CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 67

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E67S67FnonsyntCttTt4824810.99792526443-26445
E67S67FnonsyntCTtTC48210.0020746926443-26445
E67S67SsyntcTtcC2832410.8515926443-26445
E67S67SsyntcTtcG283280.098939926443-26445
E67S67SsyntcTtcA283140.0494726443-26445
E67S67PnonsynTctCct2102080.99047626443-26445
E67S67PnonsynTcTCcC21010.004761926443-26445
E67S67PnonsynTcTCcA21010.004761926443-26445
E67S67deldelTCT---7070126443-26445
E67S67YnonsyntCttAt2121126443-26445
E67S67AnonsynTctGct15140.93333326443-26445
E67S67AnonsynTcTGcA1510.066666726443-26445
E67S67CnonsyntCttGt1414126443-26445
E67S67LnonsynTCtCTt730.42857126443-26445
E67S67LnonsyntCTtTA720.28571426443-26445
E67S67LnonsynTCTCTC710.14285726443-26445
E67S67LnonsynTCTCTA710.14285726443-26445
E67S67TnonsynTctAct55126443-26445
E67S67NnonsynTCTAAC33126443-26445

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E67S67FtCttTt481482All0.000092
E67S67FtCTtTC1482All0
E67S67StcTtcC241283All0.000046
E67S67StcTtcG28283All0.000005
E67S67StcTtcA14283All0.000003
E67S67PTctCct208210All0.00004
E67S67PTcTCcA1210All0
E67S67PTcTCcC1210All0
E67S67PTctCct9191AY.40.000142
E67S67FtCttTt7777B.1.617.20.00029
E67S67FtCttTt7272B.1.6280.02537
E67S67delTCT---7070All0.000013
E67S67StcTtcC6267AY.40.000096
E67S67StcTtcG467AY.40.000006
E67S67StcTtcA167AY.40.000002
E67S67FtCttTt5454AY.440.000329
E67S67FtCttTt5353AY.430.000235
E67S67FtCttTt4242B.1.2430.002923
E67S67StcTtcC3840B.1.617.20.000143
E67S67StcTtcG140B.1.617.20.000004
E67S67StcTtcA140B.1.617.20.000004
E67S67FtCttTt3939B.1.1.70.000035
E67S67PTctCct3838AY.98.10.00184
E67S67StcTtcC2525AY.1000.00115
E67S67PTctCct2424B.1.177.661
E67S67YtCttAt2121All0.000004
E67S67ATctGct1415All0.000003
E67S67ATcTGcA115All0
E67S67FtCttTt1515B.1.20.000132
E67S67CtCttGt1414All0.000003
E67S67StcTtcC1114B.1.1.70.00001
E67S67StcTtcA214B.1.1.70.000002
E67S67StcTtcG114B.1.1.70.000001
E67S67StcTtcC1313AY.30.000129
E67S67delTCT---1313B.1.1.70.000012
E67S67FtCttTt1313B.1.177.90.01731
E67S67FtCttTt1212AY.260.00034
E67S67PTctCct1212AY.260.00034
E67S67FtCttTt1011B.10.000092
E67S67FtCTtTC111B.10.000009
E67S67StcTtcG610B.10.000055
E67S67StcTtcC410B.10.000037
E67S67delTCT---99B.10.000082
E67S67delTCT---99P.10.000142
E67S67PTctCct88AY.4.50.00086
E67S67StcTtcC48B.1.20.000035
E67S67StcTtcG38B.1.20.000026
E67S67StcTtcA18B.1.20.000009
E67S67LTCtCTt37All0.000001
E67S67LtCTtTA27All0
E67S67LTCTCTA17All0
E67S67LTCTCTC17All0
E67S67YtCttAt77AY.40.000011
E67S67StcTtcC67B.1.10.000109
E67S67StcTtcA17B.1.10.000018
E67S67StcTtcC77B.1.360.001021
E67S67FtCttTt77P.10.00011
E67S67StcTtcC66AY.1020.000159
E67S67FtCttTt66AY.30.00006
E67S67delTCT---66P.1.150.001394
E67S67TTctAct55All0.000001
E67S67FtCttTt55AY.1030.000031
E67S67PTctCct55B.1.1.70.000004
E67S67StcTtcC55B.1.1600.000156
E67S67StcTtcC55P.10.000079
E67S67FtCttTt44AY.40.000006
E67S67FtCttTt44AY.5.30.00135
E67S67FtCttTt44B.1.1110.0047
E67S67FtCttTt44B.1.2340.000528
E67S67FtCttTt44B.1.3820.035714
E67S67LTCtCTt130.055556
E67S67LTCTCTA130.055556
E67S67LtCTtTA130.055556
E67S67NTCTAAC33All0.000001
E67S67StcTtcC33AY.1060.001005
E67S67CtCttGt33AY.1130.000427
E67S67StcTtcC33AY.3.10.000256
E67S67PTctCct33AY.3.10.000256
E67S67StcTtcC33AY.420.000121
E67S67FtCttTt33B.1.1.250.001706
E67S67StcTtcG23B.1.2210.000142
E67S67StcTtcA13B.1.2210.000071
E67S67FtCttTt33B.1.2580.0002
E67S67StcTtcC23B.1.4290.000047
E67S67StcTtcG13B.1.4290.000024
E67S67StcTtcG33B.1.5230.007353
E67S67ATctGct33B.1.617.20.000011
E67S67delTCT---33B.1.6210.000266
E67S67StcTtcC33C.370.000348
E67S67delTCT---33C.370.000348
E67S67NTCTAAC220.111111
E67S67FtCttTt220.111111
E67S67delTCT---220.111111
E67S67PTcTCcA120.055556
E67S67PTctCct120.055556
E67S67CtCttGt22AY.1000.000092
E67S67StcTtcC22AY.1010.000981
E67S67StcTtcA12AY.1030.000006
E67S67StcTtcC12AY.1030.000006
E67S67StcTtcC22AY.1160.000574
E67S67FtCttTt22AY.1200.000074
E67S67TTctAct22AY.230.000139
E67S67delTCT---22AY.250.000012
E67S67PTctCct22AY.250.000012
E67S67CtCttGt22AY.260.000057
E67S67StcTtcC22AY.330.000134
E67S67delTCT---22AY.40.000003
E67S67StcTtcC22AY.4.50.000215
E67S67StcTtcG22AY.430.000009
E67S67StcTtcA22AY.470.000062
E67S67StcTtcA22AY.70.000392
E67S67ATctGct22AY.740.000231
E67S67StcTtcC22AY.810.003984
E67S67FtCttTt22AY.9.20.000073
E67S67StcTtcC22B0.000256
E67S67YtCttAt22B.10.000018
E67S67LTCtCTt12B.10.000009
E67S67LTCTCTC12B.10.000009
E67S67PTctCct12B.10.000009
E67S67PTcTCcC12B.10.000009
E67S67FtCttTt22B.1.10.000036
E67S67FtCttTt22B.1.1.2160.001781
E67S67FtCttTt22B.1.1.2840.000215
E67S67StcTtcC22B.1.1.3470.036364
E67S67StcTtcG12B.1.1.5190.00004
E67S67StcTtcC12B.1.1.5190.00004
E67S67StcTtcC22B.1.1.570.022989
E67S67YtCttAt22B.1.1.70.000002
E67S67ATcTGcA12B.1.1.70.000001
E67S67ATctGct12B.1.1.70.000001
E67S67FtCttTt22B.1.1600.000062
E67S67PTctCct22B.1.1770.000026
E67S67StcTtcC22B.1.1770.000026
E67S67PTctCct22B.1.20.000018
E67S67StcTtcC22B.1.3510.000059
E67S67CtCttGt22B.1.5250.000226
E67S67FtCttTt22B.1.5260.000047
E67S67PTctCct22B.1.617.20.000008
E67S67PTctCct22P.1.17.10.00175
E67S67StcTtcA110.055556
E67S67FtCttTt11A.2.40.003367
E67S67TTctAct11A.2.40.003367
E67S67PTctCct11AY.1000.000046
E67S67YtCttAt11AY.1000.000046
E67S67FtCttTt11AY.1020.000027
E67S67PTctCct11AY.1030.000006
E67S67CtCttGt11AY.1030.000006
E67S67ATctGct11AY.1060.000335
E67S67delTCT---11AY.1080.001103
E67S67FtCttTt11AY.1170.000085
E67S67PTctCct11AY.1170.000085
E67S67delTCT---11AY.1180.000063
E67S67ATctGct11AY.1200.000037
E67S67PTctCct11AY.1200.000037
E67S67delTCT---11AY.1200.000037
E67S67FtCttTt11AY.200.000039
E67S67YtCttAt11AY.200.000039
E67S67StcTtcC11AY.200.000039
E67S67StcTtcC11AY.230.00007
E67S67PTctCct11AY.230.00007
E67S67StcTtcG11AY.250.000006
E67S67delTCT---11AY.260.000028
E67S67StcTtcC11AY.260.000028
E67S67StcTtcC11AY.290.000016
E67S67PTctCct11AY.30.00001
E67S67FtCttTt11AY.300.000396
E67S67FtCttTt11AY.330.000067
E67S67FtCttTt11AY.370.000316
E67S67delTCT---11AY.390.000025
E67S67StcTtcC11AY.390.000025
E67S67FtCttTt11AY.390.000025
E67S67PTctCct11AY.4.20.000022
E67S67FtCttTt11AY.4.20.000022
E67S67StcTtcC11AY.4.40.000409
E67S67YtCttAt11AY.4.50.000107
E67S67ATctGct11AY.420.00004
E67S67delTCT---11AY.430.000004
E67S67ATctGct11AY.430.000004
E67S67YtCttAt11AY.430.000004
E67S67LtCTtTA11AY.440.000006
E67S67CtCttGt11AY.440.000006
E67S67FtCttTt11AY.450.000122
E67S67StcTtcA11AY.450.000122
E67S67StcTtcC11AY.460.000104
E67S67FtCttTt11AY.460.000104
E67S67FtCttTt11AY.470.000031
E67S67delTCT---11AY.50.000021
E67S67delTCT---11AY.540.000095
E67S67FtCttTt11AY.590.00053
E67S67FtCttTt11AY.60.000041
E67S67FtCttTt11AY.610.000105
E67S67delTCT---11AY.680.000274
E67S67FtCttTt11AY.750.000056
E67S67TTctAct11AY.850.000427
E67S67StcTtcC11AY.9.20.000037
E67S67StcTtcC11AY.920.000287
E67S67delTCT---11AY.950.000761
E67S67YtCttAt11AY.960.002075
E67S67FtCttTt11AY.980.000079
E67S67StcTtcC11AY.98.10.000048
E67S67PTctCct11AY.99.20.000092
E67S67PTctCct11B0.000128
E67S67delTCT---11B0.000128
E67S67NTCTAAC11B.1.10.000018
E67S67ATctGct11B.1.1.1480.008772
E67S67FtCttTt11B.1.1.1890.001513
E67S67FtCttTt11B.1.1.3480.000796
E67S67StcTtcC11B.1.1.3960.045455
E67S67FtCttTt11B.1.1.4090.002833
E67S67StcTtcC11B.1.1.4090.002833
E67S67FtCttTt11B.1.1.5190.00004
E67S67FtCttTt11B.1.1.630.000386
E67S67LTCtCTt11B.1.1.70.000001
E67S67CtCttGt11B.1.1.70.000001
E67S67TTctAct11B.1.1.70.000001
E67S67FtCttTt11B.1.1.830.00271
E67S67StcTtcG11B.1.1310.008772
E67S67FtCttTt11B.1.1770.000013
E67S67YtCttAt11B.1.1770.000013
E67S67CtCttGt11B.1.1770.000013
E67S67PTctCct11B.1.177.120.000152
E67S67FtCttTt11B.1.177.430.001477
E67S67StcTtcG11B.1.177.440.000519
E67S67delTCT---11B.1.177.520.001757
E67S67StcTtcC11B.1.177.650.000665
E67S67ATctGct11B.1.20.000009
E67S67YtCttAt11B.1.20.000009
E67S67delTCT---11B.1.2180.005155
E67S67FtCttTt11B.1.2210.000071
E67S67StcTtcC11B.1.2430.00007
E67S67FtCttTt11B.1.2980.002114
E67S67delTCT---11B.1.360.000146
E67S67FtCttTt11B.1.36.390.002217
E67S67YtCttAt11B.1.36.80.001
E67S67FtCttTt11B.1.3610.001289
E67S67PTctCct11B.1.3890.001002
E67S67StcTtcC11B.1.3960.000706
E67S67ATctGct11B.1.4000.000429
E67S67PTctCct11B.1.4530.003236
E67S67StcTtcC11B.1.4560.003268
E67S67FtCttTt11B.1.5250.000113
E67S67StcTtcC11B.1.5260.000024
E67S67StcTtcC11B.1.5750.000303
E67S67PTctCct11B.1.5950.000261
E67S67StcTtcG11B.1.5960.000087
E67S67delTCT---11B.1.617.10.000129
E67S67YtCttAt11B.1.617.20.000004
E67S67FtCttTt11B.1.6210.000089
E67S67delTCT---11B.1.6270.00202
E67S67ATctGct11B.1.6280.000352
E67S67CtCttGt11B.1.6370.000073
E67S67delTCT---11B.1.6380.052632
E67S67YtCttAt11B.60.00091
E67S67FtCttTt11C.300.001727
E67S67delTCT---11C.37.10.002618
E67S67StcTtcC11D.20.000075
E67S67FtCttTt11D.20.000075
E67S67PTctCct11D.20.000075
E67S67PTctCct11P.10.000016
E67S67delTCT---11P.1.130.000898
E67S67FtCttTt11P.1.170.000162
E67S67delTCT---11P.1.70.000319
E67S67delTCT---11Q.80.000165