CoV-GLUE Lineage

CoV-GLUE Lineage: AY.7

Table of countries and their respective (filtered) sequence count for the lineage 'AY.7'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98
AY.7	All	5102	69	98	Mutations	1	4	16	35	65	232	266	221	190	359	354	288	201	331	405	307	255	250	200	218	155	125	101	72	98	60	64	55	37	51
AY.7	UK-ENGLAND	4073	70	98		0	4	15	35	64	229	262	215	162	293	311	237	171	293	324	241	194	149	123	112	78	70	65	42	79	43	56	42	32	46
AY.7	UK-SCOTLAND	364	76	98		0	0	0	0	0	0	0	1	1	3	2	4	4	5	18	6	12	53	48	66	50	35	14	16	7	4	4	6	0	5
AY.7	UK-WALES	297	71	96		0	0	1	0	0	2	3	5	27	58	26	25	12	9	31	29	22	9	9	11	3	4	5	3	1	1	0	1	0	0
AY.7	IRELAND	138	78	94		0	0	0	0	0	0	0	0	0	1	1	3	2	5	10	18	9	16	4	19	15	7	8	9	5	6	0	0	0	0
AY.7	GERMANY	39	82	96		0	0	0	0	0	0	0	0	0	0	0	0	0	7	4	1	1	3	2	6	4	3	6	0	0	1	0	1	0	0
AY.7	SPAIN	30	79	88		0	0	0	0	0	0	0	0	0	0	1	1	0	1	3	4	9	7	3	1	0	0	0	0	0	0	0	0	0	0
AY.7	ITALY	21	79	86		0	0	0	0	0	0	0	0	0	0	8	8	1	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0
AY.7	DENMARK	17	80	97		0	0	0	0	0	0	0	0	0	0	0	1	1	1	7	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0
AY.7	BELGIUM	14	80	95		0	0	0	0	0	0	0	0	0	0	0	2	3	3	2	1	0	1	0	0	1	0	0	0	0	0	1	0	0	0
AY.7	USA	14	81	97		0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	1	0	1	0	1	1	2	2	2	0	1	0
AY.7	ICELAND	14	81	87		0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	4	4	4	0	0	0	0	0	0	0	0	0	0	0
AY.7	SWITZERLAND	9	79	97		0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0
AY.7	INDIA	8	69	90		1	0	0	0	1	1	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0
AY.7	AUSTRIA	7	80	84		0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.7	BULGARIA	6	78	86		0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0
AY.7	SWEDEN	6	79	90		0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0
AY.7	LITHUANIA	6	78	95		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	0	0	0
AY.7	UK-NORTHERN_IRELAND	5	79	81		0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.7	FRANCE	5	80	92		0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
AY.7	NETHERLANDS	5	82	87		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0
AY.7	POLAND	4	83	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0
AY.7	RUSSIA	3	78	94		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
AY.7	ROMANIA	2	79	91		0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
AY.7	ISRAEL	2	82	96		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
AY.7	CZECH_REPUBLIC	2	87	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
AY.7	PORTUGAL	2	90	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
AY.7	CANARY_ISLANDS	2	82	84		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.7	GREECE	2	89	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
AY.7	TURKEY	2	93	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
AY.7	SLOVENIA	1	88	88		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
AY.7	FINLAND	1	84	84		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.7	JAPAN	1	87	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.