CoV-GLUE Lineage

CoV-GLUE Lineage: AY.92

Table of countries and their respective (filtered) sequence count for the lineage 'AY.92'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99
AY.92	All	3481	64	99	Mutations	7	0	0	2	1	2	5	7	2	51	37	37	27	26	34	54	96	80	127	126	205	176	178	216	195	173	203	187	175	233	187	168	210	210	33	3
AY.92	USA	947	70	98		0	0	0	0	0	0	2	1	0	1	1	3	0	2	1	5	4	9	25	44	68	56	30	58	74	67	70	70	61	64	54	55	71	47	2	0
AY.92	BELGIUM	886	67	99		0	0	0	1	0	0	0	0	0	46	36	28	15	17	17	31	64	54	56	37	61	54	30	35	29	21	21	32	30	41	25	43	30	20	10	2
AY.92	GERMANY	229	70	98		0	0	0	0	0	0	1	2	0	0	0	0	0	0	1	0	1	1	2	4	3	13	23	32	19	18	22	10	18	9	9	10	14	10	7	0
AY.92	POLAND	229	82	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	3	9	19	19	20	43	21	13	24	53	2	0
AY.92	FRANCE	179	78	99		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	7	3	11	9	9	8	26	25	7	4	16	3	3	2	13	8	13	5	0	1
AY.92	DENMARK	161	83	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	3	3	0	2	1	3	3	8	33	25	16	20	34	4	0
AY.92	ITALY	125	64	98		6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	2	3	0	2	7	20	11	14	1	17	6	3	13	2	5	2	3	4	0
AY.92	INDIA	75	67	96		0	0	0	1	0	1	0	3	1	2	0	3	4	4	4	3	6	1	6	3	7	6	2	7	3	3	2	0	0	1	0	0	1	0	0	0
AY.92	UK-ENGLAND	70	73	98		0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	2	1	0	0	1	1	0	2	4	0	10	4	8	5	3	11	3	4	3	2	0
AY.92	SWITZERLAND	65	72	98		0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	4	2	0	2	6	10	1	1	1	0	1	6	10	17	1	0
AY.92	NETHERLANDS	59	81	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	2	2	9	9	4	0	6	5	4	4	2	6	3	0	0
AY.92	SWEDEN	47	81	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	9	4	4	3	0	0	1	2	0	1	2	1	3	3	9	0	0	0
AY.92	BULGARIA	47	82	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	3	2	9	7	3	4	5	8	2	0	0	0	0	0
AY.92	ICELAND	42	82	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	18	6	13	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	LUXEMBOURG	41	82	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	5	7	4	3	0	2	0	0	0	1	1	0	4	7	0	0
AY.92	ISRAEL	37	78	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	4	3	2	4	1	5	1	2	4	1	0	2	2	0	0	1	0	0
AY.92	ROMANIA	24	84	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	4	0	2	8	4	1	1	0	0	2	0	0
AY.92	TURKEY	23	78	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	6	0	2	0	0	1	0	1	1	3	1	0	0	4	0	0
AY.92	SEYCHELLES	22	76	88		0	0	0	0	0	0	0	0	0	0	0	0	5	0	5	0	0	0	0	0	0	0	8	3	1	0	0	0	0	0	0	0	0	0	0	0
AY.92	PORTUGAL	15	79	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	2	0	3	2	2	3	0	0	0	0	0
AY.92	SPAIN	13	80	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	1	2	2	1	0	1	0	0	0	0	0
AY.92	KENYA	13	79	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	3	5	1	0	0	0	0	0	0	0	0	0	0
AY.92	RUSSIA	8	84	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	3	0	1	0	1	0	0	0	0	0
AY.92	SOUTH_AFRICA	7	64	88		1	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
AY.92	ECUADOR	7	84	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	3	0	0	0	0	0	0	0	1	0
AY.92	CANADA	7	86	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	1	0	0	0	0	0
AY.92	CZECH_REPUBLIC	7	90	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	3	0	0	0	0
AY.92	AUSTRIA	6	76	96		0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0
AY.92	AUSTRALIA	6	84	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	1	0	0	0	0	0	0	1	0	0
AY.92	COLOMBIA	6	81	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0
AY.92	SLOVENIA	5	84	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
AY.92	BRAZIL	5	91	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	0	0	0	0	0
AY.92	QATAR	4	69	87		0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	IRELAND	4	83	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0
AY.92	KUWAIT	4	91	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
AY.92	UK-SCOTLAND	3	79	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0
AY.92	MALAYSIA	3	79	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
AY.92	LITHUANIA	3	86	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	NIGERIA	3	84	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0
AY.92	MEXICO	3	87	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0
AY.92	SENEGAL	2	75	75		0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	FINLAND	2	83	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	INDONESIA	2	77	80		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	THAILAND	2	88	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
AY.92	PARAGUAY	2	83	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	GREECE	2	85	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
AY.92	REUNION	2	90	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
AY.92	GHANA	2	80	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
AY.92	BANGLADESH	2	88	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
AY.92	GUINEA	2	80	81		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	PAKISTAN	2	81	83		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	IRAN	1	70	70		0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	NEPAL	1	71	71		0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	SRI_LANKA	1	78	78		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	TUNISIA	1	73	73		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	GAMBIA	1	80	80		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	PUERTO_RICO	1	83	83		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	UK-WALES	1	87	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	JAPAN	1	86	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	MALI	1	85	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	ETHIOPIA	1	82	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	JORDAN	1	-1	-1		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	PHILIPPINES	1	84	84		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	CAMEROON	1	90	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
AY.92	RWANDA	1	87	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.92	NORWAY	1	92	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
AY.92	SOUTH_KOREA	1	91	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
AY.92	MALDIVES	1	94	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AY.92	CHILE	1	96	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
AY.92	CROATIA	1	95	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.