CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 62

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E62V62FnonsynGttTtt11354113530.99991226428-26430
E62V62FnonsynGtTTtC1135410.000088074726428-26430
E62V62VsyngtTgtC1391240.89208626428-26430
E62V62VsyngtTgtA139140.10071926428-26430
E62V62VsyngtTgtG13910.0071942426428-26430
E62V62InonsynGttAtt133133126428-26430
E62V62LnonsynGttCtt1111100.99099126428-26430
E62V62LnonsynGtTTtG11110.0090090126428-26430
E62V62deldelGTT---6767126428-26430
E62V62AnonsyngTtgCt14120.85714326428-26430
E62V62AnonsyngTTgCC1420.14285726428-26430
E62V62GnonsyngTtgGt420.526428-26430
E62V62GnonsyngTTgGC410.2526428-26430
E62V62GnonsyngTTgGG410.2526428-26430
E62V62del1delGtt-tt33126428-26430
E62V62HnonsynGTTCAC22126428-26430
E62V62CnonsynGTTTGC210.526428-26430
E62V62CnonsynGTtTGt210.526428-26430
E62V62SnonsynGTtTCt11126428-26430
E62V62DnonsyngTtgAt11126428-26430
E62V62WnonsynGTTTGG11126428-26430

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E62V62FGttTtt1135311354All0.002171
E62V62FGtTTtC111354All0
E62V62FGttTtt21492149AY.850.917984
E62V62FGttTtt19881988B.1.617.20.007486
E62V62FGttTtt12681268B.1.1.70.001135
E62V62FGttTtt739739AY.520.601792
E62V62FGttTtt682682AY.440.004151
E62V62FGttTtt574574AY.430.002543
E62V62FGttTtt476476AY.40.000741
E62V62FGttTtt329329AY.1030.002043
E62V62FGttTtt220220AY.90.014871
E62V62FGttTtt183183B.1.1600.005707
E62V62FGttTtt152152AY.1020.00403
E62V62VgtTgtC124139All0.000024
E62V62VgtTgtA14139All0.000003
E62V62VgtTgtG1139All0
E62V62IGttAtt133133All0.000025
E62V62FGttTtt123123AY.1190.004343
E62V62FGttTtt116116AY.16.10.054511
E62V62LGttCtt110111All0.000021
E62V62LGtTTtG1111All0
E62V62FGttTtt7777AY.290.001215
E62V62FGttTtt7676B.1.10.001379
E62V62FGttTtt7373AY.390.001804
E62V62FGttTtt7070B.10.000641
E62V62FGttTtt7070B.1.1770.000922
E62V62FGttTtt6969AY.30.000686
E62V62FGttTtt6868P.10.001071
E62V62delGTT---6767All0.000013
E62V62FGttTtt6767AY.1090.049556
E62V62FGttTtt6767B.1.1.2140.003716
E62V62FGttTtt5858B.1.20.000511
E62V62FGttTtt5656AY.98.10.002712
E62V62FGttTtt5252AY.250.000313
E62V62FGttTtt5050AY.260.001416
E62V62FGttTtt4545AY.1170.003803
E62V62FGttTtt4444AY.116.10.013703
E62V62FGttTtt4444AY.320.023429
E62V62LGttCtt4242B.1.617.20.000158
E62V62FGttTtt4141D.20.003077
E62V62VgtTgtC3636AY.440.000219
E62V62FGttTtt3333AY.4.20.000716
E62V62FGttTtt3333AY.480.015349
E62V62FGttTtt3030AY.200.001166
E62V62FGttTtt2929AY.4.40.011866
E62V62FGttTtt2929AY.50.000599
E62V62VgtTgtC2727AY.250.000162
E62V62FGttTtt2626AY.300.010289
E62V62FGttTtt2626AY.620.011329
E62V62LGttCtt2626B.1.177.240.033679
E62V62FGttTtt2525AY.130.004024
E62V62FGttTtt2525B.1.1.2910.01856
E62V62FGttTtt2424AY.1200.000892
E62V62FGttTtt2424AY.460.002498
E62V62FGttTtt2424AY.860.019917
E62V62FGttTtt2222AY.980.001738
E62V62IGttAtt2222B.1.1.70.00002
E62V62FGttTtt2222C.370.002553
E62V62FGttTtt1919AY.330.001269
E62V62FGttTtt1919B.1.3110.005217
E62V62FGttTtt1919B.1.617.10.00245
E62V62FGttTtt1818AY.1000.000828
E62V62FGttTtt1818AY.1100.002028
E62V62IGttAtt1818AY.40.000028
E62V62FGttTtt1818AY.60.00074
E62V62FGttTtt1616AY.1210.002165
E62V62FGttTtt1616B.1.2210.001137
E62V62FGttTtt1616B.1.2390.019536
E62V62IGttAtt1515AY.250.00009
E62V62FGttTtt1515AY.680.004106
E62V62FGttTtt1414A.2.50.006986
E62V62AgTtgCt1214All0.000002
E62V62AgTTgCC214All0
E62V62FGttTtt1414AY.590.007415
E62V62FGttTtt1414AY.610.001467
E62V62FGttTtt1414AY.9.10.001172
E62V62VgtTgtC714B.1.20.000062
E62V62VgtTgtA714B.1.20.000062
E62V62FGttTtt1414B.1.5260.000329
E62V62FGttTtt1414P.20.002613
E62V62FGttTtt1313AY.9.20.000477
E62V62FGttTtt1212AY.410.003527
E62V62IGttAtt1212AY.46.60.000866
E62V62FGttTtt1212AY.550.011009
E62V62FGttTtt1212B.1.5610.004764
E62V62FGttTtt1111AY.740.001272
E62V62FGttTtt1111B.1.1.2070.013002
E62V62FGttTtt1111B.1.1.5190.000437
E62V62FGttTtt1111B.1.5250.001245
E62V62FGttTtt1111Q.30.001595
E62V62FGttTtt1010AY.1160.002868
E62V62FGttTtt1010AY.120.003161
E62V62VgtTgtC1010AY.40.000016
E62V62FGttTtt1010AY.450.001217
E62V62FGttTtt1010B.1.1.3170.004117
E62V62FGttTtt1010B.1.5240.014065
E62V62FGttTtt1010B.1.6370.000731
E62V62delGTT---1010P.10.000158
E62V62FGttTtt99AY.230.000628
E62V62FGttTtt99AY.420.000362
E62V62FGttTtt99AY.470.00028
E62V62FGttTtt99AY.540.000858
E62V62FGttTtt99AY.670.004178
E62V62FGttTtt99AY.99.20.000829
E62V62delGTT---99B.10.000082
E62V62FGttTtt88AY.1180.000501
E62V62FGttTtt88AY.270.000518
E62V62FGttTtt88AY.4.50.00086
E62V62FGttTtt88B.1.2430.000557
E62V62IGttAtt88B.1.2430.000557
E62V62IGttAtt88B.1.617.20.00003
E62V62FGttTtt77AY.100.00371
E62V62LGttCtt77AY.40.000011
E62V62FGttTtt77B.1.1.3180.002112
E62V62VgtTgtC67B.1.1.70.000005
E62V62VgtTgtA17B.1.1.70.000001
E62V62FGttTtt77B.1.177.320.009447
E62V62FGttTtt77B.1.3690.001997
E62V62FGttTtt77B.1.5750.002124
E62V62FGttTtt77P.1.140.000335
E62V62delGTT---77P.1.150.001626
E62V62FGttTtt77R.10.00063
E62V62FGttTtt66A.121
E62V62FGttTtt66AY.190.006842
E62V62FGttTtt66AY.34.10.00306
E62V62FGttTtt66AY.360.000889
E62V62VgtTgtC66AY.430.000027
E62V62FGttTtt66AY.46.40.000987
E62V62FGttTtt66AY.750.000336
E62V62FGttTtt66B.1.1.4320.007595
E62V62FGttTtt66B.1.177.170.004926
E62V62FGttTtt66B.1.6210.000531
E62V62FGttTtt66Q.80.000989
E62V62FGttTtt55AY.1060.001674
E62V62FGttTtt55AY.29.10.001103
E62V62FGttTtt55AY.380.002496
E62V62FGttTtt55AY.780.007704
E62V62FGttTtt55B.1.1.250.002843
E62V62LGttCtt55B.1.1.70.000004
E62V62FGttTtt55B.1.177.210.000382
E62V62FGttTtt55B.1.2400.001078
E62V62FGttTtt55B.1.4270.000252
E62V62FGttTtt55B.1.4290.000118
E62V62FGttTtt55B.1.5960.000436
E62V62FGttTtt55B.1.6250.011765
E62V62FGttTtt55P.1.160.001871
E62V62GgTtgGt24All0
E62V62GgTTgGG14All0
E62V62GgTTgGC14All0
E62V62FGttTtt44AY.1130.00057
E62V62IGttAtt44AY.1190.000141
E62V62VgtTgtC44AY.330.000267
E62V62FGttTtt44AY.400.003857
E62V62FGttTtt44AY.830.006897
E62V62FGttTtt44AY.840.00175
E62V62FGttTtt44B.1.1.2440.061538
E62V62FGttTtt44B.1.1.280.001245
E62V62delGTT---44B.1.1.70.000004
E62V62FGttTtt44B.1.2320.002149
E62V62FGttTtt44B.1.36.170.001976
E62V62FGttTtt44B.1.6280.001409
E62V62VgtTgtC44P.10.000063
E62V62GgTTgGG130.055556
E62V62GgTtgGt130.055556
E62V62GgTTgGC130.055556
E62V62FGttTtt33AE.80.001467
E62V62del1Gtt-tt33All0.000001
E62V62LGttCtt33AY.250.000018
E62V62delGTT---33AY.250.000018
E62V62FGttTtt33AY.3.10.000256
E62V62IGttAtt33AY.430.000013
E62V62AgTtgCt33AY.440.000018
E62V62FGttTtt33AY.46.20.001906
E62V62FGttTtt33AY.530.000863
E62V62FGttTtt33AY.640.001786
E62V62IGttAtt33AY.70.000588
E62V62FGttTtt33AY.70.000588
E62V62FGttTtt33AY.75.10.000541
E62V62FGttTtt33AY.910.002191
E62V62FGttTtt33AY.920.000862
E62V62FGttTtt33AY.930.000819
E62V62FGttTtt33B0.000383
E62V62FGttTtt33B.1.1.10.00098
E62V62FGttTtt33B.1.1.2220.000612
E62V62FGttTtt33B.1.1.330.001263
E62V62FGttTtt33B.1.1.570.034483
E62V62AgTtgCt33B.1.1.70.000003
E62V62FGttTtt33B.1.1890.012876
E62V62IGttAtt33B.1.20.000026
E62V62FGttTtt33B.1.214.20.001799
E62V62FGttTtt33B.1.36.220.003623
E62V62FGttTtt33B.1.36.290.001552
E62V62FGttTtt33B.1.3960.002117
E62V62FGttTtt33B.1.4000.001287
E62V62FGttTtt33B.1.4220.002437
E62V62FGttTtt33B.1.466.20.001174
E62V62VgtTgtC33B.1.617.20.000011
E62V62delGTT---33B.1.6210.000266
E62V62FGttTtt33C.36.30.001702
E62V62delGTT---33C.370.000348
E62V62FGttTtt33P.1.150.000697
E62V62FGttTtt33P.1.170.000485
E62V62HGTTCAC220.111111
E62V62delGTT---220.111111
E62V62VgtTgtC120.055556
E62V62CGTTTGC120.055556
E62V62CGTtTGt120.055556
E62V62FGtTTtC120.055556
E62V62FGttTtt120.055556
E62V62VgtTgtG120.055556
E62V62HGTTCAC22All0
E62V62CGTtTGt12All0
E62V62CGTTTGC12All0
E62V62FGttTtt22AN.10.04
E62V62FGttTtt22AY.1010.000981
E62V62LGttCtt22AY.1020.000053
E62V62FGttTtt22AY.1040.003968
E62V62FGttTtt22AY.1070.000932
E62V62LGttCtt22AY.1200.000074
E62V62LGttCtt22AY.120.2.10.000997
E62V62FGttTtt22AY.210.003795
E62V62FGttTtt22AY.280.003781
E62V62FGttTtt22AY.340.000194
E62V62FGttTtt22AY.370.000632
E62V62IGttAtt22AY.390.000049
E62V62FGttTtt22AY.39.10.000079
E62V62delGTT---22AY.40.000003
E62V62AgTtgCt22AY.40.000003
E62V62delGTT---22AY.430.000009
E62V62delGTT---22AY.440.000012
E62V62FGttTtt22AY.46.10.002053
E62V62VgtTgtC22AY.46.60.000144
E62V62FGttTtt22AY.46.60.000144
E62V62FGttTtt22AY.490.00639
E62V62FGttTtt22AY.5.30.000675
E62V62FGttTtt22AY.5.40.000553
E62V62FGttTtt22AY.510.001818
E62V62FGttTtt22AY.7.10.000225
E62V62FGttTtt22AY.710.00095
E62V62FGttTtt22AY.770.002255
E62V62FGttTtt22AY.970.003401
E62V62IGttAtt22AY.99.20.000184
E62V62FGttTtt22AZ.50.007018
E62V62IGttAtt22B.10.000018
E62V62AgTtgCt22B.10.000018
E62V62FGttTtt22B.1.1.2410.004141
E62V62FGttTtt22B.1.1.3010.002358
E62V62FGttTtt22B.1.1.3060.000877
E62V62FGttTtt22B.1.1.3370.007194
E62V62FGttTtt22B.1.1.5260.007092
E62V62FGttTtt22B.1.1060.0625
E62V62FGttTtt22B.1.1390.001466
E62V62VgtTgtA22B.1.1600.000062
E62V62FGttTtt22B.1.177.330.003289
E62V62FGttTtt22B.1.177.40.000422
E62V62FGttTtt22B.1.221.20.008032
E62V62FGttTtt22B.1.2340.000264
E62V62VgtTgtC22B.1.360.000292
E62V62FGttTtt22B.1.360.000292
E62V62FGttTtt22B.1.36.10.002281
E62V62IGttAtt22B.1.3990.003868
E62V62IGttAtt22B.1.5960.000174
E62V62FGttTtt22B.1.910.004149
E62V62FGttTtt22B.4.70.020202
E62V62FGttTtt22C.360.001821
E62V62FGttTtt22N.60.014184
E62V62FGttTtt22P.1.100.000539
E62V62LGtTTtG110.055556
E62V62WGTTTGG110.055556
E62V62FGttTtt11A0.000387
E62V62IGttAtt11A.20.000662
E62V62FGttTtt11A.20.000662
E62V62FGttTtt11A.2.5.10.004808
E62V62FGttTtt11A.23.10.000704
E62V62FGttTtt11AD.20.000219
E62V62WGTTTGG11All0
E62V62DgTtgAt11All0
E62V62SGTtTCt11All0
E62V62FGttTtt11AU.10.001266
E62V62FGttTtt11AV.10.005051
E62V62delGTT---11AY.100.00053
E62V62IGttAtt11AY.1020.000027
E62V62LGttCtt11AY.1030.000006
E62V62VgtTgtC11AY.1060.000335
E62V62FGttTtt11AY.1080.001103
E62V62FGttTtt11AY.110.001339
E62V62IGttAtt11AY.1100.000113
E62V62FGttTtt11AY.1110.000183
E62V62IGttAtt11AY.1130.000142
E62V62IGttAtt11AY.1170.000085
E62V62delGTT---11AY.1180.000063
E62V62LGttCtt11AY.1190.000035
E62V62delGTT---11AY.1200.000037
E62V62IGttAtt11AY.1210.000135
E62V62FGttTtt11AY.160.00038
E62V62IGttAtt11AY.200.000039
E62V62delGTT---11AY.230.00007
E62V62VgtTgtC11AY.23.10.000417
E62V62FGttTtt11AY.23.10.000417
E62V62FGttTtt11AY.240.000431
E62V62delGTT---11AY.260.000028
E62V62IGttAtt11AY.260.000028
E62V62LGttCtt11AY.30.00001
E62V62IGttAtt11AY.3.10.000085
E62V62FGttTtt11AY.350.000233
E62V62VgtTgtC11AY.350.000233
E62V62delGTT---11AY.390.000025
E62V62IGttAtt11AY.4.20.000022
E62V62IGttAtt11AY.4.2.10.000149
E62V62FGttTtt11AY.4.30.000842
E62V62IGttAtt11AY.440.000006
E62V62LGttCtt11AY.440.000006
E62V62IGttAtt11AY.46.30.000934
E62V62FGttTtt11AY.46.50.000198
E62V62IGttAtt11AY.470.000031
E62V62IGttAtt11AY.50.000021
E62V62VgtTgtC11AY.540.000095
E62V62delGTT---11AY.540.000095
E62V62FGttTtt11AY.560.001605
E62V62LGttCtt11AY.560.001605
E62V62FGttTtt11AY.580.000907
E62V62IGttAtt11AY.610.000105
E62V62FGttTtt11AY.650.000533
E62V62LGttCtt11AY.660.00107
E62V62delGTT---11AY.680.000274
E62V62FGttTtt11AY.730.000665
E62V62delGTT---11AY.75.10.00018
E62V62FGttTtt11AY.800.001129
E62V62delGTT---11AY.850.000427
E62V62FGttTtt11AY.880.000884
E62V62LGttCtt11AY.90.000068
E62V62delGTT---11AY.950.000761
E62V62FGttTtt11AY.950.000761
E62V62FGttTtt11AY.99.10.001553
E62V62LGttCtt11AZ.20.000821
E62V62delGTT---11B0.000128
E62V62LGttCtt11B.10.000009
E62V62SGTtTCt11B.10.000009
E62V62VgtTgtC11B.10.000009
E62V62IGttAtt11B.1.10.000018
E62V62AgTTgCC11B.1.10.000018
E62V62DgTtgAt11B.1.10.000018
E62V62LGttCtt11B.1.10.000018
E62V62VgtTgtC11B.1.10.000018
E62V62FGttTtt11B.1.1.1630.007634
E62V62FGttTtt11B.1.1.1710.003676
E62V62FGttTtt11B.1.1.1980.001468
E62V62FGttTtt11B.1.1.2000.007463
E62V62LGttCtt11B.1.1.2140.000055
E62V62FGttTtt11B.1.1.2250.007194
E62V62FGttTtt11B.1.1.260.005236
E62V62VgtTgtC11B.1.1.2700.010309
E62V62FGttTtt11B.1.1.2770.000759
E62V62FGttTtt11B.1.1.2820.011628
E62V62FGttTtt11B.1.1.2840.000107
E62V62FGttTtt11B.1.1.2940.001266
E62V62FGttTtt11B.1.1.3030.002762
E62V62FGttTtt11B.1.1.3610.045455
E62V62FGttTtt11B.1.1.3630.005988
E62V62FGttTtt11B.1.1.3890.006061
E62V62VgtTgtC11B.1.1.390.00051
E62V62AgTTgCC11B.1.1.4090.002833
E62V62GgTtgGt11B.1.1.4320.001266
E62V62LGttCtt11B.1.1.4320.001266
E62V62FGttTtt11B.1.1.4340.000349
E62V62FGttTtt11B.1.1.50.008333
E62V62FGttTtt11B.1.1.500.000679
E62V62FGttTtt11B.1.1.700.000341
E62V62VgtTgtC11B.1.1.990.02381
E62V62FGttTtt11B.1.1080.005814
E62V62AgTtgCt11B.1.1260.001276
E62V62FGttTtt11B.1.1280.000635
E62V62FGttTtt11B.1.160.140.002119
E62V62FGttTtt11B.1.160.160.000929
E62V62del1Gtt-tt11B.1.1610.017241
E62V62VgtTgtA11B.1.1770.000013
E62V62FGttTtt11B.1.177.160.000664
E62V62FGttTtt11B.1.177.180.00116
E62V62FGttTtt11B.1.177.570.000281
E62V62FGttTtt11B.1.177.690.001484
E62V62FGttTtt11B.1.177.810.000189
E62V62FGttTtt11B.1.177.820.000477
E62V62FGttTtt11B.1.177.860.000183
E62V62FGttTtt11B.1.177.870.000728
E62V62IGttAtt11B.1.1780.02381
E62V62LGttCtt11B.1.20.000009
E62V62del1Gtt-tt11B.1.20.000009
E62V62FGttTtt11B.1.2060.000816
E62V62VgtTgtA11B.1.2060.000816
E62V62delGTT---11B.1.2180.005155
E62V62FGttTtt11B.1.2230.002778
E62V62LGttCtt11B.1.2340.000132
E62V62AgTtgCt11B.1.2360.002053
E62V62VgtTgtC11B.1.2410.000812
E62V62LGttCtt11B.1.2430.00007
E62V62IGttAtt11B.1.2470.014925
E62V62VgtTgtC11B.1.2580.000067
E62V62FGttTtt11B.1.2580.000067
E62V62FGttTtt11B.1.2650.001271
E62V62FGttTtt11B.1.3130.006579
E62V62VgtTgtA11B.1.3510.00003
E62V62FGttTtt11B.1.351.20.000303
E62V62FGttTtt11B.1.351.30.000876
E62V62FGttTtt11B.1.351.50.0006
E62V62IGttAtt11B.1.360.000146
E62V62delGTT---11B.1.360.000146
E62V62FGttTtt11B.1.36.180.00042
E62V62IGttAtt11B.1.3690.000285
E62V62VgtTgtC11B.1.3690.000285
E62V62FGttTtt11B.1.3910.001127
E62V62FGttTtt11B.1.3970.004854
E62V62LGttCtt11B.1.3980.002976
E62V62VgtTgtA11B.1.4000.000429
E62V62VgtTgtC11B.1.4290.000024
E62V62LGttCtt11B.1.438.10.000107
E62V62FGttTtt11B.1.4480.002625
E62V62FGttTtt11B.1.4780.011765
E62V62FGttTtt11B.1.4970.000315
E62V62FGttTtt11B.1.5030.002488
E62V62FGttTtt11B.1.5230.002451
E62V62IGttAtt11B.1.5250.000113
E62V62FGttTtt11B.1.5600.00463
E62V62IGttAtt11B.1.5610.000397
E62V62FGttTtt11B.1.5760.000907
E62V62FGttTtt11B.1.5890.007576
E62V62FGttTtt11B.1.60.017241
E62V62FGttTtt11B.1.6090.000479
E62V62delGTT---11B.1.617.10.000129
E62V62del1Gtt-tt11B.1.617.10.000129
E62V62LGttCtt11B.1.619.10.000641
E62V62LGttCtt11B.1.6210.000089
E62V62IGttAtt11B.1.6210.000089
E62V62FGttTtt11B.1.621.10.000506
E62V62FGttTtt11B.1.6230.000536
E62V62delGTT---11B.1.6270.00202
E62V62FGttTtt11B.1.6330.041667
E62V62delGTT---11B.1.6380.052632
E62V62FGttTtt11B.550.00295
E62V62FGttTtt11C.20.016129
E62V62FGttTtt11C.260.007353
E62V62VgtTgtC11C.350.000774
E62V62delGTT---11C.37.10.002618
E62V62FGttTtt11C.37.10.002618
E62V62FGttTtt11C.80.004464
E62V62VgtTgtC11D.20.000075
E62V62LGttCtt11D.20.000075
E62V62FGttTtt11D.30.005917
E62V62IGttAtt11P.10.000016
E62V62LGttCtt11P.10.000016
E62V62FGttTtt11P.1.10.000318
E62V62VgtTgtC11P.1.100.000269
E62V62delGTT---11P.1.130.000898
E62V62delGTT---11P.1.70.000319
E62V62FGttTtt11P.1.70.000319
E62V62FGttTtt11P.40.003802
E62V62IGttAtt11Q.80.000165
E62V62IGttAtt11R.10.00009