CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 49

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E49V49LnonsynGtgTtg265426450.99660926389-26391
E49V49LnonsynGtgCtg265490.0033911126389-26391
E49V49VsyngtGgtT3743220.86096326389-26391
E49V49VsyngtGgtA374470.12566826389-26391
E49V49VsyngtGgtC37450.01336926389-26391
E49V49MnonsynGtgAtg140140126389-26391
E49V49deldelGTG---8282126389-26391
E49V49AnonsyngTggCg35340.97142926389-26391
E49V49AnonsyngTGgCT3510.028571426389-26391
E49V49EnonsyngTggAg77126389-26391
E49V49GnonsyngTggGg430.7526389-26391
E49V49FnonsynGtGTtT420.526389-26391
E49V49FnonsynGtGTtC420.526389-26391
E49V49del1delgtGgt-420.526389-26391
E49V49del1delGtg-tg420.526389-26391
E49V49GnonsyngTGgGC410.2526389-26391
E49V49WnonsynGTgTGg22126389-26391
E49V49CnonsynGTGTGC11126389-26391

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E49V49LGtgTtg26452654All0.000506
E49V49LGtgCtg92654All0.000002
E49V49LGtgTtg668671B.1.1.70.000598
E49V49LGtgCtg3671B.1.1.70.000003
E49V49LGtgTtg435435AY.30.004327
E49V49VgtGgtT322374All0.000062
E49V49VgtGgtA47374All0.000009
E49V49VgtGgtC5374All0.000001
E49V49LGtgTtg237238AY.40.000369
E49V49LGtgCtg1238AY.40.000002
E49V49LGtgTtg184184B.1.5900.836364
E49V49LGtgTtg159160B.1.20.0014
E49V49LGtgCtg1160B.1.20.000009
E49V49MGtgAtg140140All0.000027
E49V49LGtgTtg102102B.1.617.20.000384
E49V49LGtgTtg9595AY.330.006344
E49V49delGTG---8282All0.000016
E49V49VgtGgtT8080AY.9.10.006698
E49V49LGtgTtg5454AY.1030.000335
E49V49LGtgTtg4649B.10.000421
E49V49LGtgCtg349B.10.000027
E49V49MGtgAtg4848B.1.1.70.000043
E49V49LGtgTtg4343B.1.10.00078
E49V49VgtGgtT2439AY.250.000144
E49V49VgtGgtA1539AY.250.00009
E49V49AgTggCg3435All0.000007
E49V49AgTGgCT135All0
E49V49VgtGgtT3135AY.40.000048
E49V49VgtGgtA435AY.40.000006
E49V49VgtGgtT3135B.1.1.70.000028
E49V49VgtGgtA435B.1.1.70.000004
E49V49LGtgTtg3131AY.430.000137
E49V49LGtgTtg3131B.1.1.5190.001231
E49V49MGtgAtg2828AY.40.000044
E49V49LGtgTtg2727B.1.36.290.013968
E49V49LGtgTtg2525P.10.000394
E49V49LGtgTtg2323AY.440.00014
E49V49LGtgTtg2020AY.1200.000744
E49V49LGtgTtg2020AY.470.000622
E49V49LGtgTtg1919AY.9.20.000698
E49V49VgtGgtT1717AY.430.000075
E49V49LGtgTtg1515B.1.5260.000353
E49V49MGtgAtg1515B.1.6210.001328
E49V49LGtgTtg1515Q.80.002474
E49V49LGtgTtg1414AY.50.000289
E49V49LGtgTtg1313AY.1170.001099
E49V49delGTG---1313B.10.000119
E49V49LGtgTtg1313B.1.36.230.213115
E49V49VgtGgtT1313B.1.617.20.000049
E49V49LGtgTtg1212AY.90.000811
E49V49VgtGgtT1212B.1.177.40.002533
E49V49LGtgTtg1111AY.1020.000292
E49V49delGTG---1111P.10.000173
E49V49LGtgTtg910B.1.1770.000119
E49V49LGtgCtg110B.1.1770.000013
E49V49LGtgTtg1010B.1.177.570.00281
E49V49LGtgTtg1010B.1.2400.002156
E49V49LGtgTtg99AY.200.00035
E49V49LGtgTtg99AY.390.000222
E49V49VgtGgtT69B.10.000055
E49V49VgtGgtA39B.10.000027
E49V49LGtgTtg99B.1.1.5230.014063
E49V49LGtgTtg88AY.250.000048
E49V49LGtgTtg88AY.4.20.000174
E49V49VgtGgtT78AY.440.000043
E49V49VgtGgtC18AY.440.000006
E49V49LGtgTtg88AY.680.00219
E49V49MGtgAtg88B.1.20.00007
E49V49LGtgTtg88B.1.4290.000188
E49V49LGtgTtg88B.1.466.20.00313
E49V49VgtGgtT78C.36.30.003971
E49V49VgtGgtA18C.36.30.000567
E49V49LGtgTtg88P.1.70.002554
E49V49LGtgTtg88P.20.001493
E49V49VgtGgtT570.277778
E49V49VgtGgtC270.111111
E49V49EgTggAg77All0.000001
E49V49MGtgAtg77AY.30.00007
E49V49AgTggCg77AY.39.10.000277
E49V49AgTggCg77AY.40.000011
E49V49MGtgAtg77AY.4.10.005162
E49V49LGtgTtg77B.1.4270.000353
E49V49delGTG---77P.1.150.001626
E49V49LGtgTtg66AY.210.011385
E49V49VgtGgtT66AY.350.001398
E49V49LGtgTtg66AY.60.000247
E49V49LGtgTtg66AY.99.20.000553
E49V49VgtGgtT66B.1.10.000109
E49V49LGtgTtg55AY.100.00265
E49V49VgtGgtT35AY.1020.00008
E49V49VgtGgtA25AY.1020.000053
E49V49LGtgTtg55AY.1140.001156
E49V49LGtgTtg55AY.290.000079
E49V49LGtgTtg55AY.420.000201
E49V49LGtgTtg55AY.740.000578
E49V49LGtgTtg55AY.750.00028
E49V49AgTggCg55B.10.000046
E49V49LGtgTtg55B.1.1600.000156
E49V49LGtgTtg55B.1.258.170.00052
E49V49delGTG---55B.1.6210.000443
E49V49GgTggGg34All0.000001
E49V49FGtGTtT24All0
E49V49FGtGTtC24All0
E49V49del1gtGgt-24All0
E49V49del1Gtg-tg24All0
E49V49GgTGgGC14All0
E49V49LGtgTtg44AY.1000.000184
E49V49VgtGgtT44AY.1030.000025
E49V49LGtgTtg44AY.140.000352
E49V49VgtGgtT44AY.420.000161
E49V49LGtgTtg44AY.620.001743
E49V49VgtGgtT44B.1.1.2220.000816
E49V49VgtGgtT44B.1.1.2940.005063
E49V49delGTG---44B.1.1.70.000004
E49V49MGtgAtg44B.1.1770.000053
E49V49VgtGgtA34B.1.36.290.001552
E49V49VgtGgtT14B.1.36.290.000517
E49V49LGtgTtg44B.1.5950.001044
E49V49LGtgTtg44B.1.617.10.000516
E49V49delGTG---44C.370.000464
E49V49FGtGTtC230.111111
E49V49FGtGTtT130.055556
E49V49MGtgAtg33AY.1030.000019
E49V49LGtgTtg33AY.1100.000338
E49V49AgTggCg33AY.1180.000188
E49V49VgtGgtT33AY.1190.000106
E49V49MGtgAtg33AY.1200.000112
E49V49LGtgTtg33AY.230.000209
E49V49delGTG---33AY.250.000018
E49V49LGtgTtg33AY.260.000085
E49V49LGtgTtg33AY.3.10.000256
E49V49VgtGgtT33AY.9.20.00011
E49V49LGtgTtg33AY.920.000862
E49V49LGtgTtg33B.1.1.2160.002671
E49V49AgTggCg23B.1.1.70.000002
E49V49AgTGgCT13B.1.1.70.000001
E49V49LGtgTtg33B.1.177.120.000455
E49V49VgtGgtT23B.1.3510.000059
E49V49VgtGgtA13B.1.3510.00003
E49V49LGtgTtg33B.1.360.000438
E49V49LGtgTtg33B.1.3980.008929
E49V49LGtgTtg33B.1.4650.011407
E49V49VgtGgtT33B.1.617.10.000387
E49V49AgTggCg33P.10.000047
E49V49LGtgTtg220.111111
E49V49GgTggGg120.055556
E49V49GgTGgGC120.055556
E49V49VgtGgtT22A.2.50.000998
E49V49LGtgTtg22AD.20.000438
E49V49WGTgTGg22All0
E49V49VgtGgtT22AY.1100.000225
E49V49LGtgTtg22AY.1130.000285
E49V49LGtgTtg22AY.1180.000125
E49V49MGtgAtg22AY.1190.000071
E49V49VgtGgtT22AY.160.000759
E49V49LGtgTtg22AY.20.000712
E49V49AgTggCg22AY.250.000012
E49V49VgtGgtA12AY.260.000028
E49V49VgtGgtT12AY.260.000028
E49V49LGtgTtg22AY.300.000791
E49V49VgtGgtT22AY.390.000049
E49V49delGTG---22AY.40.000003
E49V49delGTG---22AY.430.000009
E49V49delGTG---22AY.440.000012
E49V49VgtGgtA12AY.450.000122
E49V49VgtGgtT12AY.450.000122
E49V49LGtgTtg22AY.610.00021
E49V49LGtgTtg22AY.650.001066
E49V49LGtgTtg22AY.690.000373
E49V49VgtGgtA22AY.7.10.000225
E49V49VgtGgtT12AY.750.000056
E49V49VgtGgtC12AY.750.000056
E49V49MGtgAtg22AY.98.10.000097
E49V49LGtgTtg22B0.000256
E49V49LGtgTtg22B.1.1.280.000622
E49V49LGtgTtg22B.1.177.730.001133
E49V49VgtGgtT22B.1.20.000018
E49V49VgtGgtT22B.1.2580.000133
E49V49LGtgTtg22B.1.438.10.000215
E49V49VgtGgtA22B.1.5230.004902
E49V49LGtgTtg22B.1.5960.000174
E49V49EgTggAg22B.1.6230.001073
E49V49LGtgTtg22B.1.6370.000146
E49V49LGtgTtg22D.20.00015
E49V49VgtGgtA22P.1.150.000465
E49V49LGtgTtg22P.1.170.000324
E49V49LGtgTtg22P.30.00319
E49V49WGTgTGg110.055556
E49V49CGTGTGC110.055556
E49V49LGtgTtg11A0.000387
E49V49VgtGgtT11A0.000387
E49V49VgtGgtA11A.2.40.003367
E49V49LGtgTtg11A.2.50.000499
E49V49CGTGTGC11All0
E49V49delGTG---11AY.100.00053
E49V49LGtgTtg11AY.1010.00049
E49V49AgTggCg11AY.1020.000027
E49V49AgTggCg11AY.1030.000006
E49V49LGtgTtg11AY.1050.000643
E49V49LGtgTtg11AY.1060.000335
E49V49LGtgTtg11AY.1070.000466
E49V49delGTG---11AY.1080.001103
E49V49VgtGgtT11AY.1080.001103
E49V49VgtGgtA11AY.1130.000142
E49V49delGTG---11AY.1180.000063
E49V49VgtGgtT11AY.1180.000063
E49V49LGtgTtg11AY.1190.000035
E49V49VgtGgtT11AY.120.000316
E49V49delGTG---11AY.1200.000037
E49V49VgtGgtT11AY.1200.000037
E49V49VgtGgtA11AY.120.10.000321
E49V49VgtGgtT11AY.120.20.001285
E49V49LGtgTtg11AY.1210.000135
E49V49VgtGgtT11AY.130.000161
E49V49LGtgTtg11AY.160.00038
E49V49MGtgAtg11AY.20.000356
E49V49delGTG---11AY.230.00007
E49V49EgTggAg11AY.250.000006
E49V49delGTG---11AY.260.000028
E49V49LGtgTtg11AY.320.000532
E49V49MGtgAtg11AY.330.000067
E49V49VgtGgtT11AY.330.000067
E49V49LGtgTtg11AY.340.000097
E49V49del1Gtg-tg11AY.34.10.00051
E49V49LGtgTtg11AY.350.000233
E49V49delGTG---11AY.390.000025
E49V49MGtgAtg11AY.390.000025
E49V49LGtgTtg11AY.39.10.00004
E49V49VgtGgtT11AY.4.20.000022
E49V49LGtgTtg11AY.4.50.000107
E49V49AgTggCg11AY.420.00004
E49V49MGtgAtg11AY.420.00004
E49V49MGtgAtg11AY.440.000006
E49V49LGtgTtg11AY.450.000122
E49V49LGtgTtg11AY.460.000104
E49V49LGtgTtg11AY.46.40.000165
E49V49VgtGgtT11AY.470.000031
E49V49LGtgTtg11AY.480.000465
E49V49LGtgTtg11AY.5.30.000337
E49V49VgtGgtT11AY.5.30.000337
E49V49VgtGgtT11AY.520.000814
E49V49VgtGgtA11AY.540.000095
E49V49delGTG---11AY.540.000095
E49V49LGtgTtg11AY.540.000095
E49V49LGtgTtg11AY.590.00053
E49V49MGtgAtg11AY.650.000533
E49V49VgtGgtT11AY.680.000274
E49V49delGTG---11AY.680.000274
E49V49LGtgTtg11AY.700.000209
E49V49LGtgTtg11AY.710.000475
E49V49delGTG---11AY.730.000665
E49V49LGtgTtg11AY.75.10.00018
E49V49delGTG---11AY.75.10.00018
E49V49VgtGgtA11AY.810.001992
E49V49MGtgAtg11AY.840.000437
E49V49LGtgTtg11AY.840.000437
E49V49del1gtGgt-11AY.850.000427
E49V49LGtgTtg11AY.850.000427
E49V49LGtgTtg11AY.9.10.000084
E49V49VgtGgtT11AY.920.000287
E49V49LGtgTtg11AY.930.000273
E49V49delGTG---11AY.950.000761
E49V49del1Gtg-tg11AY.970.001701
E49V49LGtgTtg11AY.98.10.000048
E49V49VgtGgtT11AY.99.20.000092
E49V49MGtgAtg11AY.99.20.000092
E49V49VgtGgtT11B0.000128
E49V49delGTG---11B0.000128
E49V49delGTG---11B.1.10.000018
E49V49MGtgAtg11B.1.10.000018
E49V49LGtgTtg11B.1.1.10.000327
E49V49delGTG---11B.1.1.1390.022727
E49V49LGtgTtg11B.1.1.1480.008772
E49V49LGtgTtg11B.1.1.1760.000439
E49V49delGTG---11B.1.1.2210.010101
E49V49LGtgTtg11B.1.1.2220.000204
E49V49LGtgTtg11B.1.1.2260.005814
E49V49delGTG---11B.1.1.2880.001916
E49V49VgtGgtT11B.1.1.2910.000742
E49V49LGtgTtg11B.1.1.2940.001266
E49V49LGtgTtg11B.1.1.3260.001761
E49V49LGtgTtg11B.1.1.330.000421
E49V49AgTggCg11B.1.1.370.000193
E49V49LGtgTtg11B.1.1.3720.000689
E49V49delGTG---11B.1.1.4090.002833
E49V49VgtGgtT11B.1.1.4320.001266
E49V49VgtGgtT11B.1.1.4850.016667
E49V49GgTggGg11B.1.1.70.000001
E49V49delGTG---11B.1.1.710.006061
E49V49LGtgTtg11B.1.130.002375
E49V49LGtgTtg11B.1.160.150.00495
E49V49EgTggAg11B.1.160.150.00495
E49V49LGtgTtg11B.1.160.220.006757
E49V49delGTG---11B.1.1610.017241
E49V49VgtGgtT11B.1.1770.000013
E49V49LGtgTtg11B.1.177.160.000664
E49V49LGtgTtg11B.1.177.440.000519
E49V49LGtgTtg11B.1.177.600.000218
E49V49LGtgTtg11B.1.177.650.000665
E49V49LGtgTtg11B.1.177.80.000752
E49V49del1gtGgt-11B.1.20.000009
E49V49EgTggAg11B.1.20.000009
E49V49LGtgTtg11B.1.2140.003663
E49V49delGTG---11B.1.2180.005155
E49V49MGtgAtg11B.1.2210.000071
E49V49VgtGgtT11B.1.2360.002053
E49V49VgtGgtT11B.1.2400.000216
E49V49LGtgTtg11B.1.2470.014925
E49V49AgTggCg11B.1.258.170.000104
E49V49LGtgTtg11B.1.258.70.001912
E49V49LGtgTtg11B.1.2890.00266
E49V49VgtGgtT11B.1.3010.005917
E49V49EgTggAg11B.1.3110.000275
E49V49MGtgAtg11B.1.3200.001245
E49V49LGtgTtg11B.1.3490.000715
E49V49LGtgTtg11B.1.3510.00003
E49V49LGtgTtg11B.1.36.160.001425
E49V49LGtgTtg11B.1.36.220.001208
E49V49GgTggGg11B.1.36.310.001751
E49V49LGtgTtg11B.1.3810.007812
E49V49LGtgTtg11B.1.3960.000706
E49V49LGtgTtg11B.1.4160.001269
E49V49LGtgTtg11B.1.416.10.001563
E49V49EgTggAg11B.1.4270.00005
E49V49LGtgTtg11B.1.4280.00102
E49V49LGtgTtg11B.1.4560.003268
E49V49LGtgTtg11B.1.4700.001404
E49V49VgtGgtT11B.1.4970.000315
E49V49VgtGgtT11B.1.5380.008065
E49V49delGTG---11B.1.5610.000397
E49V49LGtgTtg11B.1.5820.000491
E49V49VgtGgtT11B.1.5900.004545
E49V49VgtGgtT11B.1.5950.000261
E49V49WGTgTGg11B.1.5950.000261
E49V49VgtGgtT11B.1.6090.000479
E49V49delGTG---11B.1.617.10.000129
E49V49FGtGTtT11B.1.617.10.000129
E49V49MGtgAtg11B.1.617.20.000004
E49V49LGtgTtg11B.1.6210.000089
E49V49VgtGgtT11B.1.6210.000089
E49V49VgtGgtT11B.1.6230.000536
E49V49delGTG---11B.1.6270.00202
E49V49delGTG---11B.1.6380.052632
E49V49LGtgTtg11C.10.002392
E49V49LGtgTtg11C.350.000774
E49V49LGtgTtg11C.360.000911
E49V49delGTG---11C.360.000911
E49V49delGTG---11C.37.10.002618
E49V49VgtGgtC11D.20.000075
E49V49VgtGgtT11P.10.000016
E49V49LGtgTtg11P.1.10.20.041667
E49V49LGtgTtg11P.1.120.000484
E49V49delGTG---11P.1.130.000898
E49V49LGtgTtg11P.1.150.000232
E49V49VgtGgtA11P.1.40.000977
E49V49delGTG---11P.1.70.000319
E49V49MGtgAtg11Q.10.000126
E49V49LGtgTtg11R.10.00009