CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 30

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E30T30InonsynaCaaTa990990126332-26334
E30T30AnonsynAcaGca4244230.99764226332-26334
E30T30AnonsynAcAGcG42410.0023584926332-26334
E30T30TsynacAacG213950.44600926332-26334
E30T30TsynacAacC213900.42253526332-26334
E30T30TsynacAacT213280.13145526332-26334
E30T30deldelACA---9797126332-26334
E30T30GnonsynACaGGa1313126332-26334
E30T30SnonsynAcaTca11100.90909126332-26334
E30T30SnonsynAcATcT1110.090909126332-26334
E30T30RnonsynaCaaGa55126332-26334
E30T30KnonsynaCaaAa430.7526332-26334
E30T30LnonsynACaCTa420.526332-26334
E30T30LnonsynACaTTa420.526332-26334
E30T30KnonsynaCAaAG410.2526332-26334
E30T30VnonsynACaGTa320.66666726332-26334
E30T30VnonsynACAGTG310.33333326332-26334
E30T30MnonsynaCAaTG22126332-26334
E30T30del1delacAac-11126332-26334
E30T30del2delaCAa--11126332-26334
E30T30XnonsynACaTAa11126332-26334
E30T30NnonsynaCAaAT11126332-26334

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E30T30IaCaaTa990990All0.000189
E30T30AAcaGca423424All0.000081
E30T30AAcAGcG1424All0
E30T30AAcaGca265265B.1.1.70.000237
E30T30TacAacG95213All0.000018
E30T30TacAacC90213All0.000017
E30T30TacAacT28213All0.000005
E30T30IaCaaTa196196B.1.1.70.000175
E30T30delACA---9797All0.000019
E30T30IaCaaTa7171B.10.00065
E30T30IaCaaTa7171B.1.3510.002111
E30T30IaCaaTa5353B.1.20.000467
E30T30TacAacC4047B.1.1.70.000036
E30T30TacAacG547B.1.1.70.000004
E30T30TacAacT247B.1.1.70.000002
E30T30IaCaaTa4444B.1.10.000798
E30T30AAcaGca4242B.1.2980.088795
E30T30IaCaaTa4141B.1.6161
E30T30IaCaaTa3737B.1.1600.001154
E30T30IaCaaTa3737B.1.1770.000487
E30T30TacAacG2835B.1.617.20.000105
E30T30TacAacC635B.1.617.20.000023
E30T30TacAacT135B.1.617.20.000004
E30T30IaCaaTa3333AY.40.000051
E30T30AAcaGca3030AY.250.00018
E30T30IaCaaTa3030B.1.2580.001996
E30T30TacAacG2125AY.1020.000557
E30T30TacAacT325AY.1020.00008
E30T30TacAacC125AY.1020.000027
E30T30IaCaaTa1818B.1.2210.001279
E30T30TacAacC816AY.40.000012
E30T30TacAacT616AY.40.000009
E30T30TacAacG216AY.40.000003
E30T30IaCaaTa1616B.1.617.20.00006
E30T30GACaGGa1313All0.000002
E30T30IaCaaTa1212AY.430.000053
E30T30IaCaaTa1212P.10.000189
E30T30delACA---1212P.10.000189
E30T30SAcaTca1011All0.000002
E30T30SAcATcT111All0
E30T30TacAacC1111AY.290.000174
E30T30IaCaaTa1111B.1.1.2840.001181
E30T30IaCaaTa1111B.1.2430.000765
E30T30TacAacG811B.1.3510.000238
E30T30TacAacC311B.1.3510.000089
E30T30GACaGGa1111P.10.000173
E30T30IaCaaTa1010AY.30.000099
E30T30IaCaaTa1010B0.001278
E30T30AAcaGca1010B.1.20.000088
E30T30IaCaaTa1010B.1.4290.000235
E30T30AAcaGca99B.1.10.000163
E30T30delACA---99B.1.1.70.000008
E30T30delACA---99P.1.150.002091
E30T30delACA---88B.1.6210.000708
E30T30AAcaGca88P.10.000126
E30T30delACA---77AY.250.000042
E30T30TacAacC47AY.250.000024
E30T30TacAacG37AY.250.000018
E30T30AAcaGca77AY.40.000011
E30T30delACA---77B.10.000064
E30T30IaCaaTa77B.1.1.2140.000388
E30T30IaCaaTa77B.1.4860.777778
E30T30AAcaGca66AY.1030.000037
E30T30TacAacG36AY.1030.000019
E30T30TacAacT26AY.1030.000012
E30T30TacAacC16AY.1030.000006
E30T30AAcaGca66B.1.1770.000079
E30T30IaCaaTa66B.1.351.20.001815
E30T30delACA---66C.370.000696
E30T30RaCaaGa55All0.000001
E30T30IaCaaTa55AY.1000.00023
E30T30IaCaaTa55AY.1030.000031
E30T30TacAacT45B.10.000037
E30T30TacAacG15B.10.000009
E30T30IaCaaTa55B.1.3200.006227
E30T30TacAacG340.166667
E30T30TacAacT140.055556
E30T30IaCaaTa44AB.10.032787
E30T30KaCaaAa34All0.000001
E30T30LACaTTa24All0
E30T30LACaCTa24All0
E30T30KaCAaAG14All0
E30T30AAcaGca44AY.3.10.000341
E30T30AAcaGca44AY.390.000099
E30T30delACA---44AY.430.000018
E30T30IaCaaTa44AY.440.000024
E30T30TacAacT34AY.440.000018
E30T30TacAacG14AY.440.000006
E30T30IaCaaTa44B.1.1.10.001307
E30T30IaCaaTa44B.1.1.5190.000159
E30T30TacAacG44B.1.4000.001716
E30T30IaCaaTa44B.1.5260.000094
E30T30IaCaaTa44D.20.0003
E30T30VACaGTa23All0
E30T30VACAGTG13All0
E30T30IaCaaTa33AY.1020.00008
E30T30IaCaaTa33AY.1110.000549
E30T30IaCaaTa33AY.250.000018
E30T30IaCaaTa33AY.390.000074
E30T30IaCaaTa33AY.46.20.001906
E30T30AAcaGca33AY.99.20.000276
E30T30IaCaaTa33B.1.1.2690.00406
E30T30IaCaaTa33B.1.1.3690.001339
E30T30IaCaaTa33B.1.1.390.001529
E30T30IaCaaTa33B.1.1650.035714
E30T30IaCaaTa33B.1.258.160.00491
E30T30IaCaaTa33B.1.3190.009146
E30T30TacAacG33B.1.4290.000071
E30T30IaCaaTa33B.1.5960.000261
E30T30AAcaGca33B.1.617.20.000011
E30T30IaCaaTa33B.1.6210.000266
E30T30IaCaaTa33B.30.002492
E30T30AAcAGcG120.055556
E30T30VACAGTG120.055556
E30T30SAcaTca120.055556
E30T30SAcATcT120.055556
E30T30AAcaGca120.055556
E30T30VACaGTa120.055556
E30T30IaCaaTa22A0.000774
E30T30AAcaGca22A.2.50.000998
E30T30IaCaaTa22AH.30.007605
E30T30MaCAaTG22All0
E30T30TacAacC22AY.1180.000125
E30T30TacAacG22AY.120.10.000642
E30T30TacAacC22AY.200.000078
E30T30IaCaaTa22AY.230.000139
E30T30AAcaGca22AY.290.000032
E30T30IaCaaTa22AY.290.000032
E30T30IaCaaTa22AY.360.000296
E30T30delACA---22AY.390.000049
E30T30delACA---22AY.40.000003
E30T30IaCaaTa22AY.420.00008
E30T30TacAacG22AY.430.000009
E30T30IaCaaTa22AY.450.000243
E30T30IaCaaTa22AY.46.40.000329
E30T30AAcaGca22AY.50.000041
E30T30TacAacT22AY.50.000041
E30T30IaCaaTa22AY.60.000082
E30T30IaCaaTa22AY.690.000373
E30T30IaCaaTa22AY.90.000135
E30T30IaCaaTa22AY.98.10.000097
E30T30TacAacG12B.1.10.000018
E30T30TacAacT12B.1.10.000018
E30T30TacAacC22B.1.1.1530.002191
E30T30IaCaaTa22B.1.1.250.001137
E30T30IaCaaTa22B.1.1.3800.019608
E30T30IaCaaTa22B.1.1.3850.008929
E30T30AAcaGca22B.1.1.5190.000079
E30T30KaCaaAa22B.1.1.70.000002
E30T30IaCaaTa22B.1.1040.00738
E30T30IaCaaTa22B.1.177.150.001262
E30T30IaCaaTa22B.1.177.170.001642
E30T30IaCaaTa22B.1.177.190.002861
E30T30IaCaaTa22B.1.177.500.00939
E30T30IaCaaTa22B.1.177.850.01087
E30T30LACaCTa22B.1.20.000018
E30T30AAcaGca22B.1.2080.08
E30T30TacAacG22B.1.2210.000142
E30T30IaCaaTa22B.1.2220.003384
E30T30IaCaaTa22B.1.2400.000431
E30T30SAcaTca22B.1.258.170.000208
E30T30IaCaaTa22B.1.3320.006993
E30T30IaCaaTa22B.1.3430.041667
E30T30IaCaaTa22B.1.360.000292
E30T30IaCaaTa22B.1.4000.000858
E30T30IaCaaTa22B.1.4270.000101
E30T30RaCaaGa22B.1.4620.014493
E30T30IaCaaTa22B.1.4970.00063
E30T30IaCaaTa22B.1.5170.000854
E30T30delACA---22B.1.5250.000226
E30T30IaCaaTa22B.1.5950.000522
E30T30SAcaTca22B.1.617.20.000008
E30T30IaCaaTa22B.290.007018
E30T30IaCaaTa22B.40.004415
E30T30IaCaaTa22B.550.0059
E30T30IaCaaTa22B.580.020408
E30T30delACA---22C.37.10.005236
E30T30TacAacC22P.10.000032
E30T30AAcaGca22Q.10.000253
E30T30MaCAaTG110.055556
E30T30IaCaaTa110.055556
E30T30SAcaTca11A0.000387
E30T30IaCaaTa11A.20.000662
E30T30IaCaaTa11A.30.002096
E30T30IaCaaTa11A.50.001923
E30T30LACaTTa11AB.10.008197
E30T30VACaGTa11AB.10.008197
E30T30IaCaaTa11AD.20.000219
E30T30IaCaaTa11AE.80.000489
E30T30del2aCAa--11All0
E30T30XACaTAa11All0
E30T30del1acAac-11All0
E30T30NaCAaAT11All0
E30T30IaCaaTa11AP.10.001502
E30T30IaCaaTa11AU.10.001266
E30T30delACA---11AY.100.00053
E30T30AAcaGca11AY.1020.000027
E30T30KaCAaAG11AY.1020.000027
E30T30IaCaaTa11AY.1130.000142
E30T30delACA---11AY.1180.000063
E30T30IaCaaTa11AY.1190.000035
E30T30AAcaGca11AY.120.10.000321
E30T30IaCaaTa11AY.120.2.10.000498
E30T30IaCaaTa11AY.16.10.00047
E30T30IaCaaTa11AY.20.000356
E30T30GACaGGa11AY.200.000039
E30T30IaCaaTa11AY.200.000039
E30T30AAcaGca11AY.230.00007
E30T30TacAacG11AY.260.000028
E30T30delACA---11AY.260.000028
E30T30IaCaaTa11AY.260.000028
E30T30TacAacC11AY.340.000097
E30T30delACA---11AY.34.10.00051
E30T30TacAacG11AY.350.000233
E30T30TacAacT11AY.390.000025
E30T30IaCaaTa11AY.39.10.00004
E30T30del1acAac-11AY.40.000002
E30T30del2aCAa--11AY.40.000002
E30T30RaCaaGa11AY.4.20.000022
E30T30SAcaTca11AY.4.2.10.000149
E30T30AAcaGca11AY.440.000006
E30T30IaCaaTa11AY.46.60.000072
E30T30TacAacC11AY.470.000031
E30T30IaCaaTa11AY.470.000031
E30T30IaCaaTa11AY.50.000021
E30T30IaCaaTa11AY.5.30.000337
E30T30delACA---11AY.540.000095
E30T30IaCaaTa11AY.540.000095
E30T30TacAacG11AY.590.00053
E30T30TacAacC11AY.610.000105
E30T30IaCaaTa11AY.620.000436
E30T30delACA---11AY.680.000274
E30T30IaCaaTa11AY.7.10.000113
E30T30IaCaaTa11AY.7.20.000559
E30T30IaCaaTa11AY.710.000475
E30T30IaCaaTa11AY.740.000116
E30T30delACA---11AY.750.000056
E30T30IaCaaTa11AY.790.001211
E30T30delACA---11AY.90.000068
E30T30TacAacC11AY.9.10.000084
E30T30IaCaaTa11AY.9.20.000037
E30T30delACA---11AY.950.000761
E30T30SAcaTca11B0.000128
E30T30AAcaGca11B.10.000009
E30T30KaCaaAa11B.10.000009
E30T30NaCAaAT11B.10.000009
E30T30delACA---11B.1.10.000018
E30T30TacAacC11B.1.1.10.000327
E30T30IaCaaTa11B.1.1.1290.009174
E30T30IaCaaTa11B.1.1.1410.002012
E30T30XACaTAa11B.1.1.1530.001095
E30T30IaCaaTa11B.1.1.1700.001247
E30T30IaCaaTa11B.1.1.1860.003436
E30T30IaCaaTa11B.1.1.2070.001182
E30T30IaCaaTa11B.1.1.2160.00089
E30T30IaCaaTa11B.1.1.2250.007194
E30T30delACA---11B.1.1.270.00565
E30T30IaCaaTa11B.1.1.2770.000759
E30T30IaCaaTa11B.1.1.3170.000412
E30T30TacAacG11B.1.1.3200.018182
E30T30IaCaaTa11B.1.1.3360.016667
E30T30IaCaaTa11B.1.1.340.013158
E30T30IaCaaTa11B.1.1.370.000193
E30T30IaCaaTa11B.1.1.4010.066667
E30T30delACA---11B.1.1.4090.002833
E30T30IaCaaTa11B.1.1.4170.002703
E30T30IaCaaTa11B.1.1.4640.001473
E30T30IaCaaTa11B.1.1.4820.023256
E30T30delACA---11B.1.1.5190.00004
E30T30SAcaTca11B.1.1.70.000001
E30T30IaCaaTa11B.1.1460.004237
E30T30IaCaaTa11B.1.1590.012195
E30T30AAcaGca11B.1.1600.000031
E30T30delACA---11B.1.1600.000031
E30T30IaCaaTa11B.1.160.160.000929
E30T30delACA---11B.1.1770.000013
E30T30TacAacG11B.1.1770.000013
E30T30IaCaaTa11B.1.177.180.00116
E30T30IaCaaTa11B.1.177.210.000076
E30T30IaCaaTa11B.1.177.230.003236
E30T30AAcaGca11B.1.177.30.007634
E30T30SAcaTca11B.1.177.320.00135
E30T30IaCaaTa11B.1.177.40.000211
E30T30IaCaaTa11B.1.177.450.000381
E30T30IaCaaTa11B.1.177.460.000918
E30T30IaCaaTa11B.1.177.530.002392
E30T30IaCaaTa11B.1.177.70.000165
E30T30IaCaaTa11B.1.177.810.000189
E30T30IaCaaTa11B.1.177.860.000183
E30T30IaCaaTa11B.1.177.90.001332
E30T30IaCaaTa11B.1.1790.003759
E30T30TacAacC11B.1.20.000009
E30T30delACA---11B.1.2180.005155
E30T30IaCaaTa11B.1.2320.000537
E30T30IaCaaTa11B.1.2340.000132
E30T30TacAacC11B.1.2390.001221
E30T30IaCaaTa11B.1.2410.000812
E30T30AAcaGca11B.1.2430.00007
E30T30delACA---11B.1.2580.000067
E30T30IaCaaTa11B.1.258.190.007092
E30T30RaCaaGa11B.1.258.70.001912
E30T30IaCaaTa11B.1.2790.000514
E30T30IaCaaTa11B.1.30.002618
E30T30TacAacC11B.1.3110.000275
E30T30IaCaaTa11B.1.3110.000275
E30T30IaCaaTa11B.1.3460.001311
E30T30IaCaaTa11B.1.351.30.000876
E30T30IaCaaTa11B.1.3560.001727
E30T30delACA---11B.1.360.000146
E30T30IaCaaTa11B.1.36.100.004785
E30T30IaCaaTa11B.1.36.180.00042
E30T30IaCaaTa11B.1.36.290.000517
E30T30TacAacT11B.1.36.390.002217
E30T30IaCaaTa11B.1.36.80.001
E30T30IaCaaTa11B.1.3890.001002
E30T30IaCaaTa11B.1.3960.000706
E30T30AAcaGca11B.1.4270.00005
E30T30IaCaaTa11B.1.438.10.000107
E30T30IaCaaTa11B.1.4390.005917
E30T30MaCAaTG11B.1.4970.000315
E30T30IaCaaTa11B.1.5090.000866
E30T30IaCaaTa11B.1.5250.000113
E30T30AAcaGca11B.1.5260.000024
E30T30IaCaaTa11B.1.5580.004566
E30T30IaCaaTa11B.1.5670.003333
E30T30IaCaaTa11B.1.5760.000907
E30T30IaCaaTa11B.1.5820.000491
E30T30IaCaaTa11B.1.5880.00091
E30T30AAcaGca11B.1.5960.000087
E30T30IaCaaTa11B.1.5990.00365
E30T30delACA---11B.1.6090.000479
E30T30AAcaGca11B.1.617.10.000129
E30T30delACA---11B.1.617.10.000129
E30T30delACA---11B.1.617.20.000004
E30T30IaCaaTa11B.1.6230.000536
E30T30delACA---11B.1.6270.00202
E30T30IaCaaTa11B.1.6370.000073
E30T30delACA---11B.1.6380.052632
E30T30IaCaaTa11B.270.015385
E30T30TacAacG11B.40.002208
E30T30IaCaaTa11B.470.020408
E30T30delACA---11B.60.00091
E30T30IaCaaTa11C.110.010638
E30T30IaCaaTa11C.30.007634
E30T30IaCaaTa11C.300.001727
E30T30IaCaaTa11C.370.000116
E30T30TacAacT11D.20.000075
E30T30RaCaaGa11D.20.000075
E30T30AAcaGca11N.40.004255
E30T30LACaTTa11P.10.000016
E30T30GACaGGa11P.1.10.000318
E30T30IaCaaTa11P.1.10.000318
E30T30delACA---11P.1.130.000898
E30T30IaCaaTa11P.1.140.000048
E30T30delACA---11P.1.70.000319
E30T30delACA---11Q.20.000613
E30T30IaCaaTa11R.10.00009