CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 4

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
E	4	F4F		syn	ttC	ttT	9161	9161	1	26254-26256
E	4	F4L		nonsyn	Ttc	Ctc	153	82	0.535948	26254-26256
E	4	F4L		nonsyn	ttC	ttA	153	64	0.418301	26254-26256
E	4	F4L		nonsyn	ttC	ttG	153	6	0.0392157	26254-26256
E	4	F4L		nonsyn	TtC	CtT	153	1	0.00653595	26254-26256
E	4	F4S		nonsyn	tTc	tCc	18	13	0.722222	26254-26256
E	4	F4S		nonsyn	tTC	tCT	18	3	0.166667	26254-26256
E	4	F4S		nonsyn	tTC	tCG	18	2	0.111111	26254-26256
E	4	F4del		del	TTC	---	14	14	1	26254-26256
E	4	F4I		nonsyn	Ttc	Atc	4	4	1	26254-26256
E	4	F4V		nonsyn	TtC	GtA	4	3	0.75	26254-26256
E	4	F4V		nonsyn	Ttc	Gtc	4	1	0.25	26254-26256
E	4	F4P		nonsyn	TTc	CCc	3	2	0.666667	26254-26256
E	4	F4del1		del	ttC	tt-	3	2	0.666667	26254-26256
E	4	F4P		nonsyn	TTC	CCT	3	1	0.333333	26254-26256
E	4	F4del1		del	Ttc	-tc	3	1	0.333333	26254-26256
E	4	F4Y		nonsyn	tTc	tAc	2	2	1	26254-26256
E	4	F4C		nonsyn	tTc	tGc	1	1	1	26254-26256
E	4	F4G		nonsyn	TTc	GGc	1	1	1	26254-26256

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
E	4	F4F	ttC	ttT	9161	9161	All	0.001752
E	4	F4F	ttC	ttT	2485	2485	B.1.1.7	0.002225
E	4	F4F	ttC	ttT	847	847	AY.4	0.001318
E	4	F4F	ttC	ttT	567	567	AY.44	0.003451
E	4	F4F	ttC	ttT	526	526	B.1.351	0.015636
E	4	F4F	ttC	ttT	455	455	B.1	0.004168
E	4	F4F	ttC	ttT	364	364	AY.103	0.00226
E	4	F4F	ttC	ttT	303	303	B.1.617.2	0.001141
E	4	F4F	ttC	ttT	286	286	AY.39	0.007067
E	4	F4F	ttC	ttT	216	216	AY.5	0.00446
E	4	F4F	ttC	ttT	194	194	AY.43	0.00086
E	4	F4F	ttC	ttT	176	176	B.1.1	0.003193
E	4	F4F	ttC	ttT	175	175	AY.25	0.001053
E	4	F4L	Ttc	Ctc	82	153	All	0.000016
E	4	F4L	ttC	ttA	64	153	All	0.000012
E	4	F4L	ttC	ttG	6	153	All	0.000001
E	4	F4L	TtC	CtT	1	153	All	0
E	4	F4F	ttC	ttT	152	152	B.1.2	0.001338
E	4	F4F	ttC	ttT	126	126	B.1.177	0.001659
E	4	F4F	ttC	ttT	118	118	AY.120	0.004387
E	4	F4F	ttC	ttT	101	101	AY.3	0.001005
E	4	F4F	ttC	ttT	98	98	B.1.526	0.002303
E	4	F4F	ttC	ttT	84	84	P.1	0.001323
E	4	F4F	ttC	ttT	73	73	AY.119	0.002578
E	4	F4F	ttC	ttT	71	71	AY.26	0.00201
E	4	F4F	ttC	ttT	67	67	AY.20	0.002604
E	4	F4F	ttC	ttT	66	66	B.1.160.28	0.192982
E	4	F4F	ttC	ttT	62	62	B.1.177.75	0.064516
E	4	F4F	ttC	ttT	59	59	AY.46.6	0.00426
E	4	F4F	ttC	ttT	52	52	B.1.429	0.001224
E	4	F4F	ttC	ttT	38	38	B.1.621	0.003364
E	4	F4F	ttC	ttT	37	37	B.1.369	0.010553
E	4	F4F	ttC	ttT	34	34	AY.4.2	0.000737
E	4	F4F	ttC	ttT	34	34	R.1	0.00306
E	4	F4F	ttC	ttT	33	33	AY.34	0.0032
E	4	F4F	ttC	ttT	30	30	AY.29	0.000473
E	4	F4F	ttC	ttT	30	30	B.1.160	0.000936
E	4	F4F	ttC	ttT	29	29	AY.94	0.012838
E	4	F4F	ttC	ttT	28	28	AY.117	0.002366
E	4	F4F	ttC	ttT	27	27	AY.100	0.001242
E	4	F4F	ttC	ttT	27	27	B.1.177.4	0.005699
E	4	F4L	Ttc	Ctc	26	26	AY.39	0.000642
E	4	F4F	ttC	ttT	25	25	AY.42	0.001006
E	4	F4F	ttC	ttT	25	25	AY.98.1	0.001211
E	4	F4F	ttC	ttT	23	23	AY.57	0.015092
E	4	F4F	ttC	ttT	23	23	AY.6	0.000946
E	4	F4F	ttC	ttT	22	22	B.1.1.519	0.000874
E	4	F4F	ttC	ttT	21	21	B.1.617.1	0.002708
E	4	F4F	ttC	ttT	20	20	AY.46.5	0.003968
E	4	F4F	ttC	ttT	19	19	AY.30	0.007519
E	4	F4F	ttC	ttT	19	19	B.1.427	0.000959
E	4	F4S	tTc	tCc	13	18	All	0.000002
E	4	F4S	tTC	tCT	3	18	All	0.000001
E	4	F4S	tTC	tCG	2	18	All	0
E	4	F4F	ttC	ttT	18	18	AY.9.1	0.001507
E	4	F4F	ttC	ttT	18	18	B.1.525	0.002037
E	4	F4F	ttC	ttT	17	17	AY.37	0.005373
E	4	F4F	ttC	ttT	17	17	AY.75	0.000952
E	4	F4F	ttC	ttT	17	17	B.1.126	0.021684
E	4	F4F	ttC	ttT	16	16	AY.33	0.001068
E	4	F4F	ttC	ttT	16	16	AY.4.2.1	0.002384
E	4	F4F	ttC	ttT	16	16	AY.47	0.000498
E	4	F4F	ttC	ttT	16	16	AY.9	0.001082
E	4	F4F	ttC	ttT	16	16	B.1.637	0.001169
E	4	F4L	ttC	ttA	15	15	AY.27	0.000971
E	4	F4F	ttC	ttT	15	15	B.1.243	0.001044
E	4	F4del	TTC	---	14	14	All	0.000003
E	4	F4F	ttC	ttT	14	14	AY.98	0.001106
E	4	F4F	ttC	ttT	13	13	AY.102	0.000345
E	4	F4L	Ttc	Ctc	9	13	B.1.1.7	0.000008
E	4	F4L	ttC	ttA	4	13	B.1.1.7	0.000004
E	4	F4F	ttC	ttT	12	12	AY.23	0.000837
E	4	F4F	ttC	ttT	12	12	AY.99.2	0.001106
E	4	F4F	ttC	ttT	12	12	B.1.36	0.001751
E	4	F4F	ttC	ttT	12	12	B.1.36.29	0.006208
E	4	F4F	ttC	ttT	11	11	AY.111	0.002015
E	4	F4F	ttC	ttT	11	11	AY.118	0.000689
E	4	F4F	ttC	ttT	11	11	AY.85	0.004699
E	4	F4F	ttC	ttT	10	10	AY.36	0.001482
E	4	F4F	ttC	ttT	10	10	AY.5.1	0.037594
E	4	F4F	ttC	ttT	10	10	B.1.1.318	0.003018
E	4	F4F	ttC	ttT	10	10	B.1.384	1
E	4	F4F	ttC	ttT	10	10	B.1.469	0.036101
E	4	F4L	Ttc	Ctc	6	10	B.1.617.2	0.000023
E	4	F4L	ttC	ttA	4	10	B.1.617.2	0.000015
E	4	F4F	ttC	ttT	10	10	P.2	0.001866
E	4	F4F	ttC	ttT	9	9	AY.46	0.000937
E	4	F4F	ttC	ttT	9	9	B.1.234	0.001187
E	4	F4F	ttC	ttT	9	9	B.1.258	0.000599
E	4	F4S	tTc	tCc	3	8		0.166667
E	4	F4S	tTC	tCT	3	8		0.166667
E	4	F4S	tTC	tCG	2	8		0.111111
E	4	F4F	ttC	ttT	8	8	AY.27	0.000518
E	4	F4F	ttC	ttT	8	8	AY.39.1	0.000317
E	4	F4F	ttC	ttT	8	8	AY.48	0.003721
E	4	F4L	ttC	ttA	8	8	AY.8	0.004848
E	4	F4F	ttC	ttT	8	8	B.1.177.21	0.000612
E	4	F4F	ttC	ttT	7	7	AY.32	0.003727
E	4	F4L	Ttc	Ctc	6	7	AY.4	0.000009
E	4	F4L	ttC	ttA	1	7	AY.4	0.000002
E	4	F4F	ttC	ttT	7	7	AY.9.2	0.000257
E	4	F4F	ttC	ttT	7	7	AY.92	0.002011
E	4	F4F	ttC	ttT	7	7	B.1.1.33	0.002946
E	4	F4F	ttC	ttT	7	7	B.1.221	0.000497
E	4	F4F	ttC	ttT	7	7	B.1.232	0.003761
E	4	F4F	ttC	ttT	7	7	C.37	0.000812
E	4	F4F	ttC	ttT	7	7	Q.1	0.000884
E	4	F4L	ttC	ttA	5	6	AY.43	0.000022
E	4	F4L	Ttc	Ctc	1	6	AY.43	0.000004
E	4	F4F	ttC	ttT	6	6	B.1.214.2	0.003597
E	4	F4F	ttC	ttT	5	5	A.2.5.1	0.024038
E	4	F4F	ttC	ttT	5	5	AY.113	0.000712
E	4	F4F	ttC	ttT	5	5	AY.3.1	0.000426
E	4	F4L	Ttc	Ctc	3	5	AY.33	0.0002
E	4	F4L	ttC	ttA	2	5	AY.33	0.000134
E	4	F4F	ttC	ttT	5	5	AY.35	0.001165
E	4	F4F	ttC	ttT	5	5	AY.4.5	0.000537
E	4	F4F	ttC	ttT	5	5	AY.41	0.00147
E	4	F4F	ttC	ttT	5	5	AY.45	0.000608
E	4	F4F	ttC	ttT	5	5	AY.59	0.002648
E	4	F4F	ttC	ttT	5	5	AY.74	0.000578
E	4	F4S	tTc	tCc	5	5	B.1	0.000046
E	4	F4F	ttC	ttT	5	5	B.1.160.16	0.004647
E	4	F4L	Ttc	Ctc	3	5	B.1.2	0.000026
E	4	F4L	ttC	ttA	2	5	B.1.2	0.000018
E	4	F4F	ttC	ttT	5	5	B.1.258.6	0.098039
E	4	F4F	ttC	ttT	5	5	B.1.36.31	0.008757
E	4	F4F	ttC	ttT	5	5	B.1.409	0.003906
E	4	F4F	ttC	ttT	5	5	B.1.576	0.004533
E	4	F4F	ttC	ttT	5	5	B.1.596	0.000436
E	4	F4F	ttC	ttT	5	5	B.1.623	0.002682
E	4	F4F	ttC	ttT	5	5	B.1.628	0.001762
E	4	F4F	ttC	ttT	5	5	D.2	0.000375
E	4	F4F	ttC	ttT	5	5	Q.8	0.000825
E	4	F4F	ttC	ttT	4	4	AD.2	0.000876
E	4	F4I	Ttc	Atc	4	4	All	0.000001
E	4	F4V	TtC	GtA	3	4	All	0.000001
E	4	F4V	Ttc	Gtc	1	4	All	0
E	4	F4L	ttC	ttA	3	4	AY.3	0.00003
E	4	F4L	Ttc	Ctc	1	4	AY.3	0.00001
E	4	F4L	ttC	ttA	4	4	AY.3.1	0.000341
E	4	F4F	ttC	ttT	4	4	AY.46.4	0.000658
E	4	F4F	ttC	ttT	4	4	AY.54	0.000381
E	4	F4F	ttC	ttT	4	4	AY.58	0.00363
E	4	F4L	Ttc	Ctc	2	4	B.1	0.000018
E	4	F4L	ttC	ttA	2	4	B.1	0.000018
E	4	F4F	ttC	ttT	4	4	B.1.1.1	0.001307
E	4	F4F	ttC	ttT	4	4	B.1.1.214	0.000222
E	4	F4F	ttC	ttT	4	4	B.1.1.216	0.003562
E	4	F4F	ttC	ttT	4	4	B.1.1.301	0.004717
E	4	F4F	ttC	ttT	4	4	B.1.177.52	0.00703
E	4	F4F	ttC	ttT	4	4	B.1.177.60	0.000874
E	4	F4F	ttC	ttT	4	4	B.1.177.73	0.002265
E	4	F4F	ttC	ttT	4	4	B.1.177.86	0.000734
E	4	F4F	ttC	ttT	4	4	B.1.311	0.001098
E	4	F4F	ttC	ttT	4	4	B.1.329	0.00243
E	4	F4F	ttC	ttT	4	4	B.1.459	0.016327
E	4	F4F	ttC	ttT	4	4	B.1.466.2	0.001565
E	4	F4F	ttC	ttT	3	3		0.166667
E	4	F4del1	ttC	tt-	2	3	All	0
E	4	F4P	TTc	CCc	2	3	All	0
E	4	F4del1	Ttc	-tc	1	3	All	0
E	4	F4P	TTC	CCT	1	3	All	0
E	4	F4F	ttC	ttT	3	3	AY.10	0.00159
E	4	F4F	ttC	ttT	3	3	AY.110	0.000338
E	4	F4F	ttC	ttT	3	3	AY.114	0.000693
E	4	F4L	Ttc	Ctc	3	3	AY.121	0.000406
E	4	F4F	ttC	ttT	3	3	AY.5.3	0.001012
E	4	F4F	ttC	ttT	3	3	AY.70	0.000626
E	4	F4F	ttC	ttT	3	3	AY.96	0.006224
E	4	F4F	ttC	ttT	3	3	B.1.1.222	0.000612
E	4	F4F	ttC	ttT	3	3	B.1.1.348	0.002389
E	4	F4F	ttC	ttT	3	3	B.1.1.372	0.002066
E	4	F4F	ttC	ttT	3	3	B.1.1.376	0.017857
E	4	F4L	ttC	ttA	3	3	B.1.1.397	0.006757
E	4	F4F	ttC	ttT	3	3	B.1.1.432	0.003797
E	4	F4L	ttC	ttA	2	3	B.1.177	0.000026
E	4	F4L	Ttc	Ctc	1	3	B.1.177	0.000013
E	4	F4F	ttC	ttT	3	3	B.1.177.57	0.000843
E	4	F4F	ttC	ttT	3	3	B.1.177.81	0.000568
E	4	F4V	TtC	GtA	3	3	B.1.235	0.007557
E	4	F4F	ttC	ttT	3	3	B.1.243.2	0.043478
E	4	F4F	ttC	ttT	3	3	B.1.346	0.003932
E	4	F4F	ttC	ttT	3	3	B.1.36.35	0.007812
E	4	F4F	ttC	ttT	3	3	B.1.367	0.002377
E	4	F4F	ttC	ttT	3	3	B.1.400	0.001287
E	4	F4F	ttC	ttT	3	3	B.1.539	0.052632
E	4	F4F	ttC	ttT	3	3	B.1.564	0.001278
E	4	F4F	ttC	ttT	3	3	B.1.595	0.000783
E	4	F4F	ttC	ttT	3	3	B.1.595.1	0.017544
E	4	F4del	TTC	---	3	3	B.1.617.2	0.000011
E	4	F4F	ttC	ttT	3	3	B.40	0.001093
E	4	F4F	ttC	ttT	3	3	C.36	0.002732
E	4	F4F	ttC	ttT	3	3	N.4	0.012766
E	4	F4F	ttC	ttT	3	3	P.1.15	0.000697
E	4	F4F	ttC	ttT	3	3	P.1.4	0.00293
E	4	F4del	TTC	---	2	2		0.111111
E	4	F4L	Ttc	Ctc	1	2		0.055556
E	4	F4L	TtC	CtT	1	2		0.055556
E	4	F4P	TTC	CCT	1	2		0.055556
E	4	F4P	TTc	CCc	1	2		0.055556
E	4	F4L	ttC	ttA	1	2	A	0.000387
E	4	F4L	ttC	ttG	1	2	A	0.000387
E	4	F4F	ttC	ttT	2	2	A.2.5	0.000998
E	4	F4Y	tTc	tAc	2	2	All	0
E	4	F4F	ttC	ttT	2	2	AY.116	0.000574
E	4	F4F	ttC	ttT	2	2	AY.120.1	0.000642
E	4	F4F	ttC	ttT	2	2	AY.120.2	0.002571
E	4	F4F	ttC	ttT	2	2	AY.120.2.1	0.000997
E	4	F4F	ttC	ttT	2	2	AY.121	0.000271
E	4	F4L	Ttc	Ctc	1	2	AY.23	0.00007
E	4	F4L	ttC	ttA	1	2	AY.23	0.00007
E	4	F4F	ttC	ttT	2	2	AY.4.4	0.000818
E	4	F4F	ttC	ttT	2	2	AY.67	0.000929
E	4	F4F	ttC	ttT	2	2	AY.7	0.000392
E	4	F4F	ttC	ttT	2	2	AY.71	0.00095
E	4	F4F	ttC	ttT	2	2	AY.99.1	0.003106
E	4	F4F	ttC	ttT	2	2	AZ.1	0.001735
E	4	F4L	Ttc	Ctc	1	2	B.1.1	0.000018
E	4	F4L	ttC	ttA	1	2	B.1.1	0.000018
E	4	F4L	ttC	ttG	2	2	B.1.1.1	0.000653
E	4	F4F	ttC	ttT	2	2	B.1.1.161	0.007067
E	4	F4F	ttC	ttT	2	2	B.1.1.236	0.013793
E	4	F4F	ttC	ttT	2	2	B.1.1.265	0.006309
E	4	F4F	ttC	ttT	2	2	B.1.1.284	0.000215
E	4	F4F	ttC	ttT	2	2	B.1.1.294	0.002532
E	4	F4F	ttC	ttT	2	2	B.1.1.306	0.000877
E	4	F4F	ttC	ttT	2	2	B.1.1.317	0.000823
E	4	F4F	ttC	ttT	2	2	B.1.1.326	0.003521
E	4	F4F	ttC	ttT	2	2	B.1.1.356	0.017094
E	4	F4F	ttC	ttT	2	2	B.1.1.37	0.000386
E	4	F4F	ttC	ttT	2	2	B.1.1.482	0.046512
E	4	F4F	ttC	ttT	2	2	B.1.1.50	0.001358
E	4	F4F	ttC	ttT	2	2	B.1.1.63	0.000772
E	4	F4del	TTC	---	2	2	B.1.1.7	0.000002
E	4	F4L	Ttc	Ctc	2	2	B.1.177.16	0.001329
E	4	F4F	ttC	ttT	2	2	B.1.177.79	0.004684
E	4	F4L	Ttc	Ctc	2	2	B.1.177.87	0.001456
E	4	F4F	ttC	ttT	2	2	B.1.240	0.000431
E	4	F4L	Ttc	Ctc	2	2	B.1.240	0.000431
E	4	F4F	ttC	ttT	2	2	B.1.258.17	0.000208
E	4	F4F	ttC	ttT	2	2	B.1.265	0.002541
E	4	F4F	ttC	ttT	2	2	B.1.324	0.00321
E	4	F4F	ttC	ttT	2	2	B.1.35	0.016949
E	4	F4F	ttC	ttT	2	2	B.1.395	0.014085
E	4	F4L	ttC	ttA	1	2	B.1.429	0.000024
E	4	F4L	Ttc	Ctc	1	2	B.1.429	0.000024
E	4	F4F	ttC	ttT	2	2	B.1.467	0.08
E	4	F4F	ttC	ttT	2	2	B.1.471	0.005464
E	4	F4F	ttC	ttT	2	2	B.1.538	0.016129
E	4	F4F	ttC	ttT	2	2	B.1.541	0.00885
E	4	F4F	ttC	ttT	2	2	B.1.577	0.001375
E	4	F4F	ttC	ttT	2	2	B.1.609	0.000959
E	4	F4I	Ttc	Atc	2	2	B.1.617.2	0.000008
E	4	F4F	ttC	ttT	2	2	B.4	0.004415
E	4	F4F	ttC	ttT	2	2	P.1.14	0.000096
E	4	F4F	ttC	ttT	2	2	P.1.7	0.000639
E	4	F4P	TTc	CCc	1	1	A	0.000387
E	4	F4F	ttC	ttT	1	1	A.1	0.000282
E	4	F4L	ttC	ttA	1	1	A.2	0.000662
E	4	F4F	ttC	ttT	1	1	A.2.5.2	0.001572
E	4	F4F	ttC	ttT	1	1	A.28	0.002646
E	4	F4G	TTc	GGc	1	1	All	0
E	4	F4C	tTc	tGc	1	1	All	0
E	4	F4L	Ttc	Ctc	1	1	AU.3	0.00211
E	4	F4L	Ttc	Ctc	1	1	AY.103	0.000006
E	4	F4F	ttC	ttT	1	1	AY.104	0.001984
E	4	F4F	ttC	ttT	1	1	AY.11	0.001339
E	4	F4L	ttC	ttG	1	1	AY.113	0.000142
E	4	F4F	ttC	ttT	1	1	AY.116.1	0.000311
E	4	F4del	TTC	---	1	1	AY.118	0.000063
E	4	F4F	ttC	ttT	1	1	AY.13	0.000161
E	4	F4F	ttC	ttT	1	1	AY.16	0.00038
E	4	F4F	ttC	ttT	1	1	AY.16.1	0.00047
E	4	F4F	ttC	ttT	1	1	AY.24	0.000431
E	4	F4del1	ttC	tt-	1	1	AY.25	0.000006
E	4	F4L	ttC	ttA	1	1	AY.26	0.000028
E	4	F4L	Ttc	Ctc	1	1	AY.29	0.000016
E	4	F4F	ttC	ttT	1	1	AY.34.1	0.00051
E	4	F4F	ttC	ttT	1	1	AY.38	0.000499
E	4	F4del	TTC	---	1	1	AY.39	0.000025
E	4	F4S	tTc	tCc	1	1	AY.4	0.000002
E	4	F4del	TTC	---	1	1	AY.4.5	0.000107
E	4	F4del	TTC	---	1	1	AY.43	0.000004
E	4	F4L	ttC	ttG	1	1	AY.44	0.000006
E	4	F4F	ttC	ttT	1	1	AY.46.2	0.000635
E	4	F4Y	tTc	tAc	1	1	AY.47	0.000031
E	4	F4F	ttC	ttT	1	1	AY.52	0.000814
E	4	F4L	Ttc	Ctc	1	1	AY.6	0.000041
E	4	F4F	ttC	ttT	1	1	AY.61	0.000105
E	4	F4F	ttC	ttT	1	1	AY.64	0.000595
E	4	F4del	TTC	---	1	1	AY.68	0.000274
E	4	F4F	ttC	ttT	1	1	AY.7.2	0.000559
E	4	F4del	TTC	---	1	1	AY.75	0.000056
E	4	F4F	ttC	ttT	1	1	AY.77	0.001127
E	4	F4F	ttC	ttT	1	1	AY.9.2.1	0.001976
E	4	F4F	ttC	ttT	1	1	AY.90	0.000684
E	4	F4F	ttC	ttT	1	1	AY.91	0.00073
E	4	F4F	ttC	ttT	1	1	AY.97	0.001701
E	4	F4F	ttC	ttT	1	1	B	0.000128
E	4	F4S	tTc	tCc	1	1	B	0.000128
E	4	F4del1	Ttc	-tc	1	1	B.1	0.000009
E	4	F4F	ttC	ttT	1	1	B.1.1.121	0.002427
E	4	F4F	ttC	ttT	1	1	B.1.1.123	0.017857
E	4	F4F	ttC	ttT	1	1	B.1.1.174	0.003378
E	4	F4F	ttC	ttT	1	1	B.1.1.176	0.000439
E	4	F4G	TTc	GGc	1	1	B.1.1.194	0.00495
E	4	F4C	tTc	tGc	1	1	B.1.1.194	0.00495
E	4	F4V	Ttc	Gtc	1	1	B.1.1.194	0.00495
E	4	F4F	ttC	ttT	1	1	B.1.1.220	0.001859
E	4	F4F	ttC	ttT	1	1	B.1.1.232	0.001815
E	4	F4F	ttC	ttT	1	1	B.1.1.274	0.005051
E	4	F4F	ttC	ttT	1	1	B.1.1.279	0.001121
E	4	F4F	ttC	ttT	1	1	B.1.1.280	0.003086
E	4	F4F	ttC	ttT	1	1	B.1.1.291	0.000742
E	4	F4F	ttC	ttT	1	1	B.1.1.332	0.03125
E	4	F4F	ttC	ttT	1	1	B.1.1.336	0.016667
E	4	F4F	ttC	ttT	1	1	B.1.1.392	0.052632
E	4	F4F	ttC	ttT	1	1	B.1.1.434	0.000349
E	4	F4F	ttC	ttT	1	1	B.1.1.466	0.008696
E	4	F4F	ttC	ttT	1	1	B.1.1.507	0.008696
E	4	F4F	ttC	ttT	1	1	B.1.1.51	0.001718
E	4	F4L	Ttc	Ctc	1	1	B.1.1.517	0.006803
E	4	F4F	ttC	ttT	1	1	B.1.1.518	0.006329
E	4	F4F	ttC	ttT	1	1	B.1.1.525	0.005464
E	4	F4Y	tTc	tAc	1	1	B.1.1.7	0.000001
E	4	F4F	ttC	ttT	1	1	B.1.1.70	0.000341
E	4	F4F	ttC	ttT	1	1	B.1.1.71	0.006061
E	4	F4F	ttC	ttT	1	1	B.1.128	0.000635
E	4	F4F	ttC	ttT	1	1	B.1.131	0.008772
E	4	F4F	ttC	ttT	1	1	B.1.157	0.002985
E	4	F4F	ttC	ttT	1	1	B.1.160.14	0.002119
E	4	F4F	ttC	ttT	1	1	B.1.170	0.00431
E	4	F4F	ttC	ttT	1	1	B.1.177.16	0.000664
E	4	F4F	ttC	ttT	1	1	B.1.177.23	0.003236
E	4	F4F	ttC	ttT	1	1	B.1.177.44	0.000519
E	4	F4F	ttC	ttT	1	1	B.1.177.54	0.000606
E	4	F4F	ttC	ttT	1	1	B.1.177.56	0.000668
E	4	F4L	ttC	ttA	1	1	B.1.177.57	0.000281
E	4	F4F	ttC	ttT	1	1	B.1.177.58	0.001332
E	4	F4F	ttC	ttT	1	1	B.1.177.69	0.001484
E	4	F4F	ttC	ttT	1	1	B.1.177.7	0.000165
E	4	F4F	ttC	ttT	1	1	B.1.177.76	0.002494
E	4	F4F	ttC	ttT	1	1	B.1.177.80	0.001912
E	4	F4F	ttC	ttT	1	1	B.1.177.83	0.001481
E	4	F4S	tTc	tCc	1	1	B.1.2	0.000009
E	4	F4F	ttC	ttT	1	1	B.1.206	0.000816
E	4	F4del	TTC	---	1	1	B.1.218	0.005155
E	4	F4F	ttC	ttT	1	1	B.1.219	0.009434
E	4	F4F	ttC	ttT	1	1	B.1.239	0.001221
E	4	F4del1	ttC	tt-	1	1	B.1.243	0.00007
E	4	F4L	Ttc	Ctc	1	1	B.1.258	0.000067
E	4	F4I	Ttc	Atc	1	1	B.1.258.10	0.011364
E	4	F4F	ttC	ttT	1	1	B.1.260	0.003344
E	4	F4F	ttC	ttT	1	1	B.1.264	0.012346
E	4	F4F	ttC	ttT	1	1	B.1.340	0.004292
E	4	F4F	ttC	ttT	1	1	B.1.349	0.000715
E	4	F4L	ttC	ttG	1	1	B.1.351	0.00003
E	4	F4F	ttC	ttT	1	1	B.1.351.3	0.000876
E	4	F4L	Ttc	Ctc	1	1	B.1.36	0.000146
E	4	F4F	ttC	ttT	1	1	B.1.36.22	0.001208
E	4	F4F	ttC	ttT	1	1	B.1.36.26	0.002857
E	4	F4F	ttC	ttT	1	1	B.1.36.8	0.001
E	4	F4F	ttC	ttT	1	1	B.1.383	0.009009
E	4	F4F	ttC	ttT	1	1	B.1.428	0.00102
E	4	F4F	ttC	ttT	1	1	B.1.433	0.003195
E	4	F4L	ttC	ttA	1	1	B.1.474	0.001901
E	4	F4F	ttC	ttT	1	1	B.1.497	0.000315
E	4	F4F	ttC	ttT	1	1	B.1.517	0.000427
E	4	F4F	ttC	ttT	1	1	B.1.523	0.002451
E	4	F4L	Ttc	Ctc	1	1	B.1.526	0.000024
E	4	F4F	ttC	ttT	1	1	B.1.545	0.014493
E	4	F4F	ttC	ttT	1	1	B.1.549	0.007194
E	4	F4F	ttC	ttT	1	1	B.1.570	0.002941
E	4	F4F	ttC	ttT	1	1	B.1.575	0.000303
E	4	F4F	ttC	ttT	1	1	B.1.582	0.000491
E	4	F4I	Ttc	Atc	1	1	B.1.587	0.001898
E	4	F4L	ttC	ttA	1	1	B.1.596	0.000087
E	4	F4F	ttC	ttT	1	1	B.1.619	0.000871
E	4	F4F	ttC	ttT	1	1	B.1.631	0.003367
E	4	F4F	ttC	ttT	1	1	B.1.634	0.003425
E	4	F4F	ttC	ttT	1	1	B.23	0.002924
E	4	F4F	ttC	ttT	1	1	B.6	0.00091
E	4	F4F	ttC	ttT	1	1	C.1	0.002392
E	4	F4L	Ttc	Ctc	1	1	C.30	0.001727
E	4	F4F	ttC	ttT	1	1	C.32	0.023256
E	4	F4F	ttC	ttT	1	1	C.35	0.000774
E	4	F4F	ttC	ttT	1	1	C.4	0.01
E	4	F4F	ttC	ttT	1	1	C.8	0.004464
E	4	F4S	tTc	tCc	1	1	D.2	0.000075
E	4	F4F	ttC	ttT	1	1	D.5	0.004975
E	4	F4F	ttC	ttT	1	1	P.1.1	0.000318
E	4	F4L	Ttc	Ctc	1	1	P.1.14	0.000048
E	4	F4S	tTc	tCc	1	1	P.1.15	0.000232
E	4	F4F	ttC	ttT	1	1	P.1.2	0.001156
E	4	F4F	ttC	ttT	1	1	P.7	0.004367
E	4	F4F	ttC	ttT	1	1	Q.3	0.000145
E	4	F4L	Ttc	Ctc	1	1	R.1	0.00009
E	4	F4F	ttC	ttT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.