CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Insertions | Insertion

CoV-GLUE Insertion

Details of the insertion across all lineages:

CountORFPositionCodonNumLengthInsertion Sequence
386ORF1ab/nsp3669613261T

Details of the insertion within lineages (Proportion represents the prop of sequences with the deletion that are assigned to that lineage):

LineageCountProportion
B.1630.16321243523316
B.1.1.7430.11139896373057
B.1.2360.093264248704663
B.1.617.2140.036269430051813
AY.44130.033678756476684
D.2130.033678756476684
B.1.596110.028497409326425
AY.25100.025906735751295
AY.10390.023316062176166
B.1.170.018134715025907
AY.360.015544041450777
AY.10060.015544041450777
B.1.17750.012953367875648
B.1.56450.012953367875648
AY.3950.012953367875648
AY.450.012953367875648
B.1.58250.012953367875648
B.1.59540.010362694300518
B40.010362694300518
B.1.42940.010362694300518
B.1.1.51940.010362694300518
AY.8230.0077720207253886
B.1.16030.0077720207253886
AU.130.0077720207253886
AY.11930.0077720207253886
AY.7530.0077720207253886
AY.2020.0051813471502591
B.1.52620.0051813471502591
B.320.0051813471502591
B.1.24320.0051813471502591
B.1.32920.0051813471502591
B.1.41620.0051813471502591
B.1.40420.0051813471502591
B.1.36920.0051813471502591
B.3.110.0025906735751295
B.1.1.43210.0025906735751295
B.1.23410.0025906735751295
B.1.1.29410.0025906735751295
AY.3710.0025906735751295
B.1.42610.0025906735751295
P.1.1210.0025906735751295
AY.2610.0025906735751295
B.1.52510.0025906735751295
AY.9810.0025906735751295
B.1.351.210.0025906735751295
B.1.1.22210.0025906735751295
B.1.11010.0025906735751295
AY.4510.0025906735751295
B.1.7010.0025906735751295
A.110.0025906735751295
B.1.177.2010.0025906735751295
AY.2310.0025906735751295
B.1.31910.0025906735751295
AY.39.110.0025906735751295
AY.4210.0025906735751295
B.1.58010.0025906735751295
P.110.0025906735751295
AY.2910.0025906735751295
B.1.24010.0025906735751295
AY.46.410.0025906735751295
B.1.1.2510.0025906735751295
AY.4610.0025906735751295
AY.11310.0025906735751295
B.1.35110.0025906735751295
A.2710.0025906735751295
B.1.57610.0025906735751295
B.1.351.510.0025906735751295
B.1.58910.0025906735751295
B.1.1.3710.0025906735751295
C.3710.0025906735751295
Q.810.0025906735751295
B.1.12010.0025906735751295
AY.12010.0025906735751295
B.1.1.7110.0025906735751295
B.1.60910.0025906735751295
AY.4310.0025906735751295
C.1610.0025906735751295
B.1.466.210.0025906735751295
AY.9310.0025906735751295
B.1.1.22010.0025906735751295
AY.75.110.0025906735751295
B.1.20610.0025906735751295
B.1.177.710.0025906735751295
AY.4710.0025906735751295
B.1.32510.0025906735751295
B.1.1.43410.0025906735751295
AY.10210.0025906735751295
B.1.1.5610.0025906735751295
AY.610.0025906735751295
B.1.59010.0025906735751295
B.1.13910.0025906735751295
AY.5810.0025906735751295
B.1.36710.0025906735751295
AY.6110.0025906735751295
B.1.1.36910.0025906735751295
AY.510.0025906735751295

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.