CoV-GLUE Lineage

CoV-GLUE Lineage: AY.62

Table of countries and their respective (filtered) sequence count for the lineage 'AY.62'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99
AY.62	All	2295	68	99	Mutations	1	2	3	2	1	12	15	23	22	32	47	68	95	129	170	167	221	188	196	146	202	140	122	82	72	50	30	31	19	4	1	1
AY.62	USA	1966	70	97		0	0	3	2	1	7	15	19	18	21	31	61	89	119	148	152	206	178	173	120	165	117	99	71	54	35	25	17	16	3	0	0
AY.62	MEXICO	208	73	96		0	0	0	0	0	1	0	3	4	4	11	3	3	5	15	8	8	3	12	22	28	22	11	8	16	11	4	4	2	0	0	0
AY.62	GERMANY	20	84	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	1	3	1	5	1	0	1	0	2	0	1	0	0
AY.62	ITALY	19	77	99		0	0	0	0	0	0	0	0	0	2	1	0	0	1	3	5	1	3	0	0	0	0	1	0	1	0	0	0	0	0	0	1
AY.62	INDIA	14	68	86		1	1	0	0	0	1	0	1	0	0	0	1	2	1	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	THAILAND	9	77	95		0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	1	0	0	1	0	1	1	1	1	0	0	0	0
AY.62	CANADA	9	77	91		0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	3	0	1	1	0	0	0	0	0	0	0	0
AY.62	INDONESIA	5	77	83		0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	NETHERLANDS	5	79	95		0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
AY.62	CHILE	4	87	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0
AY.62	UK-ENGLAND	3	73	90		0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
AY.62	FRANCE	3	80	98		0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
AY.62	BELGIUM	3	81	96		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
AY.62	UK-SCOTLAND	3	84	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	MALAYSIA	3	84	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	VIETNAM	3	88	88		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
AY.62	FINLAND	2	73	73		0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	AUSTRALIA	2	78	79		0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	AUSTRIA	2	79	90		0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
AY.62	ISRAEL	2	90	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
AY.62	JAPAN	1	69	69		0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	SOUTH_AFRICA	1	77	77		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	ARUBA	1	82	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	PUERTO_RICO	1	83	83		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	SWEDEN	1	84	84		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	GHANA	1	78	78		0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	PAKISTAN	1	90	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
AY.62	SWITZERLAND	1	91	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
AY.62	MYANMAR	1	78	78		0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.62	BAHRAIN	1	93	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.