CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 25

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E25V25VsyngtAgtG354333900.95681626317-26319
E25V25VsyngtAgtT35431250.035280826317-26319
E25V25VsyngtAgtC3543280.0079029126317-26319
E25V25deldelGTA---8585126317-26319
E25V25AnonsyngTagCa73720.98630126317-26319
E25V25AnonsyngTAgCG7310.013698626317-26319
E25V25TnonsynGTAACG15130.86666726317-26319
E25V25TnonsynGTaACa1520.13333326317-26319
E25V25LnonsynGtaTta1290.7526317-26319
E25V25LnonsynGtaCta1220.16666726317-26319
E25V25LnonsynGtATtG1210.083333326317-26319
E25V25del1delgtAgt-980.88888926317-26319
E25V25del1delGta-ta910.11111126317-26319
E25V25InonsynGtaAta860.7526317-26319
E25V25InonsynGtAAtT820.2526317-26319
E25V25del2delgTAg--33126317-26319
E25V25MnonsynGtAAtG33126317-26319
E25V25EnonsyngTagAa22126317-26319
E25V25SnonsynGTaTCa210.526317-26319
E25V25SnonsynGTATCG210.526317-26319
E25V25GnonsyngTAgGT11126317-26319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E25V25VgtAgtG33903543All0.000648
E25V25VgtAgtT1253543All0.000024
E25V25VgtAgtC283543All0.000005
E25V25VgtAgtG957957B.1.3890.958918
E25V25VgtAgtG791818AY.40.001231
E25V25VgtAgtC14818AY.40.000022
E25V25VgtAgtT13818AY.40.00002
E25V25VgtAgtG218232B.1.1.70.000195
E25V25VgtAgtT14232B.1.1.70.000013
E25V25VgtAgtG222222B.1.6280.078224
E25V25VgtAgtG205209B.10.001878
E25V25VgtAgtT4209B.10.000037
E25V25VgtAgtG9797AY.1030.000602
E25V25VgtAgtG7788B.1.617.20.00029
E25V25VgtAgtT1188B.1.617.20.000041
E25V25delGTA---8585All0.000016
E25V25VgtAgtG7878B.1.20.000687
E25V25VgtAgtG7575AY.98.10.003632
E25V25AgTagCa7273All0.000014
E25V25AgTAgCG173All0
E25V25VgtAgtG7070AY.4.50.007524
E25V25VgtAgtG6565C.36.30.036869
E25V25VgtAgtG3763AY.440.000225
E25V25VgtAgtT2663AY.440.000158
E25V25VgtAgtG4243AY.250.000253
E25V25VgtAgtT143AY.250.000006
E25V25VgtAgtG3434AY.1020.000901
E25V25VgtAgtG2728AY.430.00012
E25V25VgtAgtT128AY.430.000004
E25V25VgtAgtG2626AY.30.000259
E25V25VgtAgtG2021AY.390.000494
E25V25VgtAgtT121AY.390.000025
E25V25VgtAgtG1920B.1.10.000345
E25V25VgtAgtT120B.1.10.000018
E25V25VgtAgtG1819B.1.1770.000237
E25V25VgtAgtT119B.1.1770.000013
E25V25VgtAgtG1516AY.200.000583
E25V25VgtAgtT116AY.200.000039
E25V25TGTAACG1315All0.000002
E25V25TGTaACa215All0
E25V25delGTA---1414P.10.000221
E25V25AgTagCa1313B.1.1.440.031325
E25V25VgtAgtG1213B.1.2580.000799
E25V25VgtAgtT113B.1.2580.000067
E25V25LGtaTta912All0.000002
E25V25LGtaCta212All0
E25V25LGtATtG112All0
E25V25VgtAgtG1012AY.290.000158
E25V25VgtAgtT112AY.290.000016
E25V25VgtAgtC112AY.290.000016
E25V25VgtAgtG1010AY.470.000311
E25V25VgtAgtC810AY.850.003417
E25V25VgtAgtG110AY.850.000427
E25V25VgtAgtT110AY.850.000427
E25V25delGTA---1010B.1.6210.000885
E25V25VgtAgtT1010B.400.003643
E25V25VgtAgtG610P.1.140.000287
E25V25VgtAgtT410P.1.140.000191
E25V25del1gtAgt-89All0.000002
E25V25del1Gta-ta19All0
E25V25VgtAgtG99AY.4.20.000195
E25V25AgTagCa99B.1.1.70.000008
E25V25VgtAgtG99B.1.4290.000212
E25V25VgtAgtG99P.10.000142
E25V25delGTA---99P.1.150.002091
E25V25IGtaAta68All0.000001
E25V25IGtAAtT28All0
E25V25VgtAgtG78AY.1000.000322
E25V25VgtAgtT18AY.1000.000046
E25V25AgTagCa88AY.250.000048
E25V25VgtAgtG78AY.50.000145
E25V25VgtAgtC18AY.50.000021
E25V25VgtAgtG88AY.880.007073
E25V25VgtAgtG77AY.420.000282
E25V25VgtAgtG67AY.9.20.00022
E25V25VgtAgtT17AY.9.20.000037
E25V25delGTA---77B.10.000064
E25V25VgtAgtG77B.1.177.770.005084
E25V25VgtAgtG66AY.1070.002796
E25V25del1gtAgt-66AY.850.002563
E25V25VgtAgtG66B.1.1.2160.005343
E25V25delGTA---66C.370.000696
E25V25VgtAgtG350.166667
E25V25VgtAgtT250.111111
E25V25VgtAgtG55AY.230.000349
E25V25AgTagCa55AY.40.000008
E25V25VgtAgtG55B.1.1.2170.018182
E25V25VgtAgtT55B.1.1.2630.007788
E25V25VgtAgtG55B.1.1.3180.001509
E25V25VgtAgtG45B.1.6210.000354
E25V25VgtAgtC15B.1.6210.000089
E25V25AgTagCa55B.390.011655
E25V25delGTA---44AY.250.000024
E25V25TGTAACG44B.1.1.70.000004
E25V25VgtAgtG44B.1.1600.000125
E25V25VgtAgtG44B.1.4270.000202
E25V25VgtAgtG44B.1.5250.000453
E25V25VgtAgtG44B.1.5960.000349
E25V25MGtAAtG330.166667
E25V25IGtAAtT230.111111
E25V25IGtaAta130.055556
E25V25MGtAAtG33All0.000001
E25V25del2gTAg--33All0.000001
E25V25VgtAgtG23AY.1130.000285
E25V25VgtAgtT13AY.1130.000142
E25V25VgtAgtG23AY.1180.000125
E25V25VgtAgtT13AY.1180.000063
E25V25VgtAgtG33AY.120.10.000963
E25V25VgtAgtG33AY.140.000264
E25V25VgtAgtG23AY.260.000057
E25V25VgtAgtT13AY.260.000028
E25V25VgtAgtG23AY.3.10.000171
E25V25VgtAgtT13AY.3.10.000085
E25V25delGTA---33AY.430.000013
E25V25VgtAgtG33AY.450.000365
E25V25VgtAgtG33AY.460.000312
E25V25VgtAgtG33AY.570.001969
E25V25VgtAgtG33AY.610.000314
E25V25VgtAgtG33AY.640.001786
E25V25VgtAgtG33AY.740.000347
E25V25VgtAgtG23AY.750.000112
E25V25VgtAgtT13AY.750.000056
E25V25AgTagCa33AY.9.20.00011
E25V25VgtAgtG33AY.980.000237
E25V25VgtAgtT33B0.000383
E25V25TGTAACG33B.10.000027
E25V25delGTA---33B.1.1.70.000003
E25V25VgtAgtG33B.1.2410.002435
E25V25VgtAgtG33B.1.2430.000209
E25V25VgtAgtG33B.1.36.290.001552
E25V25VgtAgtC23B.1.3620.003082
E25V25VgtAgtG13B.1.3620.001541
E25V25VgtAgtT23B.1.617.10.000258
E25V25VgtAgtG13B.1.617.10.000129
E25V25VgtAgtG33C.370.000348
E25V25delGTA---220.111111
E25V25SGTaTCa120.055556
E25V25SGTATCG120.055556
E25V25LGtaTta120.055556
E25V25LGtATtG120.055556
E25V25TGTAACG120.055556
E25V25AgTagCa120.055556
E25V25TGTaACa120.055556
E25V25AgTAgCG120.055556
E25V25VgtAgtG22A.10.000564
E25V25EgTagAa22All0
E25V25SGTATCG12All0
E25V25SGTaTCa12All0
E25V25AgTagCa22AY.1020.000053
E25V25VgtAgtG22AY.1190.000071
E25V25VgtAgtG22AY.130.000322
E25V25delGTA---22AY.260.000057
E25V25delGTA---22AY.390.000049
E25V25AgTagCa22AY.4.2.10.000298
E25V25LGtaTta22AY.440.000012
E25V25VgtAgtT12AY.46.60.000072
E25V25VgtAgtG12AY.46.60.000072
E25V25VgtAgtG12AY.5.40.000277
E25V25VgtAgtT12AY.5.40.000277
E25V25AgTagCa22AY.630.000774
E25V25VgtAgtG22AY.9.10.000167
E25V25VgtAgtT22AY.920.000575
E25V25AgTagCa22AY.99.20.000184
E25V25AgTagCa22B.10.000018
E25V25VgtAgtG22B.1.1.2320.00363
E25V25VgtAgtG22B.1.1.4160.00181
E25V25VgtAgtG22B.1.1.4320.002532
E25V25VgtAgtG22B.1.1.5190.000079
E25V25VgtAgtG22B.1.177.150.001262
E25V25VgtAgtG22B.1.177.80.001505
E25V25VgtAgtT22B.1.2400.000431
E25V25VgtAgtG12B.1.3510.00003
E25V25VgtAgtT12B.1.3510.00003
E25V25VgtAgtG22B.1.4200.020833
E25V25VgtAgtT12B.1.466.20.000391
E25V25VgtAgtG12B.1.466.20.000391
E25V25delGTA---22B.1.5250.000226
E25V25VgtAgtG22B.1.5260.000047
E25V25delGTA---22C.37.10.005236
E25V25VgtAgtG22P.1.120.000968
E25V25VgtAgtG22P.20.000373
E25V25VgtAgtG22Q.10.000253
E25V25AgTagCa22Q.40.00091
E25V25VgtAgtG22R.10.00018
E25V25VgtAgtG11A0.000387
E25V25VgtAgtG11A.2.5.20.001572
E25V25GgTAgGT11All0
E25V25delGTA---11AY.100.00053
E25V25VgtAgtG11AY.1010.00049
E25V25VgtAgtT11AY.1060.000335
E25V25VgtAgtG11AY.1140.000231
E25V25delGTA---11AY.1180.000063
E25V25VgtAgtG11AY.120.000316
E25V25IGtaAta11AY.1200.000037
E25V25VgtAgtG11AY.1200.000037
E25V25IGtaAta11AY.1210.000135
E25V25VgtAgtG11AY.16.10.00047
E25V25LGtaTta11AY.230.00007
E25V25VgtAgtG11AY.240.000431
E25V25del1gtAgt-11AY.290.000016
E25V25LGtaTta11AY.30.00001
E25V25VgtAgtG11AY.330.000067
E25V25VgtAgtG11AY.340.000097
E25V25delGTA---11AY.34.10.00051
E25V25VgtAgtG11AY.360.000148
E25V25VgtAgtC11AY.380.000499
E25V25LGtaTta11AY.40.000002
E25V25IGtaAta11AY.40.000002
E25V25delGTA---11AY.40.000002
E25V25LGtaCta11AY.420.00004
E25V25AgTagCa11AY.430.000004
E25V25TGTaACa11AY.440.000006
E25V25VgtAgtG11AY.46.10.001027
E25V25VgtAgtG11AY.46.40.000165
E25V25AgTagCa11AY.46.60.000072
E25V25delGTA---11AY.540.000095
E25V25VgtAgtT11AY.580.000907
E25V25VgtAgtG11AY.670.000464
E25V25VgtAgtG11AY.680.000274
E25V25delGTA---11AY.680.000274
E25V25VgtAgtG11AY.70.000196
E25V25VgtAgtG11AY.7.20.000559
E25V25delGTA---11AY.750.000056
E25V25VgtAgtG11AY.75.10.00018
E25V25del2gTAg--11AY.820.001357
E25V25EgTagAa11AY.850.000427
E25V25VgtAgtG11AY.90.000068
E25V25AgTagCa11AY.910.00073
E25V25delGTA---11AY.950.000761
E25V25VgtAgtG11AY.950.000761
E25V25VgtAgtG11AY.99.20.000092
E25V25IGtaAta11AY.99.20.000092
E25V25LGtaTta11B.10.000009
E25V25TGTAACG11B.1.10.000018
E25V25delGTA---11B.1.10.000018
E25V25AgTagCa11B.1.10.000018
E25V25VgtAgtG11B.1.1.10.000327
E25V25VgtAgtG11B.1.1.1340.011364
E25V25VgtAgtG11B.1.1.1380.006061
E25V25VgtAgtG11B.1.1.1760.000439
E25V25VgtAgtG11B.1.1.2070.001182
E25V25AgTagCa11B.1.1.2140.000055
E25V25VgtAgtG11B.1.1.250.000569
E25V25VgtAgtG11B.1.1.3060.000438
E25V25VgtAgtG11B.1.1.3090.005848
E25V25VgtAgtG11B.1.1.310.066667
E25V25VgtAgtG11B.1.1.3170.000412
E25V25VgtAgtT11B.1.1.3260.001761
E25V25VgtAgtT11B.1.1.390.00051
E25V25VgtAgtG11B.1.1.4090.002833
E25V25delGTA---11B.1.1.4090.002833
E25V25VgtAgtG11B.1.1.4120.007634
E25V25VgtAgtG11B.1.1.4340.000349
E25V25LGtaTta11B.1.1.4640.001473
E25V25AgTagCa11B.1.1.500.000679
E25V25VgtAgtT11B.1.1.500.000679
E25V25AgTagCa11B.1.1.5070.008696
E25V25VgtAgtG11B.1.1.5250.005464
E25V25del1Gta-ta11B.1.1.70.000001
E25V25GgTAgGT11B.1.1.70.000001
E25V25del2gTAg--11B.1.1.70.000001
E25V25EgTagAa11B.1.1.70.000001
E25V25delGTA---11B.1.1770.000013
E25V25AgTagCa11B.1.1770.000013
E25V25VgtAgtG11B.1.177.40.000211
E25V25TGTAACG11B.1.177.730.000566
E25V25VgtAgtG11B.1.1990.004132
E25V25AgTagCa11B.1.20.000009
E25V25VgtAgtG11B.1.2080.04
E25V25delGTA---11B.1.2180.005155
E25V25VgtAgtG11B.1.2210.000071
E25V25AgTagCa11B.1.2430.00007
E25V25delGTA---11B.1.2580.000067
E25V25AgTagCa11B.1.258.170.000104
E25V25TGTAACG11B.1.2600.003344
E25V25VgtAgtG11B.1.2930.0125
E25V25del2gTAg--11B.1.3260.007576
E25V25VgtAgtG11B.1.3460.001311
E25V25del1gtAgt-11B.1.3510.00003
E25V25VgtAgtG11B.1.360.000146
E25V25VgtAgtG11B.1.36.10.00114
E25V25AgTagCa11B.1.3960.000706
E25V25VgtAgtG11B.1.4090.000781
E25V25VgtAgtG11B.1.4280.00102
E25V25TGTAACG11B.1.4560.003268
E25V25VgtAgtG11B.1.5030.002488
E25V25AgTagCa11B.1.5170.000427
E25V25AgTagCa11B.1.5250.000113
E25V25AgTagCa11B.1.5260.000024
E25V25TGTAACG11B.1.5330.009615
E25V25VgtAgtG11B.1.5950.000261
E25V25VgtAgtG11B.1.6000.005848
E25V25VgtAgtT11B.1.6090.000479
E25V25delGTA---11B.1.617.10.000129
E25V25IGtaAta11B.1.617.20.000004
E25V25AgTagCa11B.1.617.20.000004
E25V25LGtaCta11B.1.617.20.000004
E25V25delGTA---11B.1.6270.00202
E25V25VgtAgtG11B.1.6270.00202
E25V25delGTA---11B.1.6380.052632
E25V25VgtAgtG11B.6.60.000889
E25V25VgtAgtT11B.610.005747
E25V25LGtaTta11P.10.000016
E25V25delGTA---11P.1.130.000898
E25V25VgtAgtG11P.1.150.000232
E25V25VgtAgtG11P.1.170.000162
E25V25delGTA---11P.1.70.000319
E25V25delGTA---11Q.20.000613