CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = E : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
E21L21FnonsynCttTtt10606106050.99990626305-26307
E21L21FnonsynCtTTtC1060610.000094286326305-26307
E21L21VnonsynCttGtt23162316126305-26307
E21L21LsynctTctA128811560.89751626305-26307
E21L21LsynctTctC1288780.06055926305-26307
E21L21LsynctTctG1288530.041149126305-26307
E21L21LsynCtTTtA128810.00077639826305-26307
E21L21del1delCtt-tt8788700.99088826305-26307
E21L21del1delctTct-87850.0056947626305-26307
E21L21del1delCtT-tC87810.0011389526305-26307
E21L21del1delcTtc-t87810.0011389526305-26307
E21L21del1delcTTc-N87810.0011389526305-26307
E21L21InonsynCttAtt4684670.99786326305-26307
E21L21InonsynCtTAtA46810.0021367526305-26307
E21L21deldelCTT---6868126305-26307
E21L21PnonsyncTtcCt27260.96296326305-26307
E21L21PnonsyncTTcCC2710.03703726305-26307
E21L21del2delcTTc--88126305-26307
E21L21SnonsynCTtTCt540.826305-26307
E21L21SnonsynCTTTCC510.226305-26307
E21L21HnonsyncTtcAt320.66666726305-26307
E21L21HnonsyncTTcAC310.33333326305-26307
E21L21QnonsyncTTcAG210.526305-26307
E21L21CnonsynCTtTGt210.526305-26307
E21L21CnonsynCTTTGC210.526305-26307
E21L21RnonsyncTtcGt210.526305-26307
E21L21RnonsyncTTcGC210.526305-26307
E21L21QnonsyncTTcAA210.526305-26307
E21L21KnonsynCTTAAA11126305-26307
E21L21NnonsynCTtAAt11126305-26307
E21L21YnonsynCTtTAt11126305-26307

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
E21L21FCttTtt1060510606All0.002028
E21L21FCtTTtC110606All0
E21L21FCttTtt76507650B.1.5250.865678
E21L21VCttGtt23162316All0.000443
E21L21VCttGtt21042104B.1.5960.183339
E21L21LctTctA11561288All0.000221
E21L21LctTctC781288All0.000015
E21L21LctTctG531288All0.00001
E21L21LCtTTtA11288All0
E21L21LctTctA9811016B.1.1.70.000878
E21L21LctTctC321016B.1.1.70.000029
E21L21LctTctG31016B.1.1.70.000003
E21L21del1Ctt-tt870878All0.000166
E21L21del1ctTct-5878All0.000001
E21L21del1cTTc-N1878All0
E21L21del1CtT-tC1878All0
E21L21del1cTtc-t1878All0
E21L21FCttTtt810810B.1.1.70.000725
E21L21del1Ctt-tt710710B.1.5250.080344
E21L21ICttAtt467468All0.000089
E21L21ICtTAtA1468All0
E21L21FCttTtt279279AY.40.000434
E21L21FCttTtt212212B.1.1.630.08179
E21L21ICttAtt199199C.1.20.846809
E21L21FCttTtt149149B.10.001365
E21L21ICttAtt126126AY.390.003114
E21L21FCttTtt9494B.1.20.000828
E21L21FCttTtt9191AY.220.190377
E21L21FCttTtt8686B.1.617.20.000324
E21L21VCttGtt8383B.1.1.70.000074
E21L21del1Ctt-tt7777B.1.5230.188725
E21L21delCTT---6868All0.000013
E21L21FCttTtt6262B.1.1280.03939
E21L21FCttTtt6060B.1.10.001088
E21L21FCttTtt5858B.1.4290.001365
E21L21LctTctA5356AY.250.000319
E21L21LctTctC356AY.250.000018
E21L21FCttTtt5555B.1.1.1010.55
E21L21FCttTtt5353AY.440.000323
E21L21FCttTtt4949B.1.1.3110.01755
E21L21FCttTtt4646P.10.000725
E21L21VCttGtt3939B.1.1.2220.007956
E21L21FCttTtt3737AY.260.001047
E21L21LctTctG3737B.1.1.2220.007548
E21L21LctTctA3737B.1.617.10.004772
E21L21FCttTtt3636AY.200.001399
E21L21VCttGtt3535B.1.20.000308
E21L21FCttTtt3333AY.30.000328
E21L21FCttTtt3131B.1.1770.000408
E21L21FCttTtt3030AY.430.000133
E21L21FCttTtt3030B.1.1.390.015291
E21L21ICttAtt3030C.36.3.10.081522
E21L21PcTtcCt2627All0.000005
E21L21PcTTcCC127All0
E21L21FCttTtt2626AY.1030.000161
E21L21ICttAtt2525AY.470.000778
E21L21LctTctA2424AY.230.001674
E21L21FCttTtt2424B.1.1.5190.000953
E21L21del1Ctt-tt2323B.1.177.210.001759
E21L21FCttTtt2222AY.250.000132
E21L21VCttGtt2222B.1.2580.001464
E21L21FCttTtt2020B.1.1.4001
E21L21del1Ctt-tt2020B.1.1.70.000018
E21L21ICttAtt2020B.1.214.20.01199
E21L21FCttTtt1717P.1.140.000813
E21L21LctTctG1015B.10.000092
E21L21LctTctC315B.10.000027
E21L21LctTctA215B.10.000018
E21L21FCttTtt1414B.1.5260.000329
E21L21LctTctA1014P.10.000158
E21L21LctTctC414P.10.000063
E21L21FCttTtt1313AY.1000.000598
E21L21FCttTtt1313AY.610.001362
E21L21FCttTtt1313B.1.4700.018258
E21L21FCttTtt1212B.1.5230.029412
E21L21FCttTtt1111AY.1020.000292
E21L21FCttTtt1111AY.4.20.000239
E21L21FCttTtt1111B.1.1600.000343
E21L21FCttTtt1111B.1.3510.000327
E21L21FCttTtt1010AY.1100.001127
E21L21LctTctC1010AY.290.000158
E21L21PcTtcCt1010AY.750.00056
E21L21VCttGtt1010B.10.000092
E21L21FCttTtt1010B.1.2340.001319
E21L21FCttTtt1010Q.80.001649
E21L21FCttTtt99AY.290.000142
E21L21FCttTtt99AY.50.000186
E21L21FCttTtt99B.1.1.2160.008014
E21L21LctTctA99B.1.1.3370.032374
E21L21del2cTTc--88All0.000002
E21L21FCttTtt88AY.46.40.001316
E21L21FCttTtt88B.1.1.2050.02974
E21L21delCTT---88P.10.000126
E21L21delCTT---88P.1.150.001859
E21L21FCttTtt77AY.34.10.00357
E21L21LctTctA67AY.460.000624
E21L21LctTctC17AY.460.000104
E21L21FCttTtt77AY.740.00081
E21L21FCttTtt77AY.900.004791
E21L21FCttTtt77B.1.2430.000487
E21L21FCttTtt77B.1.4970.002203
E21L21delCTT---77B.1.6210.00062
E21L21ICttAtt66AY.200.000233
E21L21FCttTtt66AY.39.10.000238
E21L21LctTctA66AY.440.000037
E21L21delCTT---66B0.000767
E21L21ICttAtt66B.10.000055
E21L21FCttTtt66B.1.1.4620.051724
E21L21FCttTtt66B.1.177.810.001136
E21L21LctTctC56B.1.20.000044
E21L21LctTctA16B.1.20.000009
E21L21del1Ctt-tt66B.1.2210.000426
E21L21FCttTtt66B.1.360.000875
E21L21FCttTtt66B.1.5750.00182
E21L21FCttTtt66B.1.6210.000531
E21L21FCttTtt66D.20.00045
E21L21del1Ctt-tt66Q.40.002729
E21L21SCTtTCt45All0.000001
E21L21SCTTTCC15All0
E21L21LctTctC25AY.40.000003
E21L21LctTctA25AY.40.000003
E21L21LctTctG15AY.40.000002
E21L21FCttTtt55AY.90.000338
E21L21FCttTtt55AY.980.000395
E21L21ICttAtt55B.1.10.000091
E21L21FCttTtt55B.1.1.2220.00102
E21L21FCttTtt55B.1.1.3980.016129
E21L21FCttTtt55B.1.2580.000333
E21L21FCttTtt55B.1.258.170.00052
E21L21ICttAtt55B.1.258.20.022523
E21L21del1Ctt-tt55B.1.617.20.000019
E21L21ICttAtt55B.1.617.20.000019
E21L21VCttGtt55B.1.617.20.000019
E21L21FCttTtt55B.280.016393
E21L21FCttTtt55C.370.00058
E21L21FCttTtt55P.1.10.001588
E21L21FCttTtt44AY.1190.000141
E21L21FCttTtt44AY.120.2.10.001993
E21L21ICttAtt44AY.3.10.000341
E21L21FCttTtt44AY.420.000161
E21L21LctTctA34AY.430.000013
E21L21LctTctG14AY.430.000004
E21L21FCttTtt44AY.60.000165
E21L21FCttTtt44AY.98.10.000194
E21L21FCttTtt44AZ.20.003284
E21L21delCTT---44B.10.000037
E21L21LctTctC24B.1.10.000036
E21L21LctTctA24B.1.10.000036
E21L21FCttTtt44B.1.1.330.001684
E21L21PcTtcCt44B.1.1.70.000004
E21L21FCttTtt44B.1.4270.000202
E21L21FCttTtt33A.2.50.001497
E21L21HcTtcAt23All0
E21L21HcTTcAC13All0
E21L21FCttTtt33AY.1170.000254
E21L21FCttTtt33AY.1200.000112
E21L21FCttTtt33AY.140.000264
E21L21FCttTtt33AY.160.001139
E21L21delCTT---33AY.250.000018
E21L21FCttTtt33AY.390.000074
E21L21ICttAtt33AY.40.000005
E21L21delCTT---33AY.430.000013
E21L21FCttTtt33AY.9.20.00011
E21L21FCttTtt33B0.000383
E21L21PcTtcCt33B.10.000027
E21L21del1Ctt-tt13B.10.000009
E21L21del1cTTc-N13B.10.000009
E21L21del1ctTct-13B.10.000009
E21L21FCttTtt33B.1.1.280.000934
E21L21FCttTtt33B.1.1.4290.013825
E21L21FCttTtt33B.1.1.4340.001046
E21L21FCttTtt33B.1.1.480.008621
E21L21delCTT---33B.1.1.70.000003
E21L21ICttAtt33B.1.1770.00004
E21L21FCttTtt33B.1.177.210.000229
E21L21FCttTtt33B.1.177.600.000655
E21L21FCttTtt33B.1.177.860.00055
E21L21del1Ctt-tt33B.1.3510.000089
E21L21FCttTtt33B.1.3690.000856
E21L21del1Ctt-tt33B.1.4700.004213
E21L21FCttTtt33B.1.5090.002597
E21L21delCTT---33B.1.5250.000339
E21L21FCttTtt33B.1.6160.073171
E21L21LctTctC23B.1.617.20.000008
E21L21LctTctA13B.1.617.20.000004
E21L21ICttAtt33C.370.000348
E21L21del1Ctt-tt23P.10.000032
E21L21del1ctTct-13P.10.000016
E21L21ICttAtt33Q.30.000435
E21L21FCttTtt33Q.30.000435
E21L21del2cTTc--220.111111
E21L21SCTtTCt120.055556
E21L21PcTTcCC120.055556
E21L21FCttTtt120.055556
E21L21RcTTcGC120.055556
E21L21PcTtcCt120.055556
E21L21FCtTTtC120.055556
E21L21CCTtTGt120.055556
E21L21RcTtcGt120.055556
E21L21CCTTTGC120.055556
E21L21SCTTTCC120.055556
E21L21FCttTtt22A.270.003311
E21L21RcTTcGC12All0
E21L21CCTtTGt12All0
E21L21QcTTcAA12All0
E21L21QcTTcAG12All0
E21L21RcTtcGt12All0
E21L21CCTTTGC12All0
E21L21ICttAtt22AY.1030.000012
E21L21LctTctA22AY.1030.000012
E21L21FCttTtt22AY.1110.000366
E21L21FCttTtt22AY.1160.000574
E21L21FCttTtt22AY.1180.000125
E21L21VCttGtt22AY.1190.000071
E21L21FCttTtt22AY.230.000139
E21L21VCttGtt22AY.250.000012
E21L21delCTT---22AY.260.000057
E21L21FCttTtt22AY.380.000999
E21L21delCTT---22AY.390.000049
E21L21FCttTtt22AY.4.2.10.000298
E21L21FCttTtt22AY.4.50.000215
E21L21ICttAtt22AY.420.00008
E21L21FCttTtt22AY.480.00093
E21L21LctTctC22AY.530.000575
E21L21FCttTtt22AY.600.001876
E21L21FCttTtt22AY.720.002721
E21L21VCttGtt22B.1.10.000036
E21L21FCttTtt22B.1.1.1530.002191
E21L21FCttTtt22B.1.1.2180.015385
E21L21FCttTtt22B.1.1.250.001137
E21L21LctTctA22B.1.1.270.011299
E21L21FCttTtt22B.1.1.2840.000215
E21L21FCttTtt22B.1.1.3060.000877
E21L21FCttTtt22B.1.1.3160.00185
E21L21FCttTtt22B.1.1.3170.000823
E21L21FCttTtt22B.1.1.3180.000604
E21L21FCttTtt22B.1.1.3390.021053
E21L21FCttTtt22B.1.1.4190.014815
E21L21FCttTtt22B.1.1470.001512
E21L21FCttTtt22B.1.177.170.001642
E21L21FCttTtt22B.1.177.350.001382
E21L21FCttTtt22B.1.177.570.000562
E21L21FCttTtt22B.1.177.720.00678
E21L21FCttTtt22B.1.1900.02
E21L21FCttTtt22B.1.2210.000142
E21L21FCttTtt22B.1.3110.000549
E21L21FCttTtt22B.1.3960.001411
E21L21FCttTtt22B.1.4160.002538
E21L21FCttTtt22B.1.4250.005988
E21L21VCttGtt22B.1.4290.000047
E21L21FCttTtt22B.1.466.10.014388
E21L21FCttTtt22B.1.5370.04
E21L21ICttAtt12B.1.6210.000089
E21L21ICtTAtA12B.1.6210.000089
E21L21ICttAtt22B.1.6370.000146
E21L21FCttTtt22B.1.6380.105263
E21L21ICttAtt22B.4.70.020202
E21L21delCTT---22C.370.000232
E21L21del2cTTc--22C.370.000232
E21L21delCTT---22C.37.10.005236
E21L21ICttAtt22P.10.000032
E21L21LctTctA22P.1.140.000096
E21L21FCttTtt22P.20.000373
E21L21FCttTtt22P.70.008734
E21L21LctTctC110.055556
E21L21FCttTtt11A0.000387
E21L21LctTctG11A.2.40.003367
E21L21FCttTtt11A.23.10.000704
E21L21FCttTtt11AD.20.000219
E21L21FCttTtt11AH.20.012048
E21L21YCTtTAt11All0
E21L21NCTtAAt11All0
E21L21KCTTAAA11All0
E21L21delCTT---11AY.100.00053
E21L21LctTctC11AY.1020.000027
E21L21delCTT---11AY.1180.000063
E21L21del1Ctt-tt11AY.1190.000035
E21L21FCttTtt11AY.1210.000135
E21L21FCttTtt11AY.16.10.00047
E21L21LctTctA11AY.16.10.00047
E21L21FCttTtt11AY.190.00114
E21L21del1Ctt-tt11AY.200.000039
E21L21del1Ctt-tt11AY.230.00007
E21L21SCTtTCt11AY.230.00007
E21L21del1Ctt-tt11AY.240.000431
E21L21del1Ctt-tt11AY.250.000006
E21L21del2cTTc--11AY.250.000006
E21L21ICttAtt11AY.250.000006
E21L21VCttGtt11AY.30.00001
E21L21del1Ctt-tt11AY.30.00001
E21L21FCttTtt11AY.3.10.000085
E21L21FCttTtt11AY.330.000067
E21L21FCttTtt11AY.340.000097
E21L21del1ctTct-11AY.34.10.00051
E21L21FCttTtt11AY.370.000316
E21L21del1Ctt-tt11AY.390.000025
E21L21LctTctA11AY.390.000025
E21L21VCttGtt11AY.40.000002
E21L21SCTtTCt11AY.40.000002
E21L21PcTtcCt11AY.40.000002
E21L21ICttAtt11AY.4.20.000022
E21L21LctTctC11AY.4.50.000107
E21L21delCTT---11AY.410.000294
E21L21ICttAtt11AY.430.000004
E21L21PcTtcCt11AY.430.000004
E21L21ICttAtt11AY.440.000006
E21L21VCttGtt11AY.440.000006
E21L21del1Ctt-tt11AY.440.000006
E21L21FCttTtt11AY.450.000122
E21L21LctTctC11AY.450.000122
E21L21FCttTtt11AY.460.000104
E21L21FCttTtt11AY.46.10.001027
E21L21del1Ctt-tt11AY.46.60.000072
E21L21FCttTtt11AY.46.60.000072
E21L21FCttTtt11AY.470.000031
E21L21FCttTtt11AY.5.30.000337
E21L21delCTT---11AY.540.000095
E21L21PcTtcCt11AY.60.000041
E21L21ICttAtt11AY.670.000464
E21L21LctTctA11AY.670.000464
E21L21delCTT---11AY.680.000274
E21L21PcTtcCt11AY.690.000187
E21L21FCttTtt11AY.690.000187
E21L21FCttTtt11AY.700.000209
E21L21FCttTtt11AY.710.000475
E21L21VCttGtt11AY.750.000056
E21L21delCTT---11AY.750.000056
E21L21FCttTtt11AY.75.10.00018
E21L21FCttTtt11AY.80.000606
E21L21FCttTtt11AY.830.001724
E21L21FCttTtt11AY.850.000427
E21L21LctTctA11AY.920.000287
E21L21FCttTtt11AY.920.000287
E21L21ICttAtt11AY.980.000079
E21L21del1CtT-tC11B0.000128
E21L21HcTtcAt11B.10.000009
E21L21del2cTTc--11B.10.000009
E21L21YCTtTAt11B.10.000009
E21L21SCTtTCt11B.10.000009
E21L21del1Ctt-tt11B.1.10.000018
E21L21delCTT---11B.1.10.000018
E21L21LctTctC11B.1.1.1530.001095
E21L21FCttTtt11B.1.1.1760.000439
E21L21ICttAtt11B.1.1.2140.000055
E21L21FCttTtt11B.1.1.2200.001859
E21L21FCttTtt11B.1.1.2690.001353
E21L21FCttTtt11B.1.1.2730.006757
E21L21LctTctA11B.1.1.280.000311
E21L21VCttGtt11B.1.1.3370.003597
E21L21FCttTtt11B.1.1.370.000193
E21L21FCttTtt11B.1.1.3860.066667
E21L21FCttTtt11B.1.1.4020.011111
E21L21FCttTtt11B.1.1.4090.002833
E21L21del1ctTct-11B.1.1.4090.002833
E21L21LctTctC11B.1.1.4230.0625
E21L21LctTctA11B.1.1.4340.000349
E21L21FCttTtt11B.1.1.5070.008696
E21L21del1Ctt-tt11B.1.1.5190.00004
E21L21FCttTtt11B.1.1.5260.003546
E21L21FCttTtt11B.1.1.580.005376
E21L21ICttAtt11B.1.1.70.000001
E21L21delCTT---11B.1.1.80.003584
E21L21FCttTtt11B.1.1.950.019608
E21L21FCttTtt11B.1.1490.003425
E21L21LctTctC11B.1.1600.000031
E21L21delCTT---11B.1.1770.000013
E21L21PcTtcCt11B.1.1770.000013
E21L21LctTctA11B.1.1770.000013
E21L21FCttTtt11B.1.177.330.001645
E21L21FCttTtt11B.1.177.40.000211
E21L21FCttTtt11B.1.177.50.001242
E21L21FCttTtt11B.1.177.520.001757
E21L21PcTtcCt11B.1.177.630.002703
E21L21FCttTtt11B.1.177.820.000477
E21L21del1Ctt-tt11B.1.20.000009
E21L21FCttTtt11B.1.2060.000816
E21L21HcTTcAC11B.1.2100.002132
E21L21delCTT---11B.1.2180.005155
E21L21ICttAtt11B.1.2210.000071
E21L21LctTctA11B.1.2340.000132
E21L21FCttTtt11B.1.2370.004975
E21L21FCttTtt11B.1.2400.000216
E21L21delCTT---11B.1.2580.000067
E21L21del1Ctt-tt11B.1.2580.000067
E21L21VCttGtt11B.1.2640.012346
E21L21LctTctC11B.1.2650.001271
E21L21FCttTtt11B.1.3050.002151
E21L21VCttGtt11B.1.3110.000275
E21L21LctTctC11B.1.3440.008197
E21L21FCttTtt11B.1.3460.001311
E21L21PcTtcCt11B.1.36.10.00114
E21L21FCttTtt11B.1.36.240.006173
E21L21FCttTtt11B.1.36.290.000517
E21L21FCttTtt11B.1.36.310.001751
E21L21FCttTtt11B.1.3750.00082
E21L21FCttTtt11B.1.4560.003268
E21L21FCttTtt11B.1.4990.00105
E21L21LctTctA11B.1.5150.014493
E21L21VCttGtt11B.1.5250.000113
E21L21LCtTTtA11B.1.5250.000113
E21L21LctTctC11B.1.5260.000024
E21L21VCttGtt11B.1.5260.000024
E21L21FCttTtt11B.1.5330.009615
E21L21FCttTtt11B.1.5640.000426
E21L21FCttTtt11B.1.5650.00081
E21L21ICttAtt11B.1.5760.000907
E21L21FCttTtt11B.1.5770.000687
E21L21FCttTtt11B.1.5820.000491
E21L21FCttTtt11B.1.5970.00463
E21L21FCttTtt11B.1.6090.000479
E21L21del1cTtc-t11B.1.617.10.000129
E21L21FCttTtt11B.1.617.10.000129
E21L21QcTTcAG11B.1.617.20.000004
E21L21HcTtcAt11B.1.6210.000089
E21L21LctTctA11B.1.6210.000089
E21L21del2cTTc--11B.1.6210.000089
E21L21QcTTcAA11B.1.6210.000089
E21L21NCTtAAt11B.1.6210.000089
E21L21KCTTAAA11B.1.6210.000089
E21L21FCttTtt11B.1.6230.000536
E21L21ICttAtt11B.1.6230.000536
E21L21delCTT---11B.1.6270.00202
E21L21FCttTtt11B.1.6360.006711
E21L21FCttTtt11B.1.6370.000073
E21L21PcTtcCt11B.1.6370.000073
E21L21delCTT---11B.1.6380.052632
E21L21ICttAtt11B.60.00091
E21L21FCttTtt11B.60.00091
E21L21ICttAtt11C.10.002392
E21L21del1Ctt-tt11C.360.000911
E21L21FCttTtt11C.360.000911
E21L21LctTctC11C.370.000116
E21L21VCttGtt11C.370.000116
E21L21del2cTTc--11P.10.000016
E21L21LctTctA11P.1.10.000318
E21L21FCttTtt11P.1.100.000269
E21L21FCttTtt11P.1.120.000484
E21L21delCTT---11P.1.130.000898
E21L21del1ctTct-11P.1.150.000232
E21L21FCttTtt11P.1.160.000374
E21L21FCttTtt11P.1.60.001946
E21L21LctTctC11P.1.70.000319
E21L21delCTT---11P.1.70.000319
E21L21FCttTtt11P.1.70.000319
E21L21FCttTtt11P.30.001595
E21L21FCttTtt11Q.10.000126
E21L21FCttTtt11Q.40.000455
E21L21LctTctA11Q.80.000165
E21L21FCttTtt11R.10.00009
E21L21LctTctA11W.10.008696
E21L21FCttTtt11Z.10.00289