CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 65

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E65L65LsynctGctT322525920.80372126437-26439
E65L65LsynCtgTtg32253940.12217126437-26439
E65L65LsynctGctA32252060.06387626437-26439
E65L65LsynctGctC3225320.0099224826437-26439
E65L65LsynCtGTtA322510.00031007826437-26439
E65L65deldelCTG---6666126437-26439
E65L65MnonsynCtgAtg5151126437-26439
E65L65PnonsyncTgcCg22180.81818226437-26439
E65L65PnonsyncTGcCA2230.13636426437-26439
E65L65PnonsyncTGcCT2210.045454526437-26439
E65L65QnonsyncTgcAg13120.92307726437-26439
E65L65QnonsyncTGcAA1310.076923126437-26439
E65L65RnonsyncTgcGg77126437-26439
E65L65VnonsynCtgGtg33126437-26439
E65L65del1delctGct-320.66666726437-26439
E65L65del1delcTgc-g310.33333326437-26439
E65L65XnonsynCTGTGA310.33333326437-26439
E65L65XnonsynCTGTAA310.33333326437-26439
E65L65XnonsynCTgTAg310.33333326437-26439
E65L65HnonsyncTGcAT210.526437-26439
E65L65HnonsyncTGcAC210.526437-26439
E65L65KnonsynCTGAAA210.526437-26439
E65L65KnonsynCTgAAg210.526437-26439
E65L65FnonsynCtGTtT11126437-26439
E65L65del2delcTGc--11126437-26439
E65L65InonsynCtGAtA11126437-26439

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E65L65LctGctT25923225All0.000496
E65L65LCtgTtg3943225All0.000075
E65L65LctGctA2063225All0.000039
E65L65LctGctC323225All0.000006
E65L65LCtGTtA13225All0
E65L65LctGctT344404AY.40.000535
E65L65LCtgTtg53404AY.40.000082
E65L65LctGctA5404AY.40.000008
E65L65LctGctC2404AY.40.000003
E65L65LctGctA136392B.1.1.70.000122
E65L65LctGctT135392B.1.1.70.000121
E65L65LCtgTtg120392B.1.1.70.000107
E65L65LctGctC1392B.1.1.70.000001
E65L65LctGctT312313AY.30.003103
E65L65LctGctC1313AY.30.00001
E65L65LctGctT296310B.1.617.20.001115
E65L65LCtgTtg8310B.1.617.20.00003
E65L65LctGctC3310B.1.617.20.000011
E65L65LctGctA3310B.1.617.20.000011
E65L65LctGctT285285AY.940.126162
E65L65LctGctT189201AY.440.00115
E65L65LCtgTtg6201AY.440.000037
E65L65LctGctA3201AY.440.000018
E65L65LctGctC3201AY.440.000018
E65L65LctGctT128133AY.430.000567
E65L65LCtgTtg4133AY.430.000018
E65L65LctGctA1133AY.430.000004
E65L65LctGctT7692AY.1030.000472
E65L65LCtgTtg1592AY.1030.000093
E65L65LctGctA192AY.1030.000006
E65L65LctGctT3881B.10.000348
E65L65LCtgTtg2381B.10.000211
E65L65LctGctA2081B.10.000183
E65L65delCTG---6666All0.000013
E65L65LctGctT4054B.1.1770.000527
E65L65LCtgTtg1454B.1.1770.000184
E65L65MCtgAtg5151All0.00001
E65L65LctGctT3842AY.390.000939
E65L65LCtgTtg342AY.390.000074
E65L65LctGctC142AY.390.000025
E65L65LctGctT2739AY.250.000162
E65L65LctGctA939AY.250.000054
E65L65LctGctC239AY.250.000012
E65L65LCtgTtg139AY.250.000006
E65L65LctGctT3939C.36.30.022121
E65L65LctGctT3636AY.1010.017656
E65L65LctGctT3136AY.540.002956
E65L65LCtgTtg536AY.540.000477
E65L65LctGctT1831B.1.20.000158
E65L65LCtgTtg931B.1.20.000079
E65L65LctGctC331B.1.20.000026
E65L65LctGctA131B.1.20.000009
E65L65LctGctT3031B.1.3510.000892
E65L65LCtgTtg131B.1.3510.00003
E65L65LctGctT1429AY.1200.000521
E65L65LCtgTtg1329AY.1200.000483
E65L65LctGctA229AY.1200.000074
E65L65LctGctT2429B.1.5260.000564
E65L65LCtgTtg329B.1.5260.000071
E65L65LctGctA229B.1.5260.000047
E65L65LctGctT2125AY.1020.000557
E65L65LCtgTtg325AY.1020.00008
E65L65LctGctA125AY.1020.000027
E65L65LctGctT2323B.1.2400.004958
E65L65PcTgcCg1822All0.000003
E65L65PcTGcCA322All0.000001
E65L65PcTGcCT122All0
E65L65MCtgAtg2222C.370.002553
E65L65LctGctT1521B.1.1.5190.000596
E65L65LCtgTtg521B.1.1.5190.000199
E65L65LctGctA121B.1.1.5190.00004
E65L65LctGctT1219P.10.000189
E65L65LCtgTtg419P.10.000063
E65L65LctGctA219P.10.000032
E65L65LctGctC119P.10.000016
E65L65LctGctT1517AY.1180.00094
E65L65LctGctA217AY.1180.000125
E65L65LctGctT1517AY.330.001002
E65L65LCtgTtg217AY.330.000134
E65L65LctGctT1717AY.4.20.000369
E65L65LctGctT1117AY.50.000227
E65L65LCtgTtg617AY.50.000124
E65L65LctGctT1316AY.260.000368
E65L65LCtgTtg316AY.260.000085
E65L65LctGctT1316AY.420.000523
E65L65LctGctC316AY.420.000121
E65L65LctGctT1416B.1.10.000254
E65L65LCtgTtg216B.1.10.000036
E65L65LctGctT1114AY.290.000174
E65L65LCtgTtg314AY.290.000047
E65L65QcTgcAg1213All0.000002
E65L65QcTGcAA113All0
E65L65LctGctT1313B.1.1.3690.005801
E65L65LctGctT1111B.1.1.370.002122
E65L65LCtgTtg1010AY.690.001867
E65L65LctGctT1010B.1.1.280.003112
E65L65LctGctT810B.1.5960.000697
E65L65LctGctA110B.1.5960.000087
E65L65LCtgTtg110B.1.5960.000087
E65L65delCTG---1010P.10.000158
E65L65LctGctT99AY.1190.000318
E65L65delCTG---99B.10.000082
E65L65LCtgTtg99B.1.1.2320.016334
E65L65LctGctT88B.1.177.70.001319
E65L65LctGctT68P.1.70.001916
E65L65LCtgTtg28P.1.70.000639
E65L65LctGctT470.222222
E65L65LctGctA170.055556
E65L65LCtGTtA170.055556
E65L65LCtgTtg170.055556
E65L65RcTgcGg77All0.000001
E65L65LctGctT67AY.460.000624
E65L65LCtgTtg17AY.460.000104
E65L65LctGctT77AY.46.60.000505
E65L65LctGctT77B.1.617.10.000903
E65L65LctGctT47C.370.000464
E65L65LCtgTtg37C.370.000348
E65L65LctGctT67P.1.140.000287
E65L65LCtgTtg17P.1.140.000048
E65L65LctGctT66AY.5.40.00166
E65L65LctGctT66AY.780.009245
E65L65LctGctT66AY.98.10.000291
E65L65delCTG---66P.1.150.001394
E65L65LCtgTtg55AY.1110.000916
E65L65LctGctT45AY.1210.000541
E65L65LCtgTtg15AY.1210.000135
E65L65LctGctT35AY.200.000117
E65L65LCtgTtg25AY.200.000078
E65L65LctGctT45AY.230.000279
E65L65LctGctA15AY.230.00007
E65L65MCtgAtg55B.1.1.70.000004
E65L65LctGctT45B.1.1.700.001364
E65L65LCtgTtg15B.1.1.700.000341
E65L65LctGctT55B.1.4800.012438
E65L65LCtgTtg55B.1.5770.003436
E65L65LCtgTtg55P.1.150.001162
E65L65PcTGcCA240.111111
E65L65PcTgcCg140.055556
E65L65PcTGcCT140.055556
E65L65LctGctT34AY.3.10.000256
E65L65LctGctC14AY.3.10.000085
E65L65LctGctT44AY.450.000487
E65L65LctGctT34AY.470.000093
E65L65LCtgTtg14AY.470.000031
E65L65LctGctT44AY.60.000165
E65L65LctGctT44AY.610.000419
E65L65LctGctT44AY.750.000224
E65L65LctGctT44AY.9.20.000147
E65L65MCtgAtg44B.10.000037
E65L65delCTG---44B.1.1.70.000004
E65L65LctGctC44B.1.5750.001214
E65L65LCtgTtg24B.1.6210.000177
E65L65LctGctT14B.1.6210.000089
E65L65LctGctC14B.1.6210.000089
E65L65LCtgTtg34Q.30.000435
E65L65LctGctT14Q.30.000145
E65L65LctGctT34R.10.00027
E65L65LctGctA14R.10.00009
E65L65LCtgTtg33A.270.004967
E65L65VCtgGtg33All0.000001
E65L65del1ctGct-23All0
E65L65XCTGTAA13All0
E65L65XCTgTAg13All0
E65L65del1cTgc-g13All0
E65L65XCTGTGA13All0
E65L65LctGctT33AM.40.010714
E65L65LctGctT33AY.1060.001005
E65L65LCtgTtg23AY.1090.001479
E65L65LctGctT13AY.1090.00074
E65L65LctGctT33AY.16.10.00141
E65L65QcTgcAg33AY.200.000117
E65L65delCTG---33AY.250.000018
E65L65LctGctT33AY.340.000291
E65L65LctGctT23AY.34.10.00102
E65L65LctGctA13AY.34.10.00051
E65L65LctGctT23AY.39.10.000079
E65L65LCtgTtg13AY.39.10.00004
E65L65QcTgcAg33AY.40.000005
E65L65LctGctT33AY.90.000203
E65L65LctGctT33B.1.1.3060.001315
E65L65LctGctC33B.1.1.4340.001046
E65L65RcTgcGg33B.1.1.70.000003
E65L65LctGctT33B.1.110.30.002155
E65L65MCtgAtg33B.1.20.000026
E65L65LCtgTtg33B.1.2580.0002
E65L65LCtgTtg23B.1.6090.000959
E65L65LctGctT13B.1.6090.000479
E65L65delCTG---33B.1.6210.000266
E65L65LctGctT33B.1.6370.000219
E65L65MCtgAtg33B.60.00273
E65L65delCTG---33C.370.000348
E65L65LctGctT33C.390.056604
E65L65LctGctA13D.20.000075
E65L65LctGctT13D.20.000075
E65L65LCtgTtg13D.20.000075
E65L65LctGctT33Q.20.00184
E65L65delCTG---220.111111
E65L65KCTgAAg120.055556
E65L65KCTGAAA120.055556
E65L65QcTGcAA120.055556
E65L65XCTGTAA120.055556
E65L65XCTgTAg120.055556
E65L65QcTgcAg120.055556
E65L65LctGctT12A.20.000662
E65L65LctGctA12A.20.000662
E65L65KCTGAAA12All0
E65L65KCTgAAg12All0
E65L65HcTGcAC12All0
E65L65HcTGcAT12All0
E65L65LctGctT12AY.1000.000046
E65L65LCtgTtg12AY.1000.000046
E65L65PcTgcCg22AY.1030.000012
E65L65RcTgcGg22AY.1030.000012
E65L65LctGctT22AY.1050.001286
E65L65LctGctT22AY.116.10.000623
E65L65LctGctT22AY.120.000632
E65L65delCTG---22AY.40.000003
E65L65MCtgAtg22AY.40.000003
E65L65PcTgcCg22AY.40.000003
E65L65LctGctT22AY.4.40.000818
E65L65delCTG---22AY.430.000009
E65L65MCtgAtg22AY.440.000012
E65L65delCTG---22AY.440.000012
E65L65LctGctC12AY.46.40.000165
E65L65LctGctT12AY.46.40.000165
E65L65LctGctT22AY.670.000929
E65L65LctGctT22AY.680.000547
E65L65LCtgTtg22AY.70.000392
E65L65LctGctT22AY.840.000875
E65L65LctGctT22AY.920.000575
E65L65LctGctT22AY.99.20.000184
E65L65LctGctT22B0.000256
E65L65LctGctT22B.1.1.2140.000111
E65L65LctGctT22B.1.1.2290.011494
E65L65LctGctT22B.1.1.4030.051282
E65L65QcTgcAg22B.1.1.70.000002
E65L65MCtgAtg22B.1.1770.000026
E65L65LctGctT22B.1.177.790.004684
E65L65PcTgcCg22B.1.20.000018
E65L65LctGctT22B.1.351.20.000605
E65L65LctGctT22B.1.4560.006536
E65L65LctGctA12B.1.5950.000261
E65L65LctGctT12B.1.5950.000261
E65L65LctGctA22B.1.6180.008065
E65L65MCtgAtg22C.37.10.005236
E65L65LctGctT12P.20.000187
E65L65LCtgTtg12P.20.000187
E65L65ICtGAtA110.055556
E65L65MCtgAtg110.055556
E65L65LctGctT11A0.000387
E65L65LctGctA11A.23.10.000704
E65L65LctGctT11AD.20.000219
E65L65ICtGAtA11All0
E65L65FCtGTtT11All0
E65L65del2cTGc--11All0
E65L65LCtgTtg11AY.1070.000466
E65L65delCTG---11AY.1080.001103
E65L65LctGctA11AY.1130.000142
E65L65LctGctT11AY.1160.000287
E65L65delCTG---11AY.1180.000063
E65L65delCTG---11AY.1200.000037
E65L65LctGctT11AY.120.10.000321
E65L65LctGctT11AY.120.2.10.000498
E65L65LctGctT11AY.130.000161
E65L65LCtgTtg11AY.140.000088
E65L65LctGctT11AY.170.008197
E65L65delCTG---11AY.230.00007
E65L65delCTG---11AY.260.000028
E65L65del2cTGc--11AY.30.00001
E65L65PcTgcCg11AY.30.00001
E65L65LctGctT11AY.320.000532
E65L65LctGctT11AY.350.000233
E65L65LctGctT11AY.360.000148
E65L65LctGctT11AY.370.000316
E65L65delCTG---11AY.390.000025
E65L65VCtgGtg11AY.40.000002
E65L65LCtgTtg11AY.4.2.10.000149
E65L65MCtgAtg11AY.4.50.000107
E65L65LctGctT11AY.4.50.000107
E65L65LctGctT11AY.410.000294
E65L65del1ctGct-11AY.440.000006
E65L65HcTGcAC11AY.440.000006
E65L65LctGctT11AY.46.20.000635
E65L65LctGctT11AY.46.30.000934
E65L65QcTgcAg11AY.470.000031
E65L65LctGctT11AY.520.000814
E65L65delCTG---11AY.540.000095
E65L65LCtgTtg11AY.550.000917
E65L65LctGctT11AY.560.001605
E65L65LctGctT11AY.570.000656
E65L65LctGctT11AY.580.000907
E65L65RcTgcGg11AY.60.000041
E65L65LCtgTtg11AY.620.000436
E65L65LctGctA11AY.630.000387
E65L65delCTG---11AY.680.000274
E65L65LctGctT11AY.7.10.000113
E65L65PcTgcCg11AY.7.10.000113
E65L65LctGctT11AY.730.000665
E65L65delCTG---11AY.75.10.00018
E65L65PcTgcCg11AY.790.001211
E65L65LctGctT11AY.820.001357
E65L65LctGctA11AY.850.000427
E65L65LctGctT11AY.860.00083
E65L65LctGctT11AY.870.000833
E65L65LctGctT11AY.880.000884
E65L65LctGctT11AY.900.000684
E65L65delCTG---11AY.950.000761
E65L65LctGctT11AY.980.000079
E65L65PcTgcCg11AY.98.10.000048
E65L65delCTG---11B0.000128
E65L65del1ctGct-11B0.000128
E65L65QcTgcAg11B.10.000009
E65L65del1cTgc-g11B.10.000009
E65L65PcTgcCg11B.10.000009
E65L65FCtGTtT11B.10.000009
E65L65HcTGcAT11B.10.000009
E65L65PcTGcCA11B.1.10.000018
E65L65LctGctA11B.1.1.10.000327
E65L65LctGctT11B.1.1.1010.01
E65L65LctGctT11B.1.1.1610.003534
E65L65LctGctT11B.1.1.1760.000439
E65L65LctGctT11B.1.1.2160.00089
E65L65LctGctA11B.1.1.2220.000204
E65L65LctGctT11B.1.1.2800.003086
E65L65LctGctT11B.1.1.2840.000107
E65L65LctGctT11B.1.1.330.000421
E65L65LctGctT11B.1.1.3480.000796
E65L65LCtgTtg11B.1.1.3590.027778
E65L65LctGctT11B.1.1.3670.055556
E65L65LctGctT11B.1.1.3700.012658
E65L65LctGctT11B.1.1.3890.006061
E65L65LctGctT11B.1.1.40.002976
E65L65LCtgTtg11B.1.1.4420.018519
E65L65LctGctC11B.1.1.5260.003546
E65L65PcTgcCg11B.1.1.70.000001
E65L65XCTGTGA11B.1.1.70.000001
E65L65LCtgTtg11B.1.1.990.02381
E65L65LctGctT11B.1.1030.019231
E65L65LCtgTtg11B.1.1370.5
E65L65LctGctT11B.1.1470.000756
E65L65PcTgcCg11B.1.1600.000031
E65L65PcTgcCg11B.1.177.120.000152
E65L65LctGctT11B.1.177.320.00135
E65L65LCtgTtg11B.1.177.460.000918
E65L65LctGctT11B.1.177.540.000606
E65L65LctGctT11B.1.177.850.005435
E65L65LCtgTtg11B.1.1890.004292
E65L65VCtgGtg11B.1.20.000009
E65L65LctGctT11B.1.214.20.0006
E65L65delCTG---11B.1.2180.005155
E65L65LctGctT11B.1.220.001318
E65L65LctGctT11B.1.2210.000071
E65L65LctGctT11B.1.2320.000537
E65L65LCtgTtg11B.1.2430.00007
E65L65LctGctT11B.1.2650.001271
E65L65LctGctT11B.1.3010.005917
E65L65LctGctT11B.1.3110.000275
E65L65LCtgTtg11B.1.3200.001245
E65L65LctGctT11B.1.3250.006897
E65L65PcTgcCg11B.1.3350.010309
E65L65LctGctT11B.1.3480.018182
E65L65QcTgcAg11B.1.3510.00003
E65L65delCTG---11B.1.360.000146
E65L65LctGctC11B.1.36.290.000517
E65L65LctGctT11B.1.3620.001541
E65L65LctGctT11B.1.3690.000285
E65L65LCtgTtg11B.1.3980.002976
E65L65LctGctT11B.1.4000.000429
E65L65LCtgTtg11B.1.4130.004255
E65L65LctGctT11B.1.4280.00102
E65L65LctGctT11B.1.4700.001404
E65L65LctGctT11B.1.4920.007042
E65L65LCtgTtg11B.1.5170.000427
E65L65LctGctT11B.1.5200.021739
E65L65LctGctT11B.1.5210.004975
E65L65LctGctT11B.1.5250.000113
E65L65MCtgAtg11B.1.5260.000024
E65L65LCtgTtg11B.1.5980.016949
E65L65LCtgTtg11B.1.6120.002653
E65L65delCTG---11B.1.617.10.000129
E65L65VCtgGtg11B.1.617.20.000004
E65L65MCtgAtg11B.1.617.20.000004
E65L65PcTgcCg11B.1.617.20.000004
E65L65MCtgAtg11B.1.6210.000089
E65L65LctGctT11B.1.6230.000536
E65L65delCTG---11B.1.6270.00202
E65L65delCTG---11B.1.6380.052632
E65L65LctGctT11B.550.00295
E65L65LctGctT11C.1.20.004255
E65L65LCtgTtg11C.2.10.006667
E65L65LctGctT11C.260.007353
E65L65delCTG---11C.37.10.002618
E65L65LctGctT11C.37.10.002618
E65L65LctGctT11N.50.001767
E65L65MCtgAtg11P.10.000016
E65L65PcTgcCg11P.10.000016
E65L65LctGctA11P.1.100.000269
E65L65delCTG---11P.1.130.000898
E65L65LctGctT11P.1.130.000898
E65L65LctGctT11P.1.170.000162
E65L65delCTG---11P.1.70.000319
E65L65RcTgcGg11Q.30.000145
E65L65delCTG---11Q.80.000165