CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 9

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E9T9InonsynaCaaTa53625362126269-26271
E9T9TsynacAacG5132430.47368426269-26271
E9T9TsynacAacC5131490.29044826269-26271
E9T9TsynacAacT5131210.23586726269-26271
E9T9AnonsynAcaGca71700.98591526269-26271
E9T9AnonsynAcAGcG7110.014084526269-26271
E9T9SnonsynAcaTca2525126269-26271
E9T9deldelACA---1111126269-26271
E9T9KnonsynaCaaAa66126269-26271
E9T9RnonsynaCaaGa55126269-26271
E9T9del2delACa--a430.7526269-26271
E9T9del2delACA--N410.2526269-26271
E9T9VnonsynACaGTa210.526269-26271
E9T9VnonsynACAGTG210.526269-26271
E9T9PnonsynAcaCca210.526269-26271
E9T9PnonsynAcACcG210.526269-26271
E9T9del1delacAac-11126269-26271
E9T9MnonsynaCAaTG11126269-26271

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E9T9IaCaaTa53625362All0.001026
E9T9IaCaaTa21512151B.1.1.70.001926
E9T9TacAacG243513All0.000046
E9T9TacAacC149513All0.000028
E9T9TacAacT121513All0.000023
E9T9IaCaaTa437437AY.30.004347
E9T9IaCaaTa358358AY.40.000557
E9T9TacAacC147239B.1.1.70.000132
E9T9TacAacG48239B.1.1.70.000043
E9T9TacAacT44239B.1.1.70.000039
E9T9IaCaaTa232232AY.9.2.10.458498
E9T9IaCaaTa219219B.1.5050.960526
E9T9TacAacG135140AY.40.00021
E9T9TacAacT5140AY.40.000008
E9T9IaCaaTa131131B.1.617.20.000493
E9T9IaCaaTa103103B.1.20.000907
E9T9IaCaaTa102102B.1.10.00185
E9T9IaCaaTa8181B.10.000742
E9T9IaCaaTa7373P.10.00115
E9T9AAcaGca7071All0.000013
E9T9AAcAGcG171All0
E9T9IaCaaTa6868AY.440.000414
E9T9IaCaaTa6767AY.1030.000416
E9T9IaCaaTa6363AY.250.000379
E9T9IaCaaTa5757B.1.4270.002878
E9T9IaCaaTa5050B.1.6280.017618
E9T9IaCaaTa4848AY.430.000213
E9T9IaCaaTa4646B.1.1600.001435
E9T9IaCaaTa4242B.1.1770.000553
E9T9IaCaaTa4242B.1.2580.002795
E9T9IaCaaTa4040AY.1100.004508
E9T9IaCaaTa3535B.1.1.5190.00139
E9T9IaCaaTa3535B.1.4290.000824
E9T9IaCaaTa3232AY.4.20.000694
E9T9IaCaaTa2929B.1.5260.000682
E9T9IaCaaTa2727AY.3.10.002302
E9T9SAcaTca2525All0.000005
E9T9IaCaaTa2323AY.50.000475
E9T9IaCaaTa2020AY.1020.00053
E9T9IaCaaTa1919AY.390.00047
E9T9IaCaaTa1919B.1.6370.001388
E9T9IaCaaTa1818B.1.3610.023196
E9T9IaCaaTa1717AY.470.000529
E9T9IaCaaTa1515AY.1190.00053
E9T9IaCaaTa1515B.1.1.3180.004526
E9T9IaCaaTa1414AY.290.000221
E9T9AAcaGca1414B.1.1.70.000013
E9T9IaCaaTa1414C.370.001625
E9T9TacAacT1313AY.230.000907
E9T9AAcaGca1313AY.290.000205
E9T9IaCaaTa1313B.1.2400.002802
E9T9IaCaaTa1313B.1.2430.000905
E9T9IaCaaTa1313B.1.5960.001133
E9T9TacAacG712B.1.20.000062
E9T9TacAacT512B.1.20.000044
E9T9IaCaaTa1212B.1.3690.003423
E9T9delACA---1111All0.000002
E9T9IaCaaTa1111AY.200.000428
E9T9IaCaaTa1111AY.420.000443
E9T9IaCaaTa1111B.1.3110.00302
E9T9TacAacT711B.1.617.20.000026
E9T9TacAacG311B.1.617.20.000011
E9T9TacAacC111B.1.617.20.000004
E9T9IaCaaTa1010AY.140.00088
E9T9IaCaaTa1010B.1.36.360.00602
E9T9IaCaaTa1010P.1.140.000478
E9T9IaCaaTa99AY.1200.000335
E9T9TacAacT69AY.430.000027
E9T9TacAacG39AY.430.000013
E9T9IaCaaTa99B.1.4280.009184
E9T9IaCaaTa99B.1.617.10.001161
E9T9IaCaaTa88AY.260.000226
E9T9TacAacG68AY.30.00006
E9T9TacAacT28AY.30.00002
E9T9IaCaaTa88AY.46.40.001316
E9T9TacAacG68AY.50.000124
E9T9TacAacT28AY.50.000041
E9T9IaCaaTa88B.1.1.2220.001632
E9T9IaCaaTa88B.1.438.10.000858
E9T9IaCaaTa88B.1.5250.000905
E9T9TacAacT77AY.1020.000186
E9T9IaCaaTa77AY.1170.000592
E9T9IaCaaTa77AY.1180.000439
E9T9TacAacT57AY.290.000079
E9T9TacAacG27AY.290.000032
E9T9IaCaaTa77AY.750.000392
E9T9IaCaaTa77B.1.1.3650.039106
E9T9IaCaaTa77B.1.2230.019444
E9T9IaCaaTa77P.1.10.002224
E9T9IaCaaTa77R.10.00063
E9T9KaCaaAa66All0.000001
E9T9SAcaTca66AY.40.000009
E9T9AAcaGca66AY.40.000009
E9T9IaCaaTa66AY.540.000572
E9T9IaCaaTa66AY.90.000406
E9T9IaCaaTa66B.1.1.2880.011494
E9T9IaCaaTa66B.1.1.3040.016854
E9T9IaCaaTa66B.1.1.3350.077922
E9T9AAcaGca66B.1.1.4280.056604
E9T9IaCaaTa66B.1.3510.000178
E9T9RaCaaGa55All0.000001
E9T9IaCaaTa55AY.1130.000712
E9T9IaCaaTa55AY.330.000334
E9T9TacAacG35AY.440.000018
E9T9TacAacT15AY.440.000006
E9T9TacAacC15AY.440.000006
E9T9IaCaaTa55AY.450.000608
E9T9IaCaaTa55AY.46.60.000361
E9T9IaCaaTa55AY.610.000524
E9T9IaCaaTa55B.1.1.2970.011186
E9T9IaCaaTa55B.1.1.330.002104
E9T9IaCaaTa55B.1.1.3720.003444
E9T9IaCaaTa55B.1.177.810.000947
E9T9IaCaaTa55B.1.360.00073
E9T9IaCaaTa55B.1.4700.007022
E9T9IaCaaTa55B.1.5170.002135
E9T9TacAacG35P.10.000047
E9T9TacAacT25P.10.000032
E9T9IaCaaTa55Q.80.000825
E9T9del2ACa--a34All0.000001
E9T9del2ACA--N14All0
E9T9TacAacT44AY.250.000024
E9T9IaCaaTa44AY.340.000388
E9T9IaCaaTa44AY.39.10.000158
E9T9AAcaGca44AY.4.20.000087
E9T9IaCaaTa44AY.5.30.00135
E9T9IaCaaTa44AY.7.20.002237
E9T9IaCaaTa44AY.740.000463
E9T9IaCaaTa44AY.9.10.000335
E9T9IaCaaTa44AY.9.20.000147
E9T9IaCaaTa44B.1.1.280.001245
E9T9IaCaaTa44B.1.1.4160.00362
E9T9IaCaaTa44B.1.1080.023256
E9T9IaCaaTa44B.1.177.40.000844
E9T9IaCaaTa44B.1.177.70.000659
E9T9IaCaaTa44B.1.258.170.000416
E9T9IaCaaTa44C.350.003096
E9T9IaCaaTa44P.1.150.000929
E9T9IaCaaTa44P.20.000747
E9T9IaCaaTa33A.23.10.002113
E9T9IaCaaTa33AP.10.004505
E9T9TacAacT23AY.1030.000012
E9T9TacAacG13AY.1030.000006
E9T9AAcaGca33AY.1130.000427
E9T9IaCaaTa33AY.1140.000693
E9T9AAcaGca33AY.1170.000254
E9T9IaCaaTa33AY.1210.000406
E9T9AAcaGca33AY.30.00003
E9T9TacAacT23AY.330.000134
E9T9TacAacG13AY.330.000067
E9T9AAcaGca33AY.440.000018
E9T9SAcaTca33AY.440.000018
E9T9IaCaaTa33AY.99.20.000276
E9T9KaCaaAa33B.10.000027
E9T9TacAacG23B.10.000018
E9T9TacAacT13B.10.000009
E9T9IaCaaTa33B.1.1.3710.03125
E9T9IaCaaTa33B.1.1.4340.001046
E9T9IaCaaTa33B.1.1.700.001023
E9T9IaCaaTa33B.1.177.860.00055
E9T9IaCaaTa33B.1.214.30.021429
E9T9IaCaaTa33B.1.2210.000213
E9T9IaCaaTa33B.1.2320.001612
E9T9IaCaaTa33B.1.2340.000396
E9T9TacAacG23B.1.3510.000059
E9T9TacAacT13B.1.3510.00003
E9T9IaCaaTa33B.1.5270.011111
E9T9IaCaaTa33B.1.5610.001191
E9T9IaCaaTa33B.1.5820.001472
E9T9IaCaaTa33B.1.621.10.001517
E9T9IaCaaTa33Q.30.000435
E9T9delACA---220.111111
E9T9VACaGTa120.055556
E9T9AAcAGcG120.055556
E9T9VACAGTG120.055556
E9T9AAcaGca120.055556
E9T9IaCaaTa22AD.20.000438
E9T9PAcaCca12All0
E9T9PAcACcG12All0
E9T9VACaGTa12All0
E9T9VACAGTG12All0
E9T9IaCaaTa22AY.1080.002205
E9T9AAcaGca22AY.120.10.000642
E9T9TacAacG22AY.200.000078
E9T9IaCaaTa22AY.230.000139
E9T9IaCaaTa22AY.300.000791
E9T9IaCaaTa22AY.320.001065
E9T9IaCaaTa22AY.34.10.00102
E9T9IaCaaTa22AY.360.000296
E9T9TacAacG22AY.4.20.000043
E9T9IaCaaTa22AY.4.2.10.000298
E9T9IaCaaTa22AY.4.50.000215
E9T9TacAacG22AY.420.00008
E9T9TacAacT22AY.46.50.000397
E9T9IaCaaTa22AY.480.00093
E9T9AAcaGca22AY.50.000041
E9T9IaCaaTa22AY.650.001066
E9T9IaCaaTa22AY.690.000373
E9T9IaCaaTa22AY.70.000392
E9T9IaCaaTa22AY.700.000417
E9T9SAcaTca22AY.75.10.000361
E9T9IaCaaTa22AY.75.10.000361
E9T9TacAacG22AY.850.000854
E9T9IaCaaTa22AY.920.000575
E9T9IaCaaTa22B0.000256
E9T9SAcaTca22B.10.000018
E9T9AAcaGca22B.10.000018
E9T9TacAacT12B.1.10.000018
E9T9TacAacG12B.1.10.000018
E9T9IaCaaTa22B.1.1.2430.008163
E9T9IaCaaTa22B.1.1.2770.001517
E9T9IaCaaTa22B.1.1.3160.00185
E9T9IaCaaTa22B.1.1.3480.001592
E9T9IaCaaTa22B.1.1.3800.019608
E9T9IaCaaTa22B.1.1.3980.006452
E9T9IaCaaTa22B.1.1.4090.005666
E9T9IaCaaTa22B.1.1.5260.007092
E9T9SAcaTca22B.1.1.70.000002
E9T9IaCaaTa22B.1.1660.016949
E9T9AAcaGca22B.1.258.140.001961
E9T9IaCaaTa22B.1.3490.00143
E9T9IaCaaTa22B.1.36.290.001035
E9T9IaCaaTa22B.1.36.90.006431
E9T9IaCaaTa22B.1.3960.001411
E9T9IaCaaTa22B.1.4990.002101
E9T9IaCaaTa22B.1.5300.014286
E9T9IaCaaTa22B.1.5770.001375
E9T9IaCaaTa22B.1.6210.000177
E9T9IaCaaTa22B.580.020408
E9T9IaCaaTa22D.20.00015
E9T9IaCaaTa22Q.10.000253
E9T9MaCAaTG110.055556
E9T9IaCaaTa110.055556
E9T9TacAacG110.055556
E9T9IaCaaTa11A.20.000662
E9T9IaCaaTa11AH.30.003802
E9T9MaCAaTG11All0
E9T9del1acAac-11All0
E9T9IaCaaTa11AY.1000.000046
E9T9IaCaaTa11AY.1010.00049
E9T9AAcaGca11AY.1030.000006
E9T9IaCaaTa11AY.1050.000643
E9T9TacAacT11AY.1100.000113
E9T9IaCaaTa11AY.1110.000183
E9T9TacAacG11AY.1130.000142
E9T9IaCaaTa11AY.1160.000287
E9T9TacAacG11AY.1180.000063
E9T9delACA---11AY.1180.000063
E9T9IaCaaTa11AY.120.000316
E9T9IaCaaTa11AY.130.000161
E9T9TacAacG11AY.130.000161
E9T9AAcaGca11AY.160.00038
E9T9RaCaaGa11AY.250.000006
E9T9SAcaTca11AY.250.000006
E9T9TacAacG11AY.3.10.000085
E9T9TacAacT11AY.340.000097
E9T9TacAacG11AY.360.000148
E9T9delACA---11AY.390.000025
E9T9SAcaTca11AY.390.000025
E9T9RaCaaGa11AY.40.000002
E9T9TacAacT11AY.4.30.000842
E9T9RaCaaGa11AY.4.30.000842
E9T9TacAacT11AY.4.50.000107
E9T9IaCaaTa11AY.400.000964
E9T9delACA---11AY.430.000004
E9T9SAcaTca11AY.430.000004
E9T9PAcACcG11AY.430.000004
E9T9AAcaGca11AY.450.000122
E9T9IaCaaTa11AY.460.000104
E9T9TacAacG11AY.470.000031
E9T9KaCaaAa11AY.50.000021
E9T9IaCaaTa11AY.550.000917
E9T9TacAacG11AY.60.000041
E9T9IaCaaTa11AY.60.000041
E9T9IaCaaTa11AY.620.000436
E9T9IaCaaTa11AY.640.000595
E9T9delACA---11AY.680.000274
E9T9IaCaaTa11AY.7.10.000113
E9T9TacAacG11AY.740.000116
E9T9delACA---11AY.750.000056
E9T9IaCaaTa11AY.80.000606
E9T9IaCaaTa11AY.820.001357
E9T9IaCaaTa11AY.830.001724
E9T9IaCaaTa11AY.840.000437
E9T9AAcaGca11AY.9.20.000037
E9T9RaCaaGa11AY.9.20.000037
E9T9IaCaaTa11AY.900.000684
E9T9IaCaaTa11AY.910.00073
E9T9IaCaaTa11AY.98.10.000048
E9T9IaCaaTa11AY.990.001049
E9T9SAcaTca11B0.000128
E9T9del2ACa--a11B.10.000009
E9T9delACA---11B.1.10.000018
E9T9del2ACa--a11B.1.10.000018
E9T9PAcaCca11B.1.10.000018
E9T9IaCaaTa11B.1.1.100.001115
E9T9del1acAac-11B.1.1.1610.003534
E9T9IaCaaTa11B.1.1.1700.001247
E9T9IaCaaTa11B.1.1.1710.003676
E9T9IaCaaTa11B.1.1.1760.000439
E9T9IaCaaTa11B.1.1.1980.001468
E9T9IaCaaTa11B.1.1.2140.000055
E9T9IaCaaTa11B.1.1.2160.00089
E9T9IaCaaTa11B.1.1.2630.001558
E9T9IaCaaTa11B.1.1.2840.000107
E9T9IaCaaTa11B.1.1.3060.000438
E9T9IaCaaTa11B.1.1.3110.000358
E9T9IaCaaTa11B.1.1.3170.000412
E9T9IaCaaTa11B.1.1.3260.001761
E9T9IaCaaTa11B.1.1.3290.003846
E9T9TacAacT11B.1.1.3480.000796
E9T9AAcaGca11B.1.1.3560.008547
E9T9IaCaaTa11B.1.1.390.00051
E9T9IaCaaTa11B.1.1.3970.002252
E9T9IaCaaTa11B.1.1.4130.006897
E9T9IaCaaTa11B.1.1.4470.035714
E9T9IaCaaTa11B.1.1.4660.008696
E9T9IaCaaTa11B.1.1.4860.001577
E9T9IaCaaTa11B.1.1.500.000679
E9T9IaCaaTa11B.1.1.510.001718
E9T9IaCaaTa11B.1.1.520.012195
E9T9del2ACA--N11B.1.1.70.000001
E9T9delACA---11B.1.1.70.000001
E9T9RaCaaGa11B.1.1.70.000001
E9T9IaCaaTa11B.1.1.710.006061
E9T9SAcaTca11B.1.1.80.003584
E9T9IaCaaTa11B.1.1.830.00271
E9T9IaCaaTa11B.1.110.30.000718
E9T9IaCaaTa11B.1.1460.004237
E9T9SAcaTca11B.1.1470.000756
E9T9IaCaaTa11B.1.160.150.00495
E9T9IaCaaTa11B.1.160.280.002924
E9T9IaCaaTa11B.1.177.100.000878
E9T9IaCaaTa11B.1.177.110.001698
E9T9IaCaaTa11B.1.177.450.000381
E9T9IaCaaTa11B.1.177.540.000606
E9T9IaCaaTa11B.1.177.570.000281
E9T9IaCaaTa11B.1.2120.016667
E9T9delACA---11B.1.2180.005155
E9T9SAcaTca11B.1.2340.000132
E9T9IaCaaTa11B.1.2350.002519
E9T9del2ACa--a11B.1.2430.00007
E9T9delACA---11B.1.258.100.011364
E9T9IaCaaTa11B.1.258.210.007752
E9T9IaCaaTa11B.1.2650.001271
E9T9IaCaaTa11B.1.2700.005618
E9T9SAcaTca11B.1.36.170.000494
E9T9IaCaaTa11B.1.36.180.00042
E9T9IaCaaTa11B.1.36.270.000763
E9T9IaCaaTa11B.1.36.310.001751
E9T9IaCaaTa11B.1.36.350.002604
E9T9IaCaaTa11B.1.3670.000792
E9T9IaCaaTa11B.1.3710.001122
E9T9IaCaaTa11B.1.3780.006849
E9T9IaCaaTa11B.1.3820.008929
E9T9IaCaaTa11B.1.3900.010638
E9T9IaCaaTa11B.1.3910.001127
E9T9TacAacT11B.1.4270.00005
E9T9TacAacG11B.1.4290.000024
E9T9SAcaTca11B.1.4560.003268
E9T9IaCaaTa11B.1.4780.011765
E9T9IaCaaTa11B.1.4970.000315
E9T9IaCaaTa11B.1.5090.000866
E9T9TacAacG11B.1.5260.000024
E9T9IaCaaTa11B.1.5290.055556
E9T9IaCaaTa11B.1.5500.013699
E9T9TacAacG11B.1.5640.000426
E9T9IaCaaTa11B.1.5680.001111
E9T9IaCaaTa11B.1.5760.000907
E9T9IaCaaTa11B.1.5800.004065
E9T9TacAacT11B.1.5950.000261
E9T9IaCaaTa11B.1.5950.000261
E9T9SAcaTca11B.1.5960.000087
E9T9KaCaaAa11B.1.617.20.000004
E9T9AAcaGca11B.1.617.20.000004
E9T9IaCaaTa11B.1.619.10.000641
E9T9IaCaaTa11B.1.6230.000536
E9T9IaCaaTa11B.380.02381
E9T9IaCaaTa11B.40.002208
E9T9IaCaaTa11B.400.000364
E9T9IaCaaTa11C.140.004329
E9T9IaCaaTa11C.360.000911
E9T9TacAacT11C.370.000116
E9T9IaCaaTa11C.37.10.002618
E9T9IaCaaTa11P.1.130.000898
E9T9KaCaaAa11P.1.160.000374
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