 | AY.111 | 0.000916 |
E | 65 | L65L | ctG | ctT | 4 | 5 | AY.121 | 0.000541 |
E | 65 | L65L | Ctg | Ttg | 1 | 5 | AY.121 | 0.000135 |
E | 65 | L65L | ctG | ctT | 3 | 5 | AY.20 | 0.000117 |
E | 65 | L65L | Ctg | Ttg | 2 | 5 | AY.20 | 0.000078 |
E | 65 | L65L | ctG | ctT | 4 | 5 | AY.23 | 0.000279 |
E | 65 | L65L | ctG | ctA | 1 | 5 | AY.23 | 0.00007 |
E | 65 | L65L | ctG | ctT | 4 | 5 | B.1.1.70 | 0.001364 |
E | 65 | L65L | Ctg | Ttg | 1 | 5 | B.1.1.70 | 0.000341 |
E | 65 | L65L | ctG | ctT | 5 | 5 | B.1.480 | 0.012438 |
E | 65 | L65L | Ctg | Ttg | 5 | 5 | B.1.577 | 0.003436 |
E | 65 | L65L | Ctg | Ttg | 5 | 5 | P.1.15 | 0.001162 |
E | 65 | L65L | ctG | ctT | 3 | 4 | AY.3.1 | 0.000256 |
E | 65 | L65L | ctG | ctC | 1 | 4 | AY.3.1 | 0.000085 |
E | 65 | L65L | ctG | ctT | 4 | 4 | AY.45 | 0.000487 |
E | 65 | L65L | ctG | ctT | 3 | 4 | AY.47 | 0.000093 |
E | 65 | L65L | Ctg | Ttg | 1 | 4 | AY.47 | 0.000031 |
E | 65 | L65L | ctG | ctT | 4 | 4 | AY.6 | 0.000165 |
E | 65 | L65L | ctG | ctT | 4 | 4 | AY.61 | 0.000419 |
E | 65 | L65L | ctG | ctT | 4 | 4 | AY.75 | 0.000224 |
E | 65 | L65L | ctG | ctT | 4 | 4 | AY.9.2 | 0.000147 |
E | 65 | L65L | ctG | ctC | 4 | 4 | B.1.575 | 0.001214 |
E | 65 | L65L | Ctg | Ttg | 2 | 4 | B.1.621 | 0.000177 |
E | 65 | L65L | ctG | ctC | 1 | 4 | B.1.621 | 0.000089 |
E | 65 | L65L | ctG | ctT | 1 | 4 | B.1.621 | 0.000089 |
E | 65 | L65L | Ctg | Ttg | 3 | 4 | Q.3 | 0.000435 |
E | 65 | L65L | ctG | ctT | 1 | 4 | Q.3 | 0.000145 |
E | 65 | L65L | ctG | ctT | 3 | 4 | R.1 | 0.00027 |
E | 65 | L65L | ctG | ctA | 1 | 4 | R.1 | 0.00009 |
E | 65 | L65L | Ctg | Ttg | 3 | 3 | A.27 | 0.004967 |
E | 65 | L65L | ctG | ctT | 3 | 3 | AM.4 | 0.010714 |
E | 65 | L65L | ctG | ctT | 3 | 3 | AY.106 | 0.001005 |
E | 65 | L65L | Ctg | Ttg | 2 | 3 | AY.109 | 0.001479 |
E | 65 | L65L | ctG | ctT | 1 | 3 | AY.109 | 0.00074 |
E | 65 | L65L | ctG | ctT | 3 | 3 | AY.16.1 | 0.00141 |
E | 65 | L65L | ctG | ctT | 3 | 3 | AY.34 | 0.000291 |
E | 65 | L65L | ctG | ctT | 2 | 3 | AY.34.1 | 0.00102 |
E | 65 | L65L | ctG | ctA | 1 | 3 | AY.34.1 | 0.00051 |
E | 65 | L65L | ctG | ctT | 2 | 3 | AY.39.1 | 0.000079 |
E | 65 | L65L | Ctg | Ttg | 1 | 3 | AY.39.1 | 0.00004 |
E | 65 | L65L | ctG | ctT | 3 | 3 | AY.9 | 0.000203 |
E | 65 | L65L | ctG | ctT | 3 | 3 | B.1.1.306 | 0.001315 |
E | 65 | L65L | ctG | ctC | 3 | 3 | B.1.1.434 | 0.001046 |
E | 65 | L65L | ctG | ctT | 3 | 3 | B.1.110.3 | 0.002155 |
E | 65 | L65L | Ctg | Ttg | 3 | 3 | B.1.258 | 0.0002 |
E | 65 | L65L | Ctg | Ttg | 2 | 3 | B.1.609 | 0.000959 |
E | 65 | L65L | ctG | ctT | 1 | 3 | B.1.609 | 0.000479 |
E | 65 | L65L | ctG | ctT | 3 | 3 | B.1.637 | 0.000219 |
E | 65 | L65L | ctG | ctT | 3 | 3 | C.39 | 0.056604 |
E | 65 | L65L | Ctg | Ttg | 1 | 3 | D.2 | 0.000075 |
E | 65 | L65L | ctG | ctT | 1 | 3 | D.2 | 0.000075 |
E | 65 | L65L | ctG | ctA | 1 | 3 | D.2 | 0.000075 |
E | 65 | L65L | ctG | ctT | 3 | 3 | Q.2 | 0.00184 |
E | 65 | L65L | ctG | ctT | 1 | 2 | A.2 | 0.000662 |
E | 65 | L65L | ctG | ctA | 1 | 2 | A.2 | 0.000662 |
E | 65 | L65L | ctG | ctT | 1 | 2 | AY.100 | 0.000046 |
E | 65 | L65L | Ctg | Ttg | 1 | 2 | AY.100 | 0.000046 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.105 | 0.001286 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.116.1 | 0.000623 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.12 | 0.000632 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.4.4 | 0.000818 |
E | 65 | L65L | ctG | ctT | 1 | 2 | AY.46.4 | 0.000165 |
E | 65 | L65L | ctG | ctC | 1 | 2 | AY.46.4 | 0.000165 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.67 | 0.000929 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.68 | 0.000547 |
E | 65 | L65L | Ctg | Ttg | 2 | 2 | AY.7 | 0.000392 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.84 | 0.000875 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.92 | 0.000575 |
E | 65 | L65L | ctG | ctT | 2 | 2 | AY.99.2 | 0.000184 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B | 0.000256 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B.1.1.214 | 0.000111 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B.1.1.229 | 0.011494 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B.1.1.403 | 0.051282 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B.1.177.79 | 0.004684 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B.1.351.2 | 0.000605 |
E | 65 | L65L | ctG | ctT | 2 | 2 | B.1.456 | 0.006536 |
E | 65 | L65L | ctG | ctT | 1 | 2 | B.1.595 | 0.000261 |
E | 65 | L65L | ctG | ctA | 1 | 2 | B.1.595 | 0.000261 |
E | 65 | L65L | ctG | ctA | 2 | 2 | B.1.618 | 0.008065 |
E | 65 | L65L | Ctg | Ttg | 1 | 2 | P.2 | 0.000187 |
E | 65 | L65L | ctG | ctT | 1 | 2 | P.2 | 0.000187 |
E | 65 | L65L | ctG | ctT | 1 | 1 | A | 0.000387 |
E | 65 | L65L | ctG | ctA | 1 | 1 | A.23.1 | 0.000704 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AD.2 | 0.000219 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | AY.107 | 0.000466 |
E | 65 | L65L | ctG | ctA | 1 | 1 | AY.113 | 0.000142 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.116 | 0.000287 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.120.1 | 0.000321 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.13 | 0.000161 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | AY.14 | 0.000088 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.17 | 0.008197 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.32 | 0.000532 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.35 | 0.000233 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.36 | 0.000148 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.37 | 0.000316 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | AY.4.2.1 | 0.000149 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.4.5 | 0.000107 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.41 | 0.000294 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.46.2 | 0.000635 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.46.3 | 0.000934 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.52 | 0.000814 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | AY.55 | 0.000917 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.56 | 0.001605 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.57 | 0.000656 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.58 | 0.000907 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | AY.62 | 0.000436 |
E | 65 | L65L | ctG | ctA | 1 | 1 | AY.63 | 0.000387 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.7.1 | 0.000113 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.73 | 0.000665 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.82 | 0.001357 |
E | 65 | L65L | ctG | ctA | 1 | 1 | AY.85 | 0.000427 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.86 | 0.00083 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.87 | 0.000833 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.88 | 0.000884 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.90 | 0.000684 |
E | 65 | L65L | ctG | ctT | 1 | 1 | AY.98 | 0.000079 |
E | 65 | L65L | ctG | ctA | 1 | 1 | B.1.1.1 | 0.000327 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.101 | 0.01 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
E | 65 | L65L | ctG | ctA | 1 | 1 | B.1.1.222 | 0.000204 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.280 | 0.003086 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.284 | 0.000107 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.33 | 0.000421 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.348 | 0.000796 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.1.359 | 0.027778 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.367 | 0.055556 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.1.4 | 0.002976 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.1.442 | 0.018519 |
E | 65 | L65L | ctG | ctC | 1 | 1 | B.1.1.526 | 0.003546 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.1.99 | 0.02381 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.103 | 0.019231 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.137 | 0.5 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.147 | 0.000756 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.177.32 | 0.00135 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.177.46 | 0.000918 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.177.54 | 0.000606 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.177.85 | 0.005435 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.189 | 0.004292 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.214.2 | 0.0006 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.22 | 0.001318 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.221 | 0.000071 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.232 | 0.000537 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.243 | 0.00007 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.265 | 0.001271 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.301 | 0.005917 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.311 | 0.000275 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.320 | 0.001245 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.325 | 0.006897 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.348 | 0.018182 |
E | 65 | L65L | ctG | ctC | 1 | 1 | B.1.36.29 | 0.000517 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.362 | 0.001541 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.369 | 0.000285 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.398 | 0.002976 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.400 | 0.000429 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.413 | 0.004255 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.428 | 0.00102 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.470 | 0.001404 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.492 | 0.007042 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.517 | 0.000427 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.520 | 0.021739 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.521 | 0.004975 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.525 | 0.000113 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.598 | 0.016949 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | B.1.612 | 0.002653 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.1.623 | 0.000536 |
E | 65 | L65L | ctG | ctT | 1 | 1 | B.55 | 0.00295 |
E | 65 | L65L | ctG | ctT | 1 | 1 | C.1.2 | 0.004255 |
E | 65 | L65L | Ctg | Ttg | 1 | 1 | C.2.1 | 0.006667 |
E | 65 | L65L | ctG | ctT | 1 | 1 | C.26 | 0.007353 |
E | 65 | L65L | ctG | ctT | 1 | 1 | C.37.1 | 0.002618 |
E | 65 | L65L | ctG | ctT | 1 | 1 | N.5 | 0.001767 |
E | 65 | L65L | ctG | ctA | 1 | 1 | P.1.10 | 0.000269 |
E | 65 | L65L | ctG | ctT | 1 | 1 | P.1.13 | 0.000898 |
E | 65 | L65L | ctG | ctT | 1 | 1 | P.1.17 | 0.000162 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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