CoV-GLUE Lineage

CoV-GLUE Lineage: AY.1

Table of countries and their respective (filtered) sequence count for the lineage 'AY.1'.

Lineage	Country	Count	EarliestEpiWeek	LatestEpiWeek	View Mutations	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98
AY.1	All	2527	67	98	Mutations	5	5	6	16	38	43	41	38	37	66	36	64	74	93	91	137	281	353	274	145	128	112	80	62	31	34	45	31	42	59	34	5
AY.1	USA	1710	69	98		0	0	1	2	5	4	4	4	3	20	20	37	46	69	53	90	221	276	208	103	96	91	67	52	24	25	35	28	34	56	31	5
AY.1	PHILIPPINES	262	78	88		0	0	0	0	0	0	0	0	0	0	0	9	10	9	22	34	48	52	43	15	16	4	0	0	0	0	0	0	0	0	0	0
AY.1	INDIA	80	67	93		5	4	3	0	1	4	8	1	2	3	0	3	1	1	4	2	1	4	4	0	2	4	4	0	3	3	1	0	0	0	0	0
AY.1	JAPAN	75	69	90		0	0	1	3	11	10	11	6	14	1	4	1	0	0	1	0	0	2	1	4	1	2	1	1	0	0	0	0	0	0	0	0
AY.1	PORTUGAL	67	70	95		0	0	0	1	3	12	3	2	6	21	4	4	0	0	5	1	0	1	1	0	0	0	0	0	0	0	1	0	2	0	0	0
AY.1	UK-ENGLAND	57	69	93		0	0	1	7	4	6	11	2	0	1	0	0	0	0	0	1	4	3	2	2	0	0	1	3	0	1	2	0	0	0	0	0
AY.1	SWITZERLAND	44	71	88		0	0	0	0	1	2	3	19	6	9	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
AY.1	POLAND	39	70	86		0	0	0	1	8	0	0	1	1	2	1	1	15	3	3	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	FRANCE	24	74	94		0	0	0	0	0	0	0	1	3	6	2	3	0	1	0	0	1	1	0	0	3	0	0	0	0	0	0	1	0	0	0	0
AY.1	GERMANY	19	72	96		0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	1	2	3	1	1	0	1	4	1	1	0	0	0	0	1	0	0
AY.1	ISRAEL	17	78	93		0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	1	7	1	1	1	0	0	0	0	0	1	0	0	0	0	0
AY.1	CZECH_REPUBLIC	13	76	95		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	2	1	5	0	0	0
AY.1	NEPAL	11	70	86		0	0	0	1	2	1	0	2	2	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	CANADA	10	72	91		0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	1	2	1	1	0	0	0	0	0	0	0
AY.1	DENMARK	10	78	88		0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	1	0	3	0	1	1	0	0	0	0	0	0	0	0	0	0
AY.1	QATAR	9	71	88		0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	2	0	0	0	0	0	0	0	0	0	0
AY.1	GEORGIA	9	80	92		0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	1	0	0	0	0	0	2	2	0	0	0	0	0	0
AY.1	BELGIUM	7	72	88		0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0
AY.1	NETHERLANDS	7	77	96		0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0
AY.1	ITALY	7	80	90		0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0
AY.1	TURKEY	5	88	97		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	3	0
AY.1	UK-NORTHERN_IRELAND	4	81	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
AY.1	UK-SCOTLAND	3	71	85		0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	UK-WALES	3	71	72		0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	SWEDEN	3	87	87		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
AY.1	SOUTH_KOREA	3	88	90		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
AY.1	ROMANIA	2	76	92		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
AY.1	AUSTRALIA	2	70	80		0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	LITHUANIA	2	80	87		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
AY.1	SLOVAKIA	2	76	82		0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	NEW_ZEALAND	2	86	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	ICELAND	2	85	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	AUSTRIA	2	86	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	PAKISTAN	2	93	93		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
AY.1	BAHRAIN	2	94	96		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0
AY.1	RUSSIA	1	68	68		0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	SOUTH_AFRICA	1	73	73		0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	BOTSWANA	1	77	77		0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	KUWAIT	1	80	80		0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	SINGAPORE	1	86	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	REUNION	1	82	82		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	COSTA_RICA	1	85	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	NORWAY	1	85	85		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	PARAGUAY	1	86	86		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	NIGERIA	1	83	83		0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AY.1	UGANDA	1	77	77		0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.