CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 25

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
E	25	V25V		syn	gtA	gtG	3543	3390	0.956816	26317-26319
E	25	V25V		syn	gtA	gtT	3543	125	0.0352808	26317-26319
E	25	V25V		syn	gtA	gtC	3543	28	0.00790291	26317-26319
E	25	V25del		del	GTA	---	85	85	1	26317-26319
E	25	V25A		nonsyn	gTa	gCa	73	72	0.986301	26317-26319
E	25	V25A		nonsyn	gTA	gCG	73	1	0.0136986	26317-26319
E	25	V25T		nonsyn	GTA	ACG	15	13	0.866667	26317-26319
E	25	V25T		nonsyn	GTa	ACa	15	2	0.133333	26317-26319
E	25	V25L		nonsyn	Gta	Tta	12	9	0.75	26317-26319
E	25	V25L		nonsyn	Gta	Cta	12	2	0.166667	26317-26319
E	25	V25L		nonsyn	GtA	TtG	12	1	0.0833333	26317-26319
E	25	V25del1		del	gtA	gt-	9	8	0.888889	26317-26319
E	25	V25del1		del	Gta	-ta	9	1	0.111111	26317-26319
E	25	V25I		nonsyn	Gta	Ata	8	6	0.75	26317-26319
E	25	V25I		nonsyn	GtA	AtT	8	2	0.25	26317-26319
E	25	V25del2		del	gTA	g--	3	3	1	26317-26319
E	25	V25M		nonsyn	GtA	AtG	3	3	1	26317-26319
E	25	V25E		nonsyn	gTa	gAa	2	2	1	26317-26319
E	25	V25S		nonsyn	GTa	TCa	2	1	0.5	26317-26319
E	25	V25S		nonsyn	GTA	TCG	2	1	0.5	26317-26319
E	25	V25G		nonsyn	gTA	gGT	1	1	1	26317-26319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
E	25	V25V	gtA	gtG	3390	3543	All	0.000648
E	25	V25V	gtA	gtT	125	3543	All	0.000024
E	25	V25V	gtA	gtC	28	3543	All	0.000005
E	25	V25V	gtA	gtG	957	957	B.1.389	0.958918
E	25	V25V	gtA	gtG	791	818	AY.4	0.001231
E	25	V25V	gtA	gtC	14	818	AY.4	0.000022
E	25	V25V	gtA	gtT	13	818	AY.4	0.00002
E	25	V25V	gtA	gtG	218	232	B.1.1.7	0.000195
E	25	V25V	gtA	gtT	14	232	B.1.1.7	0.000013
E	25	V25V	gtA	gtG	222	222	B.1.628	0.078224
E	25	V25V	gtA	gtG	205	209	B.1	0.001878
E	25	V25V	gtA	gtT	4	209	B.1	0.000037
E	25	V25V	gtA	gtG	97	97	AY.103	0.000602
E	25	V25V	gtA	gtG	77	88	B.1.617.2	0.00029
E	25	V25V	gtA	gtT	11	88	B.1.617.2	0.000041
E	25	V25del	GTA	---	85	85	All	0.000016
E	25	V25V	gtA	gtG	78	78	B.1.2	0.000687
E	25	V25V	gtA	gtG	75	75	AY.98.1	0.003632
E	25	V25A	gTa	gCa	72	73	All	0.000014
E	25	V25A	gTA	gCG	1	73	All	0
E	25	V25V	gtA	gtG	70	70	AY.4.5	0.007524
E	25	V25V	gtA	gtG	65	65	C.36.3	0.036869
E	25	V25V	gtA	gtG	37	63	AY.44	0.000225
E	25	V25V	gtA	gtT	26	63	AY.44	0.000158
E	25	V25V	gtA	gtG	42	43	AY.25	0.000253
E	25	V25V	gtA	gtT	1	43	AY.25	0.000006
E	25	V25V	gtA	gtG	34	34	AY.102	0.000901
E	25	V25V	gtA	gtG	27	28	AY.43	0.00012
E	25	V25V	gtA	gtT	1	28	AY.43	0.000004
E	25	V25V	gtA	gtG	26	26	AY.3	0.000259
E	25	V25V	gtA	gtG	20	21	AY.39	0.000494
E	25	V25V	gtA	gtT	1	21	AY.39	0.000025
E	25	V25V	gtA	gtG	19	20	B.1.1	0.000345
E	25	V25V	gtA	gtT	1	20	B.1.1	0.000018
E	25	V25V	gtA	gtG	18	19	B.1.177	0.000237
E	25	V25V	gtA	gtT	1	19	B.1.177	0.000013
E	25	V25V	gtA	gtG	15	16	AY.20	0.000583
E	25	V25V	gtA	gtT	1	16	AY.20	0.000039
E	25	V25T	GTA	ACG	13	15	All	0.000002
E	25	V25T	GTa	ACa	2	15	All	0
E	25	V25del	GTA	---	14	14	P.1	0.000221
E	25	V25A	gTa	gCa	13	13	B.1.1.44	0.031325
E	25	V25V	gtA	gtG	12	13	B.1.258	0.000799
E	25	V25V	gtA	gtT	1	13	B.1.258	0.000067
E	25	V25L	Gta	Tta	9	12	All	0.000002
E	25	V25L	Gta	Cta	2	12	All	0
E	25	V25L	GtA	TtG	1	12	All	0
E	25	V25V	gtA	gtG	10	12	AY.29	0.000158
E	25	V25V	gtA	gtT	1	12	AY.29	0.000016
E	25	V25V	gtA	gtC	1	12	AY.29	0.000016
E	25	V25V	gtA	gtG	10	10	AY.47	0.000311
E	25	V25V	gtA	gtC	8	10	AY.85	0.003417
E	25	V25V	gtA	gtG	1	10	AY.85	0.000427
E	25	V25V	gtA	gtT	1	10	AY.85	0.000427
E	25	V25del	GTA	---	10	10	B.1.621	0.000885
E	25	V25V	gtA	gtT	10	10	B.40	0.003643
E	25	V25V	gtA	gtG	6	10	P.1.14	0.000287
E	25	V25V	gtA	gtT	4	10	P.1.14	0.000191
E	25	V25del1	gtA	gt-	8	9	All	0.000002
E	25	V25del1	Gta	-ta	1	9	All	0
E	25	V25V	gtA	gtG	9	9	AY.4.2	0.000195
E	25	V25A	gTa	gCa	9	9	B.1.1.7	0.000008
E	25	V25V	gtA	gtG	9	9	B.1.429	0.000212
E	25	V25V	gtA	gtG	9	9	P.1	0.000142
E	25	V25del	GTA	---	9	9	P.1.15	0.002091
E	25	V25I	Gta	Ata	6	8	All	0.000001
E	25	V25I	GtA	AtT	2	8	All	0
E	25	V25V	gtA	gtG	7	8	AY.100	0.000322
E	25	V25V	gtA	gtT	1	8	AY.100	0.000046
E	25	V25A	gTa	gCa	8	8	AY.25	0.000048
E	25	V25V	gtA	gtG	7	8	AY.5	0.000145
E	25	V25V	gtA	gtC	1	8	AY.5	0.000021
E	25	V25V	gtA	gtG	8	8	AY.88	0.007073
E	25	V25V	gtA	gtG	7	7	AY.42	0.000282
E	25	V25V	gtA	gtG	6	7	AY.9.2	0.00022
E	25	V25V	gtA	gtT	1	7	AY.9.2	0.000037
E	25	V25del	GTA	---	7	7	B.1	0.000064
E	25	V25V	gtA	gtG	7	7	B.1.177.77	0.005084
E	25	V25V	gtA	gtG	6	6	AY.107	0.002796
E	25	V25del1	gtA	gt-	6	6	AY.85	0.002563
E	25	V25V	gtA	gtG	6	6	B.1.1.216	0.005343
E	25	V25del	GTA	---	6	6	C.37	0.000696
E	25	V25V	gtA	gtG	3	5		0.166667
E	25	V25V	gtA	gtT	2	5		0.111111
E	25	V25V	gtA	gtG	5	5	AY.23	0.000349
E	25	V25A	gTa	gCa	5	5	AY.4	0.000008
E	25	V25V	gtA	gtG	5	5	B.1.1.217	0.018182
E	25	V25V	gtA	gtT	5	5	B.1.1.263	0.007788
E	25	V25V	gtA	gtG	5	5	B.1.1.318	0.001509
E	25	V25V	gtA	gtG	4	5	B.1.621	0.000354
E	25	V25V	gtA	gtC	1	5	B.1.621	0.000089
E	25	V25A	gTa	gCa	5	5	B.39	0.011655
E	25	V25del	GTA	---	4	4	AY.25	0.000024
E	25	V25T	GTA	ACG	4	4	B.1.1.7	0.000004
E	25	V25V	gtA	gtG	4	4	B.1.160	0.000125
E	25	V25V	gtA	gtG	4	4	B.1.427	0.000202
E	25	V25V	gtA	gtG	4	4	B.1.525	0.000453
E	25	V25V	gtA	gtG	4	4	B.1.596	0.000349
E	25	V25M	GtA	AtG	3	3		0.166667
E	25	V25I	GtA	AtT	2	3		0.111111
E	25	V25I	Gta	Ata	1	3		0.055556
E	25	V25M	GtA	AtG	3	3	All	0.000001
E	25	V25del2	gTA	g--	3	3	All	0.000001
E	25	V25V	gtA	gtG	2	3	AY.113	0.000285
E	25	V25V	gtA	gtT	1	3	AY.113	0.000142
E	25	V25V	gtA	gtG	2	3	AY.118	0.000125
E	25	V25V	gtA	gtT	1	3	AY.118	0.000063
E	25	V25V	gtA	gtG	3	3	AY.120.1	0.000963
E	25	V25V	gtA	gtG	3	3	AY.14	0.000264
E	25	V25V	gtA	gtG	2	3	AY.26	0.000057
E	25	V25V	gtA	gtT	1	3	AY.26	0.000028
E	25	V25V	gtA	gtG	2	3	AY.3.1	0.000171
E	25	V25V	gtA	gtT	1	3	AY.3.1	0.000085
E	25	V25del	GTA	---	3	3	AY.43	0.000013
E	25	V25V	gtA	gtG	3	3	AY.45	0.000365
E	25	V25V	gtA	gtG	3	3	AY.46	0.000312
E	25	V25V	gtA	gtG	3	3	AY.57	0.001969
E	25	V25V	gtA	gtG	3	3	AY.61	0.000314
E	25	V25V	gtA	gtG	3	3	AY.64	0.001786
E	25	V25V	gtA	gtG	3	3	AY.74	0.000347
E	25	V25V	gtA	gtG	2	3	AY.75	0.000112
E	25	V25V	gtA	gtT	1	3	AY.75	0.000056
E	25	V25A	gTa	gCa	3	3	AY.9.2	0.00011
E	25	V25V	gtA	gtG	3	3	AY.98	0.000237
E	25	V25V	gtA	gtT	3	3	B	0.000383
E	25	V25T	GTA	ACG	3	3	B.1	0.000027
E	25	V25del	GTA	---	3	3	B.1.1.7	0.000003
E	25	V25V	gtA	gtG	3	3	B.1.241	0.002435
E	25	V25V	gtA	gtG	3	3	B.1.243	0.000209
E	25	V25V	gtA	gtG	3	3	B.1.36.29	0.001552
E	25	V25V	gtA	gtC	2	3	B.1.362	0.003082
E	25	V25V	gtA	gtG	1	3	B.1.362	0.001541
E	25	V25V	gtA	gtT	2	3	B.1.617.1	0.000258
E	25	V25V	gtA	gtG	1	3	B.1.617.1	0.000129
E	25	V25V	gtA	gtG	3	3	C.37	0.000348
E	25	V25del	GTA	---	2	2		0.111111
E	25	V25S	GTa	TCa	1	2		0.055556
E	25	V25S	GTA	TCG	1	2		0.055556
E	25	V25L	Gta	Tta	1	2		0.055556
E	25	V25L	GtA	TtG	1	2		0.055556
E	25	V25T	GTA	ACG	1	2		0.055556
E	25	V25A	gTa	gCa	1	2		0.055556
E	25	V25T	GTa	ACa	1	2		0.055556
E	25	V25A	gTA	gCG	1	2		0.055556
E	25	V25V	gtA	gtG	2	2	A.1	0.000564
E	25	V25E	gTa	gAa	2	2	All	0
E	25	V25S	GTA	TCG	1	2	All	0
E	25	V25S	GTa	TCa	1	2	All	0
E	25	V25A	gTa	gCa	2	2	AY.102	0.000053
E	25	V25V	gtA	gtG	2	2	AY.119	0.000071
E	25	V25V	gtA	gtG	2	2	AY.13	0.000322
E	25	V25del	GTA	---	2	2	AY.26	0.000057
E	25	V25del	GTA	---	2	2	AY.39	0.000049
E	25	V25A	gTa	gCa	2	2	AY.4.2.1	0.000298
E	25	V25L	Gta	Tta	2	2	AY.44	0.000012
E	25	V25V	gtA	gtT	1	2	AY.46.6	0.000072
E	25	V25V	gtA	gtG	1	2	AY.46.6	0.000072
E	25	V25V	gtA	gtG	1	2	AY.5.4	0.000277
E	25	V25V	gtA	gtT	1	2	AY.5.4	0.000277
E	25	V25A	gTa	gCa	2	2	AY.63	0.000774
E	25	V25V	gtA	gtG	2	2	AY.9.1	0.000167
E	25	V25V	gtA	gtT	2	2	AY.92	0.000575
E	25	V25A	gTa	gCa	2	2	AY.99.2	0.000184
E	25	V25A	gTa	gCa	2	2	B.1	0.000018
E	25	V25V	gtA	gtG	2	2	B.1.1.232	0.00363
E	25	V25V	gtA	gtG	2	2	B.1.1.416	0.00181
E	25	V25V	gtA	gtG	2	2	B.1.1.432	0.002532
E	25	V25V	gtA	gtG	2	2	B.1.1.519	0.000079
E	25	V25V	gtA	gtG	2	2	B.1.177.15	0.001262
E	25	V25V	gtA	gtG	2	2	B.1.177.8	0.001505
E	25	V25V	gtA	gtT	2	2	B.1.240	0.000431
E	25	V25V	gtA	gtG	1	2	B.1.351	0.00003
E	25	V25V	gtA	gtT	1	2	B.1.351	0.00003
E	25	V25V	gtA	gtG	2	2	B.1.420	0.020833
E	25	V25V	gtA	gtT	1	2	B.1.466.2	0.000391
E	25	V25V	gtA	gtG	1	2	B.1.466.2	0.000391
E	25	V25del	GTA	---	2	2	B.1.525	0.000226
E	25	V25V	gtA	gtG	2	2	B.1.526	0.000047
E	25	V25del	GTA	---	2	2	C.37.1	0.005236
E	25	V25V	gtA	gtG	2	2	P.1.12	0.000968
E	25	V25V	gtA	gtG	2	2	P.2	0.000373
E	25	V25V	gtA	gtG	2	2	Q.1	0.000253
E	25	V25A	gTa	gCa	2	2	Q.4	0.00091
E	25	V25V	gtA	gtG	2	2	R.1	0.00018
E	25	V25V	gtA	gtG	1	1	A	0.000387
E	25	V25V	gtA	gtG	1	1	A.2.5.2	0.001572
E	25	V25G	gTA	gGT	1	1	All	0
E	25	V25del	GTA	---	1	1	AY.10	0.00053
E	25	V25V	gtA	gtG	1	1	AY.101	0.00049
E	25	V25V	gtA	gtT	1	1	AY.106	0.000335
E	25	V25V	gtA	gtG	1	1	AY.114	0.000231
E	25	V25del	GTA	---	1	1	AY.118	0.000063
E	25	V25V	gtA	gtG	1	1	AY.12	0.000316
E	25	V25I	Gta	Ata	1	1	AY.120	0.000037
E	25	V25V	gtA	gtG	1	1	AY.120	0.000037
E	25	V25I	Gta	Ata	1	1	AY.121	0.000135
E	25	V25V	gtA	gtG	1	1	AY.16.1	0.00047
E	25	V25L	Gta	Tta	1	1	AY.23	0.00007
E	25	V25V	gtA	gtG	1	1	AY.24	0.000431
E	25	V25del1	gtA	gt-	1	1	AY.29	0.000016
E	25	V25L	Gta	Tta	1	1	AY.3	0.00001
E	25	V25V	gtA	gtG	1	1	AY.33	0.000067
E	25	V25V	gtA	gtG	1	1	AY.34	0.000097
E	25	V25del	GTA	---	1	1	AY.34.1	0.00051
E	25	V25V	gtA	gtG	1	1	AY.36	0.000148
E	25	V25V	gtA	gtC	1	1	AY.38	0.000499
E	25	V25L	Gta	Tta	1	1	AY.4	0.000002
E	25	V25I	Gta	Ata	1	1	AY.4	0.000002
E	25	V25del	GTA	---	1	1	AY.4	0.000002
E	25	V25L	Gta	Cta	1	1	AY.42	0.00004
E	25	V25A	gTa	gCa	1	1	AY.43	0.000004
E	25	V25T	GTa	ACa	1	1	AY.44	0.000006
E	25	V25V	gtA	gtG	1	1	AY.46.1	0.001027
E	25	V25V	gtA	gtG	1	1	AY.46.4	0.000165
E	25	V25A	gTa	gCa	1	1	AY.46.6	0.000072
E	25	V25del	GTA	---	1	1	AY.54	0.000095
E	25	V25V	gtA	gtT	1	1	AY.58	0.000907
E	25	V25V	gtA	gtG	1	1	AY.67	0.000464
E	25	V25V	gtA	gtG	1	1	AY.68	0.000274
E	25	V25del	GTA	---	1	1	AY.68	0.000274
E	25	V25V	gtA	gtG	1	1	AY.7	0.000196
E	25	V25V	gtA	gtG	1	1	AY.7.2	0.000559
E	25	V25del	GTA	---	1	1	AY.75	0.000056
E	25	V25V	gtA	gtG	1	1	AY.75.1	0.00018
E	25	V25del2	gTA	g--	1	1	AY.82	0.001357
E	25	V25E	gTa	gAa	1	1	AY.85	0.000427
E	25	V25V	gtA	gtG	1	1	AY.9	0.000068
E	25	V25A	gTa	gCa	1	1	AY.91	0.00073
E	25	V25del	GTA	---	1	1	AY.95	0.000761
E	25	V25V	gtA	gtG	1	1	AY.95	0.000761
E	25	V25V	gtA	gtG	1	1	AY.99.2	0.000092
E	25	V25I	Gta	Ata	1	1	AY.99.2	0.000092
E	25	V25L	Gta	Tta	1	1	B.1	0.000009
E	25	V25T	GTA	ACG	1	1	B.1.1	0.000018
E	25	V25del	GTA	---	1	1	B.1.1	0.000018
E	25	V25A	gTa	gCa	1	1	B.1.1	0.000018
E	25	V25V	gtA	gtG	1	1	B.1.1.1	0.000327
E	25	V25V	gtA	gtG	1	1	B.1.1.134	0.011364
E	25	V25V	gtA	gtG	1	1	B.1.1.138	0.006061
E	25	V25V	gtA	gtG	1	1	B.1.1.176	0.000439
E	25	V25V	gtA	gtG	1	1	B.1.1.207	0.001182
E	25	V25A	gTa	gCa	1	1	B.1.1.214	0.000055
E	25	V25V	gtA	gtG	1	1	B.1.1.25	0.000569
E	25	V25V	gtA	gtG	1	1	B.1.1.306	0.000438
E	25	V25V	gtA	gtG	1	1	B.1.1.309	0.005848
E	25	V25V	gtA	gtG	1	1	B.1.1.31	0.066667
E	25	V25V	gtA	gtG	1	1	B.1.1.317	0.000412
E	25	V25V	gtA	gtT	1	1	B.1.1.326	0.001761
E	25	V25V	gtA	gtT	1	1	B.1.1.39	0.00051
E	25	V25V	gtA	gtG	1	1	B.1.1.409	0.002833
E	25	V25del	GTA	---	1	1	B.1.1.409	0.002833
E	25	V25V	gtA	gtG	1	1	B.1.1.412	0.007634
E	25	V25V	gtA	gtG	1	1	B.1.1.434	0.000349
E	25	V25L	Gta	Tta	1	1	B.1.1.464	0.001473
E	25	V25A	gTa	gCa	1	1	B.1.1.50	0.000679
E	25	V25V	gtA	gtT	1	1	B.1.1.50	0.000679
E	25	V25A	gTa	gCa	1	1	B.1.1.507	0.008696
E	25	V25V	gtA	gtG	1	1	B.1.1.525	0.005464
E	25	V25del1	Gta	-ta	1	1	B.1.1.7	0.000001
E	25	V25G	gTA	gGT	1	1	B.1.1.7	0.000001
E	25	V25del2	gTA	g--	1	1	B.1.1.7	0.000001
E	25	V25E	gTa	gAa	1	1	B.1.1.7	0.000001
E	25	V25del	GTA	---	1	1	B.1.177	0.000013
E	25	V25A	gTa	gCa	1	1	B.1.177	0.000013
E	25	V25V	gtA	gtG	1	1	B.1.177.4	0.000211
E	25	V25T	GTA	ACG	1	1	B.1.177.73	0.000566
E	25	V25V	gtA	gtG	1	1	B.1.199	0.004132
E	25	V25A	gTa	gCa	1	1	B.1.2	0.000009
E	25	V25V	gtA	gtG	1	1	B.1.208	0.04
E	25	V25del	GTA	---	1	1	B.1.218	0.005155
E	25	V25V	gtA	gtG	1	1	B.1.221	0.000071
E	25	V25A	gTa	gCa	1	1	B.1.243	0.00007
E	25	V25del	GTA	---	1	1	B.1.258	0.000067
E	25	V25A	gTa	gCa	1	1	B.1.258.17	0.000104
E	25	V25T	GTA	ACG	1	1	B.1.260	0.003344
E	25	V25V	gtA	gtG	1	1	B.1.293	0.0125
E	25	V25del2	gTA	g--	1	1	B.1.326	0.007576
E	25	V25V	gtA	gtG	1	1	B.1.346	0.001311
E	25	V25del1	gtA	gt-	1	1	B.1.351	0.00003
E	25	V25V	gtA	gtG	1	1	B.1.36	0.000146
E	25	V25V	gtA	gtG	1	1	B.1.36.1	0.00114
E	25	V25A	gTa	gCa	1	1	B.1.396	0.000706
E	25	V25V	gtA	gtG	1	1	B.1.409	0.000781
E	25	V25V	gtA	gtG	1	1	B.1.428	0.00102
E	25	V25T	GTA	ACG	1	1	B.1.456	0.003268
E	25	V25V	gtA	gtG	1	1	B.1.503	0.002488
E	25	V25A	gTa	gCa	1	1	B.1.517	0.000427
E	25	V25A	gTa	gCa	1	1	B.1.525	0.000113
E	25	V25A	gTa	gCa	1	1	B.1.526	0.000024
E	25	V25T	GTA	ACG	1	1	B.1.533	0.009615
E	25	V25V	gtA	gtG	1	1	B.1.595	0.000261
E	25	V25V	gtA	gtG	1	1	B.1.600	0.005848
E	25	V25V	gtA	gtT	1	1	B.1.609	0.000479
E	25	V25del	GTA	---	1	1	B.1.617.1	0.000129
E	25	V25I	Gta	Ata	1	1	B.1.617.2	0.000004
E	25	V25A	gTa	gCa	1	1	B.1.617.2	0.000004
E	25	V25L	Gta	Cta	1	1	B.1.617.2	0.000004
E	25	V25del	GTA	---	1	1	B.1.627	0.00202
E	25	V25V	gtA	gtG	1	1	B.1.627	0.00202
E	25	V25del	GTA	---	1	1	B.1.638	0.052632
E	25	V25V	gtA	gtG	1	1	B.6.6	0.000889
E	25	V25V	gtA	gtT	1	1	B.61	0.005747
E	25	V25L	Gta	Tta	1	1	P.1	0.000016
E	25	V25del	GTA	---	1	1	P.1.13	0.000898
E	25	V25V	gtA	gtG	1	1	P.1.15	0.000232
E	25	V25V	gtA	gtG	1	1	P.1.17	0.000162
E	25	V25del	GTA	---	1	1	P.1.7	0.000319
E	25	V25del	GTA	---	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.