CoV-GLUE Lineage

CoV-GLUE Lineage: AY.41

Table of countries and their respective (filtered) sequence count for the lineage 'AY.41'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98
AY.41	All	3402	67	98	Mutations	2	0	0	1	0	1	1	1	3	1	13	2	25	37	78	101	115	231	322	283	348	296	236	272	218	171	173	157	113	97	70	30
AY.41	GERMANY	1286	75	98		0	0	0	0	0	0	0	0	2	0	0	1	2	9	11	19	25	59	87	104	171	134	112	122	110	84	56	47	58	38	26	9
AY.41	SLOVENIA	602	80	95		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	11	46	82	47	32	45	40	71	32	42	76	60	12	0	0	0
AY.41	CROATIA	363	79	95		0	0	0	0	0	0	0	0	0	0	0	0	9	3	9	13	16	19	41	47	64	43	21	14	25	14	5	15	5	0	0	0
AY.41	AUSTRIA	264	77	95		0	0	0	0	0	0	0	0	0	0	8	0	10	16	44	40	19	37	23	23	9	4	3	13	3	3	6	1	2	0	0	0
AY.41	UK-ENGLAND	170	78	98		0	0	0	0	0	0	0	0	0	0	0	1	2	4	1	6	14	8	7	9	8	8	4	11	14	8	8	11	13	7	15	8
AY.41	SWEDEN	144	82	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	9	14	34	15	16	9	19	3	6	5	2	2	0	1	3	0
AY.41	SWITZERLAND	142	83	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	5	6	8	12	14	4	10	3	2	6	12	39	18	1
AY.41	CZECH_REPUBLIC	57	82	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	11	11	8	2	1	8	1	3	2	4	0	4	1	0	0	0
AY.41	DENMARK	49	80	98		0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	1	0	4	4	11	1	5	0	0	0	0	1	3	1	0	2	9
AY.41	USA	40	79	97		0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	4	4	2	2	4	0	7	4	0	4	0	2	2	1	0
AY.41	ITALY	39	82	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	5	5	0	0	0	3	7	2	2	2	2	1	5	0	0
AY.41	ISRAEL	34	81	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	7	10	6	3	0	0	3	2	0	0	0	0
AY.41	IRELAND	27	84	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	5	0	4	1	2	1	0	3	0	0	0	0	0	1
AY.41	UK-WALES	25	76	97		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	2	1	1	3	2	3	1	0	2	1	2	4	1	0
AY.41	NETHERLANDS	20	77	95		0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	4	4	1	0	4	0	2	0	1	0	0	0
AY.41	BELGIUM	19	80	87		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	5	7	3	2	0	0	0	0	0	0	0	0	0	0	0
AY.41	SLOVAKIA	14	81	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	1	0	1	2	1	0	1	0	1	1	0	0	0	1	0
AY.41	POLAND	14	86	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	3	2	0	1	1	1	1	0	0
AY.41	INDIA	13	67	91		2	0	0	0	0	1	1	0	0	0	3	0	1	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0
AY.41	UK-SCOTLAND	8	81	98		0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2
AY.41	FINLAND	8	87	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	1	0	0	0	0	0	0	0	0	0
AY.41	BANGLADESH	7	70	81		0	0	0	1	0	0	0	1	1	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.41	FRANCE	7	82	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	1	0	0	0
AY.41	CANADA	7	86	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	1	0	0	0	0	0	0	0	0
AY.41	JAPAN	7	85	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	2	0	0	0	0	0	0	0	0	0
AY.41	NORWAY	5	83	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0
AY.41	ROMANIA	4	89	92		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0
AY.41	SPAIN	3	84	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0
AY.41	LIECHTENSTEIN	3	85	89		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0
AY.41	TURKEY	3	92	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0
AY.41	LITHUANIA	2	84	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.41	PORTUGAL	2	87	88		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0
AY.41	RUSSIA	2	86	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
AY.41	ARUBA	2	89	91		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
AY.41	BRAZIL	2	90	95		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0
AY.41	THAILAND	2	94	94		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
AY.41	SOUTH_KOREA	1	82	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.41	PUERTO_RICO	1	84	84		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.41	BULGARIA	1	85	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.41	BOSNIA_AND_HERZEGOVINA	1	90	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
AY.41	LUXEMBOURG	1	84	84		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.41	PHILIPPINES	1	82	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.