CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Insertions | Insertion

CoV-GLUE Insertion

Details of the insertion across all lineages:

CountORFPositionCodonNumLengthInsertion Sequence
153ORF3a260782293CTT

Details of the insertion within lineages (Proportion represents the prop of sequences with the deletion that are assigned to that lineage):

LineageCountProportion
B.1.1.7240.15686274509804
B.1.1.63210.13725490196078
B.1.1150.098039215686275
AY.4110.071895424836601
B.1.160110.071895424836601
AY.119110.071895424836601
AY.2580.052287581699346
B.160.03921568627451
B.1.1.3350.032679738562092
B.1.250.032679738562092
B.1.617.240.026143790849673
AY.4340.026143790849673
AY.10330.019607843137255
B.1.177.5720.013071895424837
B.1.1.5020.013071895424837
B.1.40010.0065359477124183
B.1.1.28010.0065359477124183
B.1.1.110.0065359477124183
AY.12010.0065359477124183
AY.3.110.0065359477124183
B.1.1.51910.0065359477124183
B.1.1.21410.0065359477124183
B.1.177.5610.0065359477124183
AY.10010.0065359477124183
AY.510.0065359477124183
AY.310.0065359477124183
AY.2610.0065359477124183
B.1.42910.0065359477124183
B.1.1.1010.0065359477124183
B.1.25810.0065359477124183
B.1.49710.0065359477124183
B.2010.0065359477124183
P.1.710.0065359477124183
P.110.0065359477124183
B.1.35110.0065359477124183

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.