CoV-GLUE Lineage

CoV-GLUE Lineage: AY.46.1

Table of countries and their respective (filtered) sequence count for the lineage 'AY.46.1'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98
AY.46.1	All	974	73	98	Mutations	1	1	0	2	1	3	9	10	15	33	38	69	42	54	60	65	58	85	70	65	73	78	47	49	28	18
AY.46.1	USA	710	78	98		0	0	0	0	0	2	3	4	3	10	15	46	38	38	46	51	52	61	53	49	61	68	43	41	17	9
AY.46.1	ITALY	130	78	98		0	0	0	0	0	1	2	0	6	14	17	18	1	7	8	4	1	11	10	8	4	3	1	2	4	8
AY.46.1	GERMANY	29	82	95		0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	2	9	4	5	1	4	1	0	0	0
AY.46.1	PUERTO_RICO	12	80	84		0	0	0	0	0	0	0	1	4	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.46.1	INDIA	11	73	89		1	0	0	0	1	0	2	3	0	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0
AY.46.1	FRANCE	10	79	94		0	0	0	0	0	0	1	0	1	2	0	0	0	1	0	2	1	1	0	0	0	1	0	0	0	0
AY.46.1	UK-ENGLAND	9	76	98		0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	1	1	0	0	0	1
AY.46.1	NETHERLANDS	8	91	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	1	2	0	0
AY.46.1	CANADA	7	86	92		0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	0	0	1	0	0	0	0	0	0
AY.46.1	RUSSIA	6	74	90		0	1	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0
AY.46.1	SWEDEN	6	83	97		0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	1	0	0	1	0
AY.46.1	EGYPT	6	84	88		0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0
AY.46.1	TURKEY	5	79	97		0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0
AY.46.1	POLAND	4	91	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	2	0
AY.46.1	DENMARK	4	96	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0
AY.46.1	COLOMBIA	3	84	86		0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.46.1	AUSTRALIA	3	80	93		0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0
AY.46.1	UK-SCOTLAND	2	89	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0
AY.46.1	CHILE	2	92	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
AY.46.1	SPAIN	2	96	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
AY.46.1	ICELAND	1	87	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
AY.46.1	PAKISTAN	1	87	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
AY.46.1	LUXEMBOURG	1	85	85		0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.46.1	BELGIUM	1	92	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
AY.46.1	ECUADOR	1	95	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.