CoV-GLUE Lineage

CoV-GLUE Lineage: AY.88

Table of countries and their respective (filtered) sequence count for the lineage 'AY.88'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98
AY.88	All	1131	65	98	Mutations	1	0	1	1	1	10	5	5	6	1	3	3	7	20	41	61	76	84	45	64	76	63	46	59	85	75	46	63	67	44	22	26	14	4
AY.88	GHANA	238	73	89		0	0	0	0	0	0	0	0	3	0	1	2	2	13	12	41	42	51	12	21	23	8	3	0	4	0	0	0	0	0	0	0	0	0
AY.88	DENMARK	185	81	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	1	2	10	25	22	16	19	34	29	11	8	3	1
AY.88	USA	181	81	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	11	5	12	13	15	19	12	22	15	8	16	14	9	3	4	1	0
AY.88	UK-ENGLAND	151	72	98		0	0	0	0	0	0	0	1	2	1	2	0	3	5	20	5	4	7	8	5	13	8	4	5	7	12	7	12	2	3	4	4	2	2
AY.88	GERMANY	85	79	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	1	2	7	7	6	13	15	11	6	3	2	0	2	2	1	1
AY.88	ITALY	45	78	97		0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	6	0	0	3	2	1	6	5	4	4	3	2	1	0	1	1	0	2	0
AY.88	INDIA	24	67	92		0	0	1	0	0	0	1	3	1	0	0	1	1	0	0	2	0	0	0	5	3	0	0	2	2	1	0	1	0	0	0	0	0	0
AY.88	SLOVAKIA	23	80	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	10	1	4	0	0	0	0	0	0	0	0	0	2	1	0	1	1	0
AY.88	BELGIUM	22	79	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	2	3	3	5	4	1	0	0	1	0	0	0	0	0	0	0
AY.88	INDONESIA	15	69	71		0	0	0	0	1	10	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	PORTUGAL	15	86	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	5	3	0	0	2	1	0
AY.88	CANADA	13	72	90		0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	6	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0
AY.88	NETHERLANDS	13	81	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	0	1	0	0	1	0	1	0	0	0	0	0	2	2	0
AY.88	NORWAY	12	83	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	3	2	0	1	0	3	0	0	0	0	0	0	0	0
AY.88	SWITZERLAND	11	80	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	2	2	1	0	1	0	0	0	0	0
AY.88	FRANCE	10	82	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	1	1	2	0	1	0	0	0	1	0
AY.88	SWEDEN	10	84	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	2	1	0	0	0	0	1	0	0	0	0	0
AY.88	JAPAN	9	79	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	1	1	0	2	1	0	0	0	0	0	0	0	0	0
AY.88	TURKEY	9	78	93		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	3	0	0	1	1	1	0	0	0	0	0
AY.88	ISRAEL	7	81	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	1	0	0	0	0	2	0	0	0	0	0
AY.88	POLAND	7	87	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	2	0	1	1	0	0	0
AY.88	UK-SCOTLAND	6	82	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	2	0	0	0	0	0	0
AY.88	QATAR	6	85	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	UK-NORTHERN_IRELAND	5	79	81		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	TOGO	5	68	83		0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	FINLAND	3	83	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
AY.88	NEW_ZEALAND	2	82	84		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	BANGLADESH	2	81	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	NIGERIA	2	81	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	AUSTRIA	2	88	88		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
AY.88	ESTONIA	2	96	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
AY.88	SLOVENIA	1	83	83		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	SOUTH_KOREA	1	86	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	PAKISTAN	1	89	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
AY.88	BENIN	1	82	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	MEXICO	1	93	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AY.88	RUSSIA	1	93	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AY.88	ROMANIA	1	93	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AY.88	UK-WALES	1	96	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
AY.88	CROATIA	1	92	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
AY.88	CZECH_REPUBLIC	1	65	65		1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.88	ECUADOR	1	93	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.