CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 71

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
E	71	P71L		nonsyn	cCt	cTt	42213	42206	0.999834	26455-26457
E	71	P71L		nonsyn	cCT	cTA	42213	5	0.000118447	26455-26457
E	71	P71L		nonsyn	cCT	cTC	42213	1	0.0000236894	26455-26457
E	71	P71L		nonsyn	CCT	TTA	42213	1	0.0000236894	26455-26457
E	71	P71S		nonsyn	Cct	Tct	4138	4134	0.999033	26455-26457
E	71	P71S		nonsyn	CcT	TcC	4138	3	0.000724988	26455-26457
E	71	P71S		nonsyn	CcT	TcA	4138	1	0.000241663	26455-26457
E	71	P71P		syn	ccT	ccA	378	325	0.859788	26455-26457
E	71	P71P		syn	ccT	ccC	378	39	0.103175	26455-26457
E	71	P71P		syn	ccT	ccG	378	14	0.037037	26455-26457
E	71	P71H		nonsyn	cCt	cAt	339	337	0.9941	26455-26457
E	71	P71H		nonsyn	cCT	cAC	339	2	0.0058997	26455-26457
E	71	P71R		nonsyn	cCt	cGt	283	283	1	26455-26457
E	71	P71F		nonsyn	CCT	TTC	188	183	0.973404	26455-26457
E	71	P71F		nonsyn	CCt	TTt	188	5	0.0265957	26455-26457
E	71	P71T		nonsyn	Cct	Act	122	119	0.97541	26455-26457
E	71	P71T		nonsyn	CcT	AcG	122	3	0.0245902	26455-26457
E	71	P71del		del	CCT	---	65	65	1	26455-26457
E	71	P71V		nonsyn	CCT	GTA	35	26	0.742857	26455-26457
E	71	P71V		nonsyn	CCt	GTt	35	9	0.257143	26455-26457
E	71	P71A		nonsyn	Cct	Gct	23	10	0.434783	26455-26457
E	71	P71A		nonsyn	CcT	GcG	23	9	0.391304	26455-26457
E	71	P71A		nonsyn	CcT	GcA	23	4	0.173913	26455-26457
E	71	P71del1		del	Cct	-ct	9	4	0.444444	26455-26457
E	71	P71del1		del	cCT	cT-	9	3	0.333333	26455-26457
E	71	P71del1		del	ccT	cc-	9	1	0.111111	26455-26457
E	71	P71del1		del	CcT	-cN	9	1	0.111111	26455-26457
E	71	P71Y		nonsyn	CCt	TAt	6	4	0.666667	26455-26457
E	71	P71Y		nonsyn	CCT	TAC	6	2	0.333333	26455-26457

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
E	71	P71L	cCt	cTt	42206	42213	All	0.008072
E	71	P71L	cCT	cTA	5	42213	All	0.000001
E	71	P71L	CCT	TTA	1	42213	All	0
E	71	P71L	cCT	cTC	1	42213	All	0
E	71	P71L	cCt	cTt	32968	32968	B.1.351	0.980024
E	71	P71S	Cct	Tct	4134	4138	All	0.000791
E	71	P71S	CcT	TcC	3	4138	All	0.000001
E	71	P71S	CcT	TcA	1	4138	All	0
E	71	P71L	cCt	cTt	3247	3247	B.1.351.2	0.982451
E	71	P71L	cCt	cTt	1650	1650	B.1.351.5	0.989209
E	71	P71L	cCt	cTt	1130	1130	B.1.351.3	0.990359
E	71	P71S	Cct	Tct	964	964	B.1.243	0.06708
E	71	P71S	Cct	Tct	884	884	AY.4	0.001376
E	71	P71S	Cct	Tct	745	745	B.1.576	0.675431
E	71	P71L	cCt	cTt	698	698	B.1	0.006393
E	71	P71L	cCt	cTt	389	389	B.1.1.7	0.000348
E	71	P71P	ccT	ccA	325	378	All	0.000062
E	71	P71P	ccT	ccC	39	378	All	0.000007
E	71	P71P	ccT	ccG	14	378	All	0.000003
E	71	P71H	cCt	cAt	337	339	All	0.000064
E	71	P71H	cCT	cAC	2	339	All	0
E	71	P71P	ccT	ccA	297	297	AY.5	0.006133
E	71	P71S	Cct	Tct	285	285	P.1	0.00449
E	71	P71R	cCt	cGt	283	283	All	0.000054
E	71	P71L	cCt	cTt	203	203	AY.4	0.000316
E	71	P71S	Cct	Tct	200	200	B.1.1.7	0.000179
E	71	P71F	CCT	TTC	183	188	All	0.000035
E	71	P71F	CCt	TTt	5	188	All	0.000001
E	71	P71F	CCT	TTC	179	180	B.1.1.7	0.00016
E	71	P71F	CCt	TTt	1	180	B.1.1.7	0.000001
E	71	P71S	Cct	Tct	125	125	B.1	0.001145
E	71	P71T	Cct	Act	119	122	All	0.000023
E	71	P71T	CcT	AcG	3	122	All	0.000001
E	71	P71L	cCt	cTt	104	104	B.1.1	0.001887
E	71	P71L	cCt	cTt	104	104	B.1.2	0.000916
E	71	P71R	cCt	cGt	102	102	AY.3	0.001015
E	71	P71S	Cct	Tct	98	98	B.1.617.2	0.000369
E	71	P71L	cCt	cTt	97	97	B.1.617.2	0.000365
E	71	P71S	Cct	Tct	96	96	B.1.2	0.000845
E	71	P71L	cCt	cTt	93	93	AY.3	0.000925
E	71	P71L	cCt	cTt	87	87	P.1	0.001371
E	71	P71S	Cct	Tct	67	67	B.1.363	0.87013
E	71	P71del	CCT	---	65	65	All	0.000012
E	71	P71H	cCt	cAt	63	63	B.1.1.7	0.000056
E	71	P71L	cCt	cTt	49	49	AY.25	0.000295
E	71	P71R	cCt	cGt	49	49	B.1.617.2	0.000185
E	71	P71L	cCt	cTt	47	47	AY.44	0.000286
E	71	P71H	cCt	cAt	46	46	AY.43	0.000204
E	71	P71S	Cct	Tct	43	43	AY.43	0.000191
E	71	P71L	cCt	cTt	41	41	AY.43	0.000182
E	71	P71T	Cct	Act	39	40	B.1.1.7	0.000035
E	71	P71T	CcT	AcG	1	40	B.1.1.7	0.000001
E	71	P71S	Cct	Tct	37	37	B.1.1.519	0.001469
E	71	P71H	cCt	cAt	36	36	AY.4	0.000056
E	71	P71L	cCt	cTt	36	36	B.1.526	0.000846
E	71	P71V	CCT	GTA	26	35	All	0.000005
E	71	P71V	CCt	GTt	9	35	All	0.000002
E	71	P71S	Cct	Tct	35	35	AY.44	0.000213
E	71	P71S	Cct	Tct	33	33	AY.39.1	0.001307
E	71	P71S	Cct	Tct	33	33	AY.98.1	0.001598
E	71	P71S	Cct	Tct	33	33	B.1.199	0.136364
E	71	P71L	cCt	cTt	32	32	AY.103	0.000199
E	71	P71L	cCt	cTt	30	30	B.1.177	0.000395
E	71	P71L	cCt	cTt	29	29	AY.29	0.000457
E	71	P71L	cCt	cTt	28	28	AY.26	0.000793
E	71	P71L	cCt	cTt	28	28	B.1.554	0.123348
E	71	P71L	cCt	cTt	26	26	B.1.637	0.0019
E	71	P71R	cCt	cGt	25	25	AY.91	0.018262
E	71	P71L	cCt	cTt	25	25	B.1.221	0.001776
E	71	P71L	cCt	cTt	24	24	B.1.429	0.000565
E	71	P71A	Cct	Gct	10	23	All	0.000002
E	71	P71A	CcT	GcG	9	23	All	0.000002
E	71	P71A	CcT	GcA	4	23	All	0.000001
E	71	P71L	cCt	cTt	23	23	B.1.170	0.099138
E	71	P71L	cCt	cTt	23	23	B.1.36.17	0.011364
E	71	P71H	cCt	cAt	22	22	AY.44	0.000134
E	71	P71L	cCt	cTt	22	22	B.1.351.1	0.846154
E	71	P71T	Cct	Act	22	22	B.1.617.2	0.000083
E	71	P71P	ccT	ccG	10	21	B.1.1.7	0.000009
E	71	P71P	ccT	ccC	10	21	B.1.1.7	0.000009
E	71	P71P	ccT	ccA	1	21	B.1.1.7	0.000001
E	71	P71L	cCt	cTt	21	21	B.1.636	0.14094
E	71	P71L	cCt	cTt	20	20	AY.33	0.001336
E	71	P71L	cCt	cTt	19	19	AD.1	0.078189
E	71	P71S	Cct	Tct	19	19	AY.39.1.1	0.013768
E	71	P71S	Cct	Tct	19	19	B.1.36	0.002772
E	71	P71L	cCt	cTt	19	19	B.1.595	0.004958
E	71	P71L	cCt	cTt	18	18	AY.39	0.000445
E	71	P71L	cCt	cTt	18	18	AY.75	0.001008
E	71	P71R	cCt	cGt	18	18	B.1.1.7	0.000016
E	71	P71H	cCt	cAt	17	17	B.1.617.2	0.000064
E	71	P71S	Cct	Tct	16	16	AY.25	0.000096
E	71	P71L	cCt	cTt	15	15	B.1.1.176	0.006591
E	71	P71P	ccT	ccA	15	15	B.1.617.2	0.000056
E	71	P71L	cCt	cTt	15	15	B.1.620	0.014191
E	71	P71L	cCt	cTt	14	14	AY.120	0.000521
E	71	P71S	Cct	Tct	14	14	AY.46	0.001457
E	71	P71S	Cct	Tct	14	14	AY.49	0.044728
E	71	P71L	cCt	cTt	14	14	B.1.1.519	0.000556
E	71	P71L	cCt	cTt	14	14	B.1.160	0.000437
E	71	P71L	cCt	cTt	14	14	C.37	0.001625
E	71	P71L	cCt	cTt	14	14	P.1.14	0.000669
E	71	P71H	cCt	cAt	14	14	R.1	0.00126
E	71	P71L	cCt	cTt	13	13	B.1.1.3	0.113043
E	71	P71L	cCt	cTt	13	13	B.1.524	0.018284
E	71	P71S	Cct	Tct	13	13	B.1.596	0.001133
E	71	P71S	Cct	Tct	12	12	AY.75.1	0.002164
E	71	P71T	Cct	Act	12	12	AY.92	0.003447
E	71	P71S	Cct	Tct	11	12	B.1.221	0.000781
E	71	P71S	CcT	TcC	1	12	B.1.221	0.000071
E	71	P71L	cCt	cTt	12	12	B.1.243	0.000835
E	71	P71L	cCt	cTt	11	12	B.1.621	0.000974
E	71	P71L	cCT	cTA	1	12	B.1.621	0.000089
E	71	P71S	Cct	Tct	12	12	B.1.637	0.000877
E	71	P71L	cCt	cTt	11	11	AY.41	0.003233
E	71	P71L	cCt	cTt	11	11	AY.5	0.000227
E	71	P71del	CCT	---	11	11	B.1	0.000101
E	71	P71L	cCt	cTt	11	11	B.1.1.398	0.035484
E	71	P71S	Cct	Tct	11	11	B.1.427	0.000555
E	71	P71L	cCt	cTt	11	11	B.1.523	0.026961
E	71	P71S	Cct	Tct	11	11	B.1.617.3	0.032836
E	71	P71L	cCt	cTt	10	10	AY.4.2	0.000217
E	71	P71R	cCt	cGt	10	10	AY.43	0.000044
E	71	P71H	cCt	cAt	10	10	AY.98.1	0.000484
E	71	P71L	cCt	cTt	10	10	B	0.001278
E	71	P71H	cCt	cAt	10	10	B.1	0.000092
E	71	P71S	Cct	Tct	10	10	B.1.1	0.000181
E	71	P71L	cCt	cTt	10	10	B.1.1.186	0.034364
E	71	P71L	cCt	cTt	10	10	B.1.1.37	0.001929
E	71	P71S	Cct	Tct	10	10	B.1.177	0.000132
E	71	P71L	cCt	cTt	10	10	B.1.221.3	0.008333
E	71	P71L	cCt	cTt	10	10	B.1.596	0.000871
E	71	P71del1	Cct	-ct	4	9	All	0.000001
E	71	P71del1	cCT	cT-	3	9	All	0.000001
E	71	P71del1	ccT	cc-	1	9	All	0
E	71	P71del1	CcT	-cN	1	9	All	0
E	71	P71H	cCt	cAt	9	9	AY.103	0.000056
E	71	P71R	cCt	cGt	9	9	AY.25	0.000054
E	71	P71S	Cct	Tct	9	9	AY.3	0.00009
E	71	P71R	cCt	cGt	9	9	AY.34	0.000873
E	71	P71S	Cct	Tct	9	9	AY.46.4	0.001481
E	71	P71S	Cct	Tct	9	9	B.1.1.189	0.013616
E	71	P71H	cCt	cAt	9	9	B.1.2	0.000079
E	71	P71L	cCt	cTt	9	9	B.1.258	0.000599
E	71	P71L	cCt	cTt	9	9	B.1.258.17	0.000936
E	71	P71L	cCt	cTt	9	9	B.1.311	0.002471
E	71	P71L	cCt	cTt	8	8	AY.20	0.000311
E	71	P71T	Cct	Act	8	8	AY.4	0.000012
E	71	P71R	cCt	cGt	8	8	AY.44	0.000049
E	71	P71L	cCt	cTt	8	8	AY.98.1	0.000387
E	71	P71L	cCt	cTt	8	8	B.1.1.39	0.004077
E	71	P71S	Cct	Tct	8	8	B.1.1.434	0.002788
E	71	P71A	CcT	GcG	4	8	B.1.1.7	0.000004
E	71	P71A	Cct	Gct	4	8	B.1.1.7	0.000004
E	71	P71L	cCt	cTt	8	8	B.1.177.21	0.000612
E	71	P71L	cCt	cTt	8	8	B.1.561	0.003176
E	71	P71del	CCT	---	8	8	P.1	0.000126
E	71	P71L	cCt	cTt	7	8	P.1.1	0.002224
E	71	P71L	cCT	cTA	1	8	P.1.1	0.000318
E	71	P71S	Cct	Tct	8	8	P.1.12	0.003872
E	71	P71L	cCt	cTt	8	8	P.2	0.001493
E	71	P71S	Cct	Tct	7	7	AY.102	0.000186
E	71	P71S	Cct	Tct	7	7	AY.120	0.00026
E	71	P71H	cCt	cAt	7	7	AY.25	0.000042
E	71	P71R	cCt	cGt	7	7	AY.4	0.000011
E	71	P71L	cCt	cTt	7	7	AY.93	0.001912
E	71	P71L	cCt	cTt	7	7	B.1.1.28	0.002179
E	71	P71L	cCt	cTt	7	7	B.1.1.311	0.002507
E	71	P71L	cCt	cTt	7	7	B.1.177.15	0.004416
E	71	P71L	cCt	cTt	7	7	B.1.36.36	0.004214
E	71	P71L	cCt	cTt	7	7	B.1.396	0.00494
E	71	P71H	cCt	cAt	7	7	B.1.429	0.000165
E	71	P71T	Cct	Act	7	7	B.1.526	0.000165
E	71	P71L	cCt	cTt	7	7	B.1.602	0.045752
E	71	P71L	cCt	cTt	7	7	B.1.609	0.003356
E	71	P71L	cCt	cTt	3	6		0.166667
E	71	P71S	Cct	Tct	3	6		0.166667
E	71	P71S	CcT	TcC	2	6		0.111111
E	71	P71L	cCT	cTA	1	6		0.055556
E	71	P71L	CCT	TTA	1	6		0.055556
E	71	P71L	cCT	cTC	1	6		0.055556
E	71	P71S	CcT	TcA	1	6		0.055556
E	71	P71S	Cct	Tct	6	6	A.2.5	0.002994
E	71	P71Y	CCt	TAt	4	6	All	0.000001
E	71	P71Y	CCT	TAC	2	6	All	0
E	71	P71L	cCt	cTt	6	6	AY.100	0.000276
E	71	P71S	Cct	Tct	6	6	AY.103	0.000037
E	71	P71L	cCt	cTt	6	6	AY.119	0.000212
E	71	P71H	cCt	cAt	6	6	AY.20	0.000233
E	71	P71H	cCt	cAt	6	6	AY.3	0.00006
E	71	P71S	Cct	Tct	6	6	AY.30	0.002374
E	71	P71L	cCt	cTt	6	6	AY.42	0.000241
E	71	P71L	cCt	cTt	6	6	AY.47	0.000187
E	71	P71L	cCt	cTt	5	6	AY.61	0.000524
E	71	P71L	cCT	cTA	1	6	AY.61	0.000105
E	71	P71S	Cct	Tct	6	6	B.1.177.81	0.001136
E	71	P71L	cCt	cTt	6	6	B.1.177.82	0.002864
E	71	P71L	cCt	cTt	6	6	B.1.234	0.000792
E	71	P71S	Cct	Tct	6	6	B.1.285	0.545455
E	71	P71L	cCt	cTt	6	6	C.30	0.010363
E	71	P71L	cCt	cTt	5	5	A	0.001935
E	71	P71L	cCt	cTt	5	5	A.1	0.001409
E	71	P71S	Cct	Tct	5	5	AY.100	0.00023
E	71	P71L	cCt	cTt	5	5	AY.102	0.000133
E	71	P71H	cCt	cAt	5	5	AY.3.1	0.000426
E	71	P71S	Cct	Tct	5	5	AY.34	0.000485
E	71	P71L	cCt	cTt	5	5	AY.45	0.000608
E	71	P71L	cCt	cTt	5	5	AY.46.6	0.000361
E	71	P71S	Cct	Tct	5	5	AY.54	0.000477
E	71	P71L	cCt	cTt	5	5	AY.98	0.000395
E	71	P71L	cCt	cTt	5	5	B.1.1.1	0.001633
E	71	P71L	cCt	cTt	5	5	B.1.1.284	0.000537
E	71	P71L	cCt	cTt	5	5	B.1.1.416	0.004525
E	71	P71S	Cct	Tct	5	5	B.1.1.63	0.001929
E	71	P71del	CCT	---	5	5	B.1.1.7	0.000004
E	71	P71S	Cct	Tct	5	5	B.1.160	0.000156
E	71	P71P	ccT	ccC	4	5	B.1.177	0.000053
E	71	P71P	ccT	ccG	1	5	B.1.177	0.000013
E	71	P71T	Cct	Act	5	5	B.1.2	0.000044
E	71	P71L	cCt	cTt	5	5	B.1.35	0.042373
E	71	P71L	cCt	cTt	5	5	B.1.36.29	0.002587
E	71	P71L	cCt	cTt	5	5	B.1.367	0.003962
E	71	P71A	CcT	GcG	5	5	B.1.525	0.000566
E	71	P71T	Cct	Act	3	5	B.1.525	0.000339
E	71	P71T	CcT	AcG	2	5	B.1.525	0.000226
E	71	P71S	Cct	Tct	5	5	B.1.526	0.000118
E	71	P71S	Cct	Tct	5	5	B.1.561	0.001985
E	71	P71S	Cct	Tct	5	5	B.1.621	0.000443
E	71	P71V	CCT	GTA	4	5	P.1.1	0.001271
E	71	P71V	CCt	GTt	1	5	P.1.1	0.000318
E	71	P71L	cCt	cTt	5	5	R.1	0.00045
E	71	P71del	CCT	---	4	4		0.222222
E	71	P71L	cCt	cTt	4	4	A.2.5	0.001996
E	71	P71L	cCt	cTt	4	4	AY.14	0.000352
E	71	P71L	cCt	cTt	4	4	AY.23	0.000279
E	71	P71L	cCt	cTt	4	4	AY.24	0.001724
E	71	P71P	ccT	ccC	4	4	AY.25	0.000024
E	71	P71H	cCt	cAt	4	4	AY.33	0.000267
E	71	P71L	cCt	cTt	4	4	AY.36	0.000593
E	71	P71S	Cct	Tct	4	4	AY.45	0.000487
E	71	P71L	cCt	cTt	4	4	AY.56	0.006421
E	71	P71S	Cct	Tct	4	4	AY.6	0.000165
E	71	P71V	CCT	GTA	3	4	AY.61	0.000314
E	71	P71V	CCt	GTt	1	4	AY.61	0.000105
E	71	P71L	cCt	cTt	4	4	AY.9	0.00027
E	71	P71S	Cct	Tct	4	4	AY.98	0.000316
E	71	P71P	ccT	ccC	3	4	B.1	0.000027
E	71	P71P	ccT	ccA	1	4	B.1	0.000009
E	71	P71L	cCt	cTt	4	4	B.1.1.291	0.00297
E	71	P71L	cCt	cTt	4	4	B.1.1.306	0.001754
E	71	P71H	cCt	cAt	4	4	B.1.165	0.047619
E	71	P71V	CCT	GTA	4	4	B.1.177	0.000053
E	71	P71L	cCt	cTt	4	4	B.1.177.57	0.001124
E	71	P71L	cCt	cTt	4	4	B.1.177.73	0.002265
E	71	P71R	cCt	cGt	4	4	B.1.177.82	0.001909
E	71	P71L	cCt	cTt	4	4	B.1.404	0.005208
E	71	P71S	Cct	Tct	4	4	B.1.429	0.000094
E	71	P71L	cCt	cTt	4	4	B.1.438.1	0.000429
E	71	P71L	cCt	cTt	4	4	B.1.470	0.005618
E	71	P71S	Cct	Tct	4	4	B.1.595	0.001044
E	71	P71H	cCt	cAt	4	4	B.1.596	0.000349
E	71	P71L	cCt	cTt	4	4	B.1.623	0.002146
E	71	P71L	cCt	cTt	4	4	B.6	0.00364
E	71	P71L	cCt	cTt	4	4	N.5	0.007067
E	71	P71S	Cct	Tct	4	4	P.1.1	0.001271
E	71	P71L	cCt	cTt	4	4	P.1.12	0.001936
E	71	P71del	CCT	---	4	4	P.1.15	0.000929
E	71	P71L	cCt	cTt	4	4	P.1.15	0.000929
E	71	P71L	cCt	cTt	4	4	Q.3	0.00058
E	71	P71P	ccT	ccC	2	3		0.111111
E	71	P71P	ccT	ccA	1	3		0.055556
E	71	P71L	cCt	cTt	3	3	AD.2	0.000657
E	71	P71T	Cct	Act	3	3	AY.103	0.000019
E	71	P71S	Cct	Tct	3	3	AY.116	0.00086
E	71	P71L	cCt	cTt	3	3	AY.116.1	0.000934
E	71	P71L	cCt	cTt	3	3	AY.34	0.000291
E	71	P71H	cCt	cAt	3	3	AY.45	0.000365
E	71	P71S	Cct	Tct	3	3	AY.47	0.000093
E	71	P71S	Cct	Tct	3	3	AY.5	0.000062
E	71	P71L	cCt	cTt	3	3	AY.59	0.001589
E	71	P71H	cCt	cAt	3	3	AY.6	0.000123
E	71	P71S	Cct	Tct	3	3	AY.70	0.000626
E	71	P71T	Cct	Act	3	3	AY.84	0.001312
E	71	P71L	cCt	cTt	3	3	AY.9.2	0.00011
E	71	P71H	cCt	cAt	3	3	AY.92	0.000862
E	71	P71H	cCt	cAt	3	3	AY.99.2	0.000276
E	71	P71L	cCt	cTt	3	3	AY.99.2	0.000276
E	71	P71T	Cct	Act	3	3	B.1	0.000027
E	71	P71S	Cct	Tct	3	3	B.1.1.214	0.000166
E	71	P71L	cCt	cTt	3	3	B.1.1.409	0.008499
E	71	P71L	cCt	cTt	3	3	B.1.1.420	0.003018
E	71	P71L	cCt	cTt	3	3	B.1.1.432	0.003797
E	71	P71L	cCt	cTt	3	3	B.1.1.507	0.026087
E	71	P71V	CCT	GTA	2	3	B.1.1.7	0.000002
E	71	P71V	CCt	GTt	1	3	B.1.1.7	0.000001
E	71	P71R	cCt	cGt	3	3	B.1.177	0.00004
E	71	P71S	Cct	Tct	3	3	B.1.177.52	0.005272
E	71	P71L	cCt	cTt	3	3	B.1.177.8	0.002257
E	71	P71L	cCt	cTt	3	3	B.1.240	0.000647
E	71	P71V	CCT	GTA	3	3	B.1.258	0.0002
E	71	P71V	CCt	GTt	3	3	B.1.351	0.000089
E	71	P71del1	cCT	cT-	3	3	B.1.351	0.000089
E	71	P71L	cCt	cTt	3	3	B.1.36	0.000438
E	71	P71S	Cct	Tct	3	3	B.1.397	0.014563
E	71	P71L	cCt	cTt	3	3	B.1.427	0.000151
E	71	P71L	cCt	cTt	3	3	B.1.549	0.021583
E	71	P71L	cCt	cTt	3	3	B.1.582	0.001472
E	71	P71L	cCt	cTt	3	3	B.1.619	0.002613
E	71	P71del	CCT	---	3	3	B.1.621	0.000266
E	71	P71S	Cct	Tct	3	3	B.1.621.1	0.001517
E	71	P71L	cCt	cTt	3	3	C.36	0.002732
E	71	P71P	ccT	ccC	3	3	C.37	0.000348
E	71	P71del	CCT	---	3	3	C.37	0.000348
E	71	P71L	cCt	cTt	3	3	D.2	0.000225
E	71	P71S	Cct	Tct	3	3	P.1.14	0.000143
E	71	P71L	cCt	cTt	3	3	P.1.7	0.000958
E	71	P71S	Cct	Tct	3	3	Q.8	0.000495
E	71	P71L	cCt	cTt	3	3	Q.8	0.000495
E	71	P71H	cCT	cAC	1	2		0.055556
E	71	P71Y	CCt	TAt	1	2		0.055556
E	71	P71Y	CCT	TAC	1	2		0.055556
E	71	P71F	CCt	TTt	1	2		0.055556
E	71	P71F	CCT	TTC	1	2		0.055556
E	71	P71H	cCt	cAt	1	2		0.055556
E	71	P71V	CCT	GTA	2	2	A.2.5.2	0.003145
E	71	P71S	Cct	Tct	2	2	A.4	0.025641
E	71	P71L	cCt	cTt	2	2	AS.2	0.03125
E	71	P71L	cCt	cTt	2	2	AU.3	0.004219
E	71	P71R	cCt	cGt	2	2	AY.103	0.000012
E	71	P71P	ccT	ccC	2	2	AY.103	0.000012
E	71	P71T	Cct	Act	2	2	AY.111	0.000366
E	71	P71L	cCt	cTt	2	2	AY.113	0.000285
E	71	P71L	cCt	cTt	2	2	AY.117	0.000169
E	71	P71H	cCt	cAt	2	2	AY.120	0.000074
E	71	P71H	cCt	cAt	2	2	AY.120.2	0.002571
E	71	P71S	Cct	Tct	2	2	AY.121	0.000271
E	71	P71L	cCt	cTt	2	2	AY.121	0.000271
E	71	P71L	cCt	cTt	2	2	AY.16	0.000759
E	71	P71T	Cct	Act	2	2	AY.23	0.000139
E	71	P71del	CCT	---	2	2	AY.25	0.000012
E	71	P71H	cCt	cAt	2	2	AY.26	0.000057
E	71	P71S	Cct	Tct	2	2	AY.26	0.000057
E	71	P71L	cCt	cTt	2	2	AY.28	0.003781
E	71	P71L	cCt	cTt	2	2	AY.30	0.000791
E	71	P71S	Cct	Tct	2	2	AY.37	0.000632
E	71	P71R	cCt	cGt	2	2	AY.39	0.000049
E	71	P71del	CCT	---	2	2	AY.4	0.000003
E	71	P71R	cCt	cGt	2	2	AY.4.2	0.000043
E	71	P71S	Cct	Tct	2	2	AY.4.5	0.000215
E	71	P71del	CCT	---	2	2	AY.43	0.000009
E	71	P71L	cCt	cTt	2	2	AY.46	0.000208
E	71	P71S	Cct	Tct	2	2	AY.46.6	0.000144
E	71	P71P	ccT	ccC	2	2	AY.47	0.000062
E	71	P71S	Cct	Tct	2	2	AY.48	0.00093
E	71	P71L	cCt	cTt	2	2	AY.55	0.001835
E	71	P71A	Cct	Gct	1	2	AY.61	0.000105
E	71	P71A	CcT	GcA	1	2	AY.61	0.000105
E	71	P71S	Cct	Tct	2	2	AY.67	0.000929
E	71	P71L	cCt	cTt	2	2	AY.68	0.000547
E	71	P71L	cCt	cTt	2	2	AY.7.1	0.000225
E	71	P71S	Cct	Tct	2	2	AY.71	0.00095
E	71	P71R	cCt	cGt	2	2	AY.75.1	0.000361
E	71	P71S	Cct	Tct	2	2	AY.9.1	0.000167
E	71	P71L	cCt	cTt	2	2	AY.92	0.000575
E	71	P71H	cCt	cAt	2	2	B	0.000256
E	71	P71R	cCt	cGt	2	2	B.1	0.000018
E	71	P71L	cCt	cTt	2	2	B.1.1.135	0.00939
E	71	P71L	cCt	cTt	2	2	B.1.1.210	0.011429
E	71	P71S	Cct	Tct	2	2	B.1.1.216	0.001781
E	71	P71P	ccT	ccA	2	2	B.1.1.265	0.006309
E	71	P71L	cCt	cTt	2	2	B.1.1.317	0.000823
E	71	P71T	Cct	Act	2	2	B.1.1.317	0.000823
E	71	P71L	cCt	cTt	2	2	B.1.1.318	0.000604
E	71	P71S	Cct	Tct	2	2	B.1.1.354	0.008772
E	71	P71L	cCt	cTt	2	2	B.1.1.372	0.001377
E	71	P71L	cCt	cTt	2	2	B.1.1.397	0.004505
E	71	P71L	cCt	cTt	2	2	B.1.1.434	0.000697
E	71	P71L	cCt	cTt	2	2	B.1.1.487	0.011173
E	71	P71L	cCt	cTt	2	2	B.1.160.15	0.009901
E	71	P71P	ccT	ccG	2	2	B.1.177.15	0.001262
E	71	P71L	cCt	cTt	2	2	B.1.177.31	0.022989
E	71	P71L	cCt	cTt	2	2	B.1.177.60	0.000437
E	71	P71L	cCt	cTt	2	2	B.1.177.65	0.001331
E	71	P71L	cCt	cTt	2	2	B.1.177.7	0.00033
E	71	P71L	cCt	cTt	2	2	B.1.177.81	0.000379
E	71	P71V	CCT	GTA	2	2	B.1.177.83	0.002963
E	71	P71L	cCt	cTt	2	2	B.1.177.86	0.000367
E	71	P71L	cCt	cTt	2	2	B.1.214.2	0.001199
E	71	P71L	cCt	cTt	2	2	B.1.214.3	0.014286
E	71	P71Y	CCt	TAt	1	2	B.1.221	0.000071
E	71	P71H	cCt	cAt	1	2	B.1.221	0.000071
E	71	P71Y	CCT	TAC	1	2	B.1.221	0.000071
E	71	P71H	cCT	cAC	1	2	B.1.221	0.000071
E	71	P71S	Cct	Tct	2	2	B.1.240	0.000431
E	71	P71S	Cct	Tct	2	2	B.1.258.17	0.000208
E	71	P71S	Cct	Tct	2	2	B.1.36.1	0.002281
E	71	P71L	cCt	cTt	2	2	B.1.36.8	0.002
E	71	P71L	cCt	cTt	2	2	B.1.375	0.001639
E	71	P71L	cCt	cTt	2	2	B.1.400	0.000858
E	71	P71H	cCt	cAt	2	2	B.1.427	0.000101
E	71	P71S	Cct	Tct	2	2	B.1.452	0.027397
E	71	P71L	cCt	cTt	2	2	B.1.469	0.00722
E	71	P71S	Cct	Tct	2	2	B.1.470	0.002809
E	71	P71L	cCt	cTt	2	2	B.1.499	0.002101
E	71	P71S	Cct	Tct	2	2	B.1.499	0.002101
E	71	P71R	cCt	cGt	2	2	B.1.517	0.000854
E	71	P71L	cCt	cTt	2	2	B.1.525	0.000226
E	71	P71V	CCT	GTA	1	2	B.1.525	0.000113
E	71	P71V	CCt	GTt	1	2	B.1.525	0.000113
E	71	P71R	cCt	cGt	2	2	B.1.526	0.000047
E	71	P71L	cCt	cTt	2	2	B.1.619.1	0.001283
E	71	P71V	CCT	GTA	1	2	B.1.621	0.000089
E	71	P71V	CCt	GTt	1	2	B.1.621	0.000089
E	71	P71A	Cct	Gct	1	2	B.1.621	0.000089
E	71	P71A	CcT	GcA	1	2	B.1.621	0.000089
E	71	P71A	CcT	GcA	1	2	B.1.627	0.00202
E	71	P71L	cCt	cTt	1	2	B.1.627	0.00202
E	71	P71L	cCT	cTA	1	2	B.1.627	0.00202
E	71	P71V	CCT	GTA	1	2	B.1.627	0.00202
E	71	P71A	Cct	Gct	1	2	B.1.627	0.00202
E	71	P71V	CCt	GTt	1	2	B.1.627	0.00202
E	71	P71S	Cct	Tct	2	2	B.1.78	0.017094
E	71	P71L	cCt	cTt	2	2	B.3	0.001661
E	71	P71L	cCt	cTt	2	2	B.40	0.000729
E	71	P71L	cCt	cTt	2	2	C.16	0.002121
E	71	P71F	CCT	TTC	2	2	C.36.3	0.001134
E	71	P71L	cCt	cTt	2	2	C.36.3	0.001134
E	71	P71H	cCt	cAt	2	2	C.37	0.000232
E	71	P71L	cCt	cTt	2	2	C.8	0.008929
E	71	P71S	Cct	Tct	2	2	N.9	0.011905
E	71	P71R	cCt	cGt	2	2	P.1	0.000032
E	71	P71P	ccT	ccC	2	2	P.1	0.000032
E	71	P71A	CcT	GcA	1	2	P.1.1	0.000318
E	71	P71A	Cct	Gct	1	2	P.1.1	0.000318
E	71	P71L	cCt	cTt	2	2	P.1.16	0.000748
E	71	P71H	cCt	cAt	2	2	P.1.17	0.000324
E	71	P71L	cCt	cTt	2	2	P.1.8	0.009569
E	71	P71H	cCt	cAt	2	2	Q.8	0.00033
E	71	P71T	Cct	Act	1	1	A	0.000387
E	71	P71S	Cct	Tct	1	1	A.1	0.000282
E	71	P71S	Cct	Tct	1	1	A.17	0.090909
E	71	P71L	cCt	cTt	1	1	A.2	0.000662
E	71	P71T	Cct	Act	1	1	A.2.4	0.003367
E	71	P71L	cCt	cTt	1	1	A.23.1	0.000704
E	71	P71L	cCt	cTt	1	1	A.27	0.001656
E	71	P71L	cCt	cTt	1	1	A.5	0.001923
E	71	P71S	Cct	Tct	1	1	A.9	0.045455
E	71	P71L	cCt	cTt	1	1	AA.1	0.007246
E	71	P71L	cCt	cTt	1	1	AU.2	0.002421
E	71	P71P	ccT	ccG	1	1	AY.1	0.000396
E	71	P71L	cCt	cTt	1	1	AY.1	0.000396
E	71	P71R	cCt	cGt	1	1	AY.100	0.000046
E	71	P71P	ccT	ccA	1	1	AY.100	0.000046
E	71	P71H	cCt	cAt	1	1	AY.102	0.000027
E	71	P71L	cCt	cTt	1	1	AY.106	0.000335
E	71	P71L	cCt	cTt	1	1	AY.107	0.000466
E	71	P71del	CCT	---	1	1	AY.108	0.001103
E	71	P71L	cCt	cTt	1	1	AY.110	0.000113
E	71	P71L	cCt	cTt	1	1	AY.111	0.000183
E	71	P71S	Cct	Tct	1	1	AY.113	0.000142
E	71	P71H	cCt	cAt	1	1	AY.113	0.000142
E	71	P71R	cCt	cGt	1	1	AY.115	0.005208
E	71	P71S	Cct	Tct	1	1	AY.116.1	0.000311
E	71	P71R	cCt	cGt	1	1	AY.117	0.000085
E	71	P71del	CCT	---	1	1	AY.118	0.000063
E	71	P71H	cCt	cAt	1	1	AY.118	0.000063
E	71	P71L	cCt	cTt	1	1	AY.118	0.000063
E	71	P71S	Cct	Tct	1	1	AY.119	0.000035
E	71	P71R	cCt	cGt	1	1	AY.12	0.000316
E	71	P71del	CCT	---	1	1	AY.120	0.000037
E	71	P71H	cCt	cAt	1	1	AY.120.1	0.000321
E	71	P71H	cCt	cAt	1	1	AY.13	0.000161
E	71	P71P	ccT	ccC	1	1	AY.20	0.000039
E	71	P71S	Cct	Tct	1	1	AY.20	0.000039
E	71	P71R	cCt	cGt	1	1	AY.22	0.002092
E	71	P71R	cCt	cGt	1	1	AY.23	0.00007
E	71	P71H	cCt	cAt	1	1	AY.23	0.00007
E	71	P71del	CCT	---	1	1	AY.26	0.000028
E	71	P71S	Cct	Tct	1	1	AY.27	0.000065
E	71	P71S	Cct	Tct	1	1	AY.29	0.000016
E	71	P71L	cCt	cTt	1	1	AY.29.1	0.000221
E	71	P71R	cCt	cGt	1	1	AY.29.1	0.000221
E	71	P71del	CCT	---	1	1	AY.3	0.00001
E	71	P71L	cCt	cTt	1	1	AY.3.1	0.000085
E	71	P71H	cCt	cAt	1	1	AY.32	0.000532
E	71	P71S	Cct	Tct	1	1	AY.33	0.000067
E	71	P71L	cCt	cTt	1	1	AY.34.1	0.00051
E	71	P71L	cCt	cTt	1	1	AY.38	0.000499
E	71	P71H	cCt	cAt	1	1	AY.38	0.000499
E	71	P71del	CCT	---	1	1	AY.39	0.000025
E	71	P71S	Cct	Tct	1	1	AY.39	0.000025
E	71	P71H	cCt	cAt	1	1	AY.39	0.000025
E	71	P71L	cCt	cTt	1	1	AY.39.1	0.00004
E	71	P71V	CCT	GTA	1	1	AY.39.1	0.00004
E	71	P71L	cCt	cTt	1	1	AY.4.2.1	0.000149
E	71	P71L	cCt	cTt	1	1	AY.4.4	0.000409
E	71	P71H	cCt	cAt	1	1	AY.4.5	0.000107
E	71	P71L	cCt	cTt	1	1	AY.4.5	0.000107
E	71	P71S	Cct	Tct	1	1	AY.41	0.000294
E	71	P71S	Cct	Tct	1	1	AY.42	0.00004
E	71	P71T	Cct	Act	1	1	AY.43	0.000004
E	71	P71del1	Cct	-ct	1	1	AY.43	0.000004
E	71	P71Y	CCt	TAt	1	1	AY.44	0.000006
E	71	P71H	cCt	cAt	1	1	AY.46	0.000104
E	71	P71R	cCt	cGt	1	1	AY.46.2	0.000635
E	71	P71L	cCt	cTt	1	1	AY.46.2	0.000635
E	71	P71L	cCt	cTt	1	1	AY.46.3	0.000934
E	71	P71L	cCt	cTt	1	1	AY.46.5	0.000198
E	71	P71del	CCT	---	1	1	AY.46.6	0.000072
E	71	P71H	cCt	cAt	1	1	AY.5.3	0.000337
E	71	P71L	cCt	cTt	1	1	AY.5.4	0.000277
E	71	P71P	ccT	ccA	1	1	AY.5.4	0.000277
E	71	P71R	cCt	cGt	1	1	AY.51	0.000909
E	71	P71T	Cct	Act	1	1	AY.52	0.000814
E	71	P71L	cCt	cTt	1	1	AY.52	0.000814
E	71	P71H	cCt	cAt	1	1	AY.53	0.000288
E	71	P71del	CCT	---	1	1	AY.54	0.000095
E	71	P71L	cCt	cTt	1	1	AY.54	0.000095
E	71	P71P	ccT	ccA	1	1	AY.55	0.000917
E	71	P71R	cCt	cGt	1	1	AY.55	0.000917
E	71	P71S	Cct	Tct	1	1	AY.55	0.000917
E	71	P71R	cCt	cGt	1	1	AY.59	0.00053
E	71	P71L	cCt	cTt	1	1	AY.6	0.000041
E	71	P71H	cCt	cAt	1	1	AY.61	0.000105
E	71	P71R	cCt	cGt	1	1	AY.61	0.000105
E	71	P71P	ccT	ccA	1	1	AY.61	0.000105
E	71	P71L	cCt	cTt	1	1	AY.62	0.000436
E	71	P71L	cCt	cTt	1	1	AY.63	0.000387
E	71	P71S	Cct	Tct	1	1	AY.65	0.000533
E	71	P71del	CCT	---	1	1	AY.68	0.000274
E	71	P71H	cCt	cAt	1	1	AY.68	0.000274
E	71	P71S	Cct	Tct	1	1	AY.7	0.000196
E	71	P71del	CCT	---	1	1	AY.7.1	0.000113
E	71	P71S	Cct	Tct	1	1	AY.7.1	0.000113
E	71	P71R	cCt	cGt	1	1	AY.7.2	0.000559
E	71	P71T	Cct	Act	1	1	AY.70	0.000209
E	71	P71L	cCt	cTt	1	1	AY.73	0.000665
E	71	P71L	cCt	cTt	1	1	AY.74	0.000116
E	71	P71R	cCt	cGt	1	1	AY.74	0.000116
E	71	P71R	cCt	cGt	1	1	AY.75	0.000056
E	71	P71L	cCt	cTt	1	1	AY.75.1	0.00018
E	71	P71S	Cct	Tct	1	1	AY.84	0.000437
E	71	P71S	Cct	Tct	1	1	AY.85	0.000427
E	71	P71S	Cct	Tct	1	1	AY.9	0.000068
E	71	P71L	cCt	cTt	1	1	AY.9.1	0.000084
E	71	P71S	Cct	Tct	1	1	AY.90	0.000684
E	71	P71S	Cct	Tct	1	1	AY.92	0.000287
E	71	P71del	CCT	---	1	1	AY.95	0.000761
E	71	P71L	cCt	cTt	1	1	AY.96	0.002075
E	71	P71H	cCt	cAt	1	1	AY.98	0.000079
E	71	P71R	cCt	cGt	1	1	AY.98	0.000079
E	71	P71R	cCt	cGt	1	1	AY.99.2	0.000092
E	71	P71S	Cct	Tct	1	1	AY.99.2	0.000092
E	71	P71L	cCt	cTt	1	1	AZ.1	0.000867
E	71	P71del	CCT	---	1	1	B	0.000128
E	71	P71del1	Cct	-ct	1	1	B.1	0.000009
E	71	P71A	Cct	Gct	1	1	B.1.1	0.000018
E	71	P71F	CCt	TTt	1	1	B.1.1	0.000018
E	71	P71R	cCt	cGt	1	1	B.1.1	0.000018
E	71	P71P	ccT	ccC	1	1	B.1.1	0.000018
E	71	P71H	cCt	cAt	1	1	B.1.1	0.000018
E	71	P71L	cCt	cTt	1	1	B.1.1.134	0.011364
E	71	P71L	cCt	cTt	1	1	B.1.1.141	0.002012
E	71	P71L	cCt	cTt	1	1	B.1.1.148	0.008772
E	71	P71L	cCt	cTt	1	1	B.1.1.157	0.000913
E	71	P71H	cCt	cAt	1	1	B.1.1.170	0.001247
E	71	P71L	cCt	cTt	1	1	B.1.1.189	0.001513
E	71	P71L	cCt	cTt	1	1	B.1.1.192	0.002309
E	71	P71L	cCt	cTt	1	1	B.1.1.198	0.001468
E	71	P71L	cCt	cTt	1	1	B.1.1.207	0.001182
E	71	P71L	cCt	cTt	1	1	B.1.1.216	0.00089
E	71	P71L	cCt	cTt	1	1	B.1.1.222	0.000204
E	71	P71P	ccT	ccC	1	1	B.1.1.222	0.000204
E	71	P71S	Cct	Tct	1	1	B.1.1.226	0.005814
E	71	P71S	Cct	Tct	1	1	B.1.1.234	0.012048
E	71	P71V	CCT	GTA	1	1	B.1.1.241	0.00207
E	71	P71L	cCt	cTt	1	1	B.1.1.253	0.002506
E	71	P71S	Cct	Tct	1	1	B.1.1.255	0.00303
E	71	P71L	cCt	cTt	1	1	B.1.1.257	0.009709
E	71	P71S	Cct	Tct	1	1	B.1.1.28	0.000311
E	71	P71S	Cct	Tct	1	1	B.1.1.291	0.000742
E	71	P71S	Cct	Tct	1	1	B.1.1.294	0.001266
E	71	P71L	cCt	cTt	1	1	B.1.1.308	0.011765
E	71	P71L	cCt	cTt	1	1	B.1.1.315	0.008475
E	71	P71S	Cct	Tct	1	1	B.1.1.317	0.000412
E	71	P71L	cCt	cTt	1	1	B.1.1.33	0.000421
E	71	P71R	cCt	cGt	1	1	B.1.1.33	0.000421
E	71	P71R	cCt	cGt	1	1	B.1.1.349	0.010309
E	71	P71L	cCt	cTt	1	1	B.1.1.354	0.004386
E	71	P71L	cCt	cTt	1	1	B.1.1.369	0.000446
E	71	P71P	ccT	ccC	1	1	B.1.1.369	0.000446
E	71	P71L	cCt	cTt	1	1	B.1.1.370	0.012658
E	71	P71L	cCt	cTt	1	1	B.1.1.375	0.011905
E	71	P71L	cCt	cTt	1	1	B.1.1.389	0.006061
E	71	P71S	Cct	Tct	1	1	B.1.1.448	0.002033
E	71	P71L	cCt	cTt	1	1	B.1.1.462	0.008621
E	71	P71L	cCt	cTt	1	1	B.1.1.464	0.001473
E	71	P71L	cCt	cTt	1	1	B.1.1.485	0.016667
E	71	P71H	cCt	cAt	1	1	B.1.1.519	0.00004
E	71	P71del1	Cct	-ct	1	1	B.1.1.7	0.000001
E	71	P71H	cCt	cAt	1	1	B.1.1.71	0.006061
E	71	P71L	cCt	cTt	1	1	B.1.1.77	0.041667
E	71	P71L	cCt	cTt	1	1	B.1.110	0.004525
E	71	P71L	cCt	cTt	1	1	B.1.110.3	0.000718
E	71	P71L	cCt	cTt	1	1	B.1.126	0.001276
E	71	P71L	cCt	cTt	1	1	B.1.128	0.000635
E	71	P71L	cCt	cTt	1	1	B.1.147	0.000756
E	71	P71L	cCt	cTt	1	1	B.1.157	0.002985
E	71	P71T	Cct	Act	1	1	B.1.160	0.000031
E	71	P71L	cCt	cTt	1	1	B.1.160.14	0.002119
E	71	P71L	cCt	cTt	1	1	B.1.160.32	0.004292
E	71	P71H	cCt	cAt	1	1	B.1.177	0.000013
E	71	P71del1	ccT	cc-	1	1	B.1.177	0.000013
E	71	P71L	cCt	cTt	1	1	B.1.177.30	0.002513
E	71	P71L	cCt	cTt	1	1	B.1.177.4	0.000211
E	71	P71L	cCt	cTt	1	1	B.1.177.40	0.005155
E	71	P71L	cCt	cTt	1	1	B.1.177.45	0.000381
E	71	P71S	Cct	Tct	1	1	B.1.177.46	0.000918
E	71	P71L	cCt	cTt	1	1	B.1.177.6	0.000977
E	71	P71S	Cct	Tct	1	1	B.1.177.65	0.000665
E	71	P71L	cCt	cTt	1	1	B.1.177.70	0.005917
E	71	P71L	cCt	cTt	1	1	B.1.177.72	0.00339
E	71	P71S	Cct	Tct	1	1	B.1.177.82	0.000477
E	71	P71H	cCt	cAt	1	1	B.1.177.86	0.000183
E	71	P71L	cCt	cTt	1	1	B.1.177.87	0.000728
E	71	P71L	cCt	cTt	1	1	B.1.205	0.02381
E	71	P71del	CCT	---	1	1	B.1.218	0.005155
E	71	P71L	cCt	cTt	1	1	B.1.218	0.005155
E	71	P71P	ccT	ccC	1	1	B.1.221	0.000071
E	71	P71F	CCT	TTC	1	1	B.1.221	0.000071
E	71	P71S	Cct	Tct	1	1	B.1.232	0.000537
E	71	P71L	cCt	cTt	1	1	B.1.232	0.000537
E	71	P71S	Cct	Tct	1	1	B.1.234	0.000132
E	71	P71P	ccT	ccC	1	1	B.1.234	0.000132
E	71	P71L	cCt	cTt	1	1	B.1.236	0.002053
E	71	P71L	cCt	cTt	1	1	B.1.237	0.004975
E	71	P71S	Cct	Tct	1	1	B.1.237	0.004975
E	71	P71Y	CCt	TAt	1	1	B.1.243	0.00007
E	71	P71S	Cct	Tct	1	1	B.1.258	0.000067
E	71	P71L	cCt	cTt	1	1	B.1.258.11	0.000396
E	71	P71S	Cct	Tct	1	1	B.1.258.22	0.002667
E	71	P71L	cCt	cTt	1	1	B.1.258.3	0.001675
E	71	P71L	cCt	cTt	1	1	B.1.258.9	0.005
E	71	P71L	cCt	cTt	1	1	B.1.260	0.003344
E	71	P71L	cCt	cTt	1	1	B.1.289	0.00266
E	71	P71H	cCt	cAt	1	1	B.1.3	0.002618
E	71	P71S	Cct	Tct	1	1	B.1.311	0.000275
E	71	P71L	cCt	cTt	1	1	B.1.320	0.001245
E	71	P71L	cCt	cTt	1	1	B.1.335	0.010309
E	71	P71S	Cct	Tct	1	1	B.1.340	0.004292
E	71	P71S	Cct	Tct	1	1	B.1.344	0.008197
E	71	P71S	Cct	Tct	1	1	B.1.350	0.002933
E	71	P71S	Cct	Tct	1	1	B.1.351	0.00003
E	71	P71P	ccT	ccC	1	1	B.1.356	0.001727
E	71	P71del	CCT	---	1	1	B.1.36	0.000146
E	71	P71L	cCt	cTt	1	1	B.1.36.10	0.004785
E	71	P71L	cCt	cTt	1	1	B.1.36.18	0.00042
E	71	P71S	Cct	Tct	1	1	B.1.36.18	0.00042
E	71	P71L	cCt	cTt	1	1	B.1.36.19	0.009259
E	71	P71L	cCt	cTt	1	1	B.1.36.2	0.010753
E	71	P71L	cCt	cTt	1	1	B.1.36.27	0.000763
E	71	P71S	Cct	Tct	1	1	B.1.36.31	0.001751
E	71	P71L	cCt	cTt	1	1	B.1.36.39	0.002217
E	71	P71L	cCt	cTt	1	1	B.1.361	0.001289
E	71	P71L	cCt	cTt	1	1	B.1.362	0.001541
E	71	P71V	CCT	GTA	1	1	B.1.367	0.000792
E	71	P71L	cCt	cTt	1	1	B.1.369	0.000285
E	71	P71L	cCt	cTt	1	1	B.1.381	0.007812
E	71	P71L	cCt	cTt	1	1	B.1.390	0.010638
E	71	P71L	cCt	cTt	1	1	B.1.391	0.001127
E	71	P71L	cCt	cTt	1	1	B.1.401	0.008197
E	71	P71H	cCt	cAt	1	1	B.1.420	0.010417
E	71	P71L	cCt	cTt	1	1	B.1.421	0.007463
E	71	P71L	cCt	cTt	1	1	B.1.426	0.001009
E	71	P71R	cCt	cGt	1	1	B.1.428	0.00102
E	71	P71L	cCt	cTt	1	1	B.1.459	0.004082
E	71	P71H	cCt	cAt	1	1	B.1.459	0.004082
E	71	P71L	cCt	cTt	1	1	B.1.466.2	0.000391
E	71	P71L	cCt	cTt	1	1	B.1.480	0.002488
E	71	P71R	cCt	cGt	1	1	B.1.525	0.000113
E	71	P71S	Cct	Tct	1	1	B.1.525	0.000113
E	71	P71del	CCT	---	1	1	B.1.526	0.000024
E	71	P71H	cCt	cAt	1	1	B.1.526	0.000024
E	71	P71L	cCt	cTt	1	1	B.1.538	0.008065
E	71	P71S	Cct	Tct	1	1	B.1.564	0.000426
E	71	P71L	cCt	cTt	1	1	B.1.568	0.001111
E	71	P71S	Cct	Tct	1	1	B.1.571	0.009709
E	71	P71L	cCt	cTt	1	1	B.1.575	0.000303
E	71	P71S	Cct	Tct	1	1	B.1.580	0.004065
E	71	P71L	cCt	cTt	1	1	B.1.580	0.004065
E	71	P71S	Cct	Tct	1	1	B.1.582	0.000491
E	71	P71L	cCt	cTt	1	1	B.1.587	0.001898
E	71	P71F	CCt	TTt	1	1	B.1.596	0.000087
E	71	P71S	Cct	Tct	1	1	B.1.612	0.002653
E	71	P71L	cCt	cTt	1	1	B.1.615	0.04
E	71	P71del	CCT	---	1	1	B.1.617.1	0.000129
E	71	P71S	Cct	Tct	1	1	B.1.617.1	0.000129
E	71	P71F	CCt	TTt	1	1	B.1.617.2	0.000004
E	71	P71del1	Cct	-ct	1	1	B.1.617.3	0.002985
E	71	P71P	ccT	ccA	1	1	B.1.621	0.000089
E	71	P71R	cCt	cGt	1	1	B.1.621.1	0.000506
E	71	P71T	Cct	Act	1	1	B.1.623	0.000536
E	71	P71del	CCT	---	1	1	B.1.627	0.00202
E	71	P71P	ccT	ccA	1	1	B.1.627	0.00202
E	71	P71L	cCt	cTt	1	1	B.1.628	0.000352
E	71	P71A	Cct	Gct	1	1	B.1.637	0.000073
E	71	P71H	cCt	cAt	1	1	B.1.637	0.000073
E	71	P71del	CCT	---	1	1	B.1.638	0.052632
E	71	P71L	cCt	cTt	1	1	B.1.78	0.008547
E	71	P71L	cCt	cTt	1	1	B.39	0.002331
E	71	P71S	Cct	Tct	1	1	B.55	0.00295
E	71	P71L	cCt	cTt	1	1	C.1	0.002392
E	71	P71S	Cct	Tct	1	1	C.37	0.000116
E	71	P71del	CCT	---	1	1	C.37.1	0.002618
E	71	P71H	cCt	cAt	1	1	P.1	0.000016
E	71	P71P	ccT	ccA	1	1	P.1.1	0.000318
E	71	P71S	Cct	Tct	1	1	P.1.13	0.000898
E	71	P71del	CCT	---	1	1	P.1.13	0.000898
E	71	P71S	Cct	Tct	1	1	P.1.15	0.000232
E	71	P71del1	CcT	-cN	1	1	P.1.15	0.000232
E	71	P71S	Cct	Tct	1	1	P.1.17	0.000162
E	71	P71L	cCt	cTt	1	1	P.1.2	0.001156
E	71	P71del	CCT	---	1	1	P.1.7	0.000319
E	71	P71P	ccT	ccA	1	1	P.2	0.000187
E	71	P71L	cCt	cTt	1	1	P.3	0.001595
E	71	P71L	cCt	cTt	1	1	Q.1	0.000126
E	71	P71S	Cct	Tct	1	1	Q.3	0.000145
E	71	P71L	cCt	cTt	1	1	Q.4	0.000455
E	71	P71T	Cct	Act	1	1	Q.8	0.000165
E	71	P71S	Cct	Tct	1	1	R.1	0.00009
E	71	P71L	cCt	cTt	1	1	W.4	0.001351

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