CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Insertions | Insertion

CoV-GLUE Insertion

Details of the insertion across all lineages:

CountORFPositionCodonNumLengthInsertion Sequence
114ORF1ab/nsp5A-B103861111T

Details of the insertion within lineages (Proportion represents the prop of sequences with the deletion that are assigned to that lineage):

LineageCountProportion
B.1.2270.23684210526316
B.1.1.7190.16666666666667
B.1140.12280701754386
B.1.42770.06140350877193
B.1.42960.052631578947368
B.1.130.026315789473684
B.1.16220.017543859649123
B.1.25820.017543859649123
B.1.617.220.017543859649123
B.1.38020.017543859649123
B.1.59620.017543859649123
B.1.40010.0087719298245614
B.1.13910.0087719298245614
AY.4410.0087719298245614
A10.0087719298245614
B.1.1.1510.0087719298245614
B.1.1.38910.0087719298245614
B.1.36.3810.0087719298245614
B.1.58010.0087719298245614
B.1.55110.0087719298245614
D.210.0087719298245614
B.1.56410.0087719298245614
AY.10210.0087719298245614
B.1.51610.0087719298245614
B.1.35110.0087719298245614
B.1.60910.0087719298245614
B.1.59510.0087719298245614
B.1.24310.0087719298245614
B.1.50910.0087719298245614
AY.11910.0087719298245614
AY.2510.0087719298245614
AY.9210.0087719298245614
P.1.1610.0087719298245614
B.1.910.0087719298245614
B.1.16010.0087719298245614

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.