CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Insertions | Insertion

CoV-GLUE Insertion

Details of the insertion across all lineages:

CountORFPositionCodonNumLengthInsertion Sequence
11969noncoding14141C

Details of the insertion within lineages (Proportion represents the prop of sequences with the deletion that are assigned to that lineage):

LineageCountProportion
B.1.42918860.15757373214137
B.1.4279990.083465619517086
B.1.29010.07527780098588
B.1.1.78610.071935834238449
AY.1038550.071434539226335
AY.448100.067674826635475
AY.256170.051549837079121
AY.263670.030662544907678
B.1.617.23030.025315398111789
Q.32810.023477316400702
AY.32790.02331021806333
B.1.5612270.01896566129167
B.11820.01520594870081
AY.1181810.015122399532125
AY.141780.014871752026067
B.1.1.5191780.014871752026067
AY.201680.01403626033921
B.1.2431330.011112039435208
B.1.2321230.01027654774835
AY.1191160.0096917035675495
AY.471060.0088562118806918
AY.116.11040.0086891135433202
B.1.1.222850.0071016793382906
AY.54820.0068510318322333
AY.13800.0066839334948617
AY.39670.0055977943019467
B.1.1660.0055142451332609
B.1.241640.0053471467958894
B.1.596550.0045952042777174
P.1530.0044281059403459
B.1.551520.0043445567716601
P.1.17520.0043445567716601
AY.75500.0041774584342886
AY.2490.0040939092656028
B.1.126360.0030077700726878
B.1.637350.002924220904002
B.1.577340.0028406717353162
B.1.526330.0027571225666305
B.1.234290.0024229258918874
B.1.1.432270.0022558275545158
B.1.1.316260.0021722783858301
B.1.311240.0020051800484585
B.1.1.416220.001838081711087
B.1.609220.001838081711087
AY.67210.0017545325424012
B.1.621210.0017545325424012
B.1.177200.0016709833737154
AY.48200.0016709833737154
AY.113190.0015874342050297
AY.1170.0014203358676581
B.1.404170.0014203358676581
AY.4160.0013367866989723
AY.3.1160.0013367866989723
B.1.240160.0013367866989723
AY.114150.0012532375302866
B.1.628140.0011696883616008
AY.43130.001086139192915
B.1.369130.001086139192915
AY.46.4130.001086139192915
B.1.400130.001086139192915
B.1.588130.001086139192915
B.1.565120.0010025900242293
AY.5110.00091904085554349
R.1110.00091904085554349
AY.42110.00091904085554349
B.1.351110.00091904085554349
AY.6290.00075194251817194
B.1.621.190.00075194251817194
AY.11790.00075194251817194
AY.3880.00066839334948617
P.280.00066839334948617
AY.3780.00066839334948617
B.1.57580.00066839334948617
B.1.56480.00066839334948617
B.1.23970.0005848441808004
B.1.25870.0005848441808004
AY.11070.0005848441808004
AY.75.170.0005848441808004
B.1.26570.0005848441808004
B.1.1.46470.0005848441808004
B.1.39660.00050129501211463
B.1.59560.00050129501211463
P.1.1060.00050129501211463
AY.98.160.00050129501211463
AY.9860.00050129501211463
AY.3560.00050129501211463
AY.6450.00041774584342886
AY.10750.00041774584342886
AY.39.150.00041774584342886
C.3750.00041774584342886
AY.10050.00041774584342886
B.1.1.17450.00041774584342886
B.1.53950.00041774584342886
AY.12040.00033419667474309
B.1.1.34840.00033419667474309
B.1.59940.00033419667474309
AY.9240.00033419667474309
AY.5.340.00033419667474309
B.1.32440.00033419667474309
B.1.3640.00033419667474309
B.1.40540.00033419667474309
B.1.1.36240.00033419667474309
B.1.13940.00033419667474309
B.1.1.34440.00033419667474309
AY.8140.00033419667474309
AY.7130.00025064750605731
AY.4630.00025064750605731
A30.00025064750605731
B.1.36130.00025064750605731
AY.3630.00025064750605731
P.1.1530.00025064750605731
B.1.1.51230.00025064750605731
AY.9.230.00025064750605731
AY.5230.00025064750605731
B.1.37530.00025064750605731
B.1.1.12830.00025064750605731
B.1.32030.00025064750605731
AY.11630.00025064750605731
AZ.330.00025064750605731
AY.120.130.00025064750605731
B.1.18930.00025064750605731
B.1.1.120.00016709833737154
B.1.1.43420.00016709833737154
Q.120.00016709833737154
B.1.1.37620.00016709833737154
B.1.36.3120.00016709833737154
AY.1920.00016709833737154
B.1.1.20720.00016709833737154
B.1.1.51820.00016709833737154
B.1.56820.00016709833737154
B.1.54120.00016709833737154
B.1.1.31820.00016709833737154
B.1.1.19220.00016709833737154
B.1.1.20520.00016709833737154
B.1.58220.00016709833737154
B.1.63420.00016709833737154
B.1.56720.00016709833737154
B.1.51720.00016709833737154
B.1.37720.00016709833737154
AY.7720.00016709833737154
B.1.39920.00016709833737154
AY.920.00016709833737154
B.1.1.22820.00016709833737154
AY.10920.00016709833737154
B.1.1.36820.00016709833737154
B.1.1.29120.00016709833737154
AY.8820.00016709833737154
B.1.63120.00016709833737154
AY.3320.00016709833737154
B.1.37820.00016709833737154
A.320.00016709833737154
B.1.1.23118.3549168685772E-5
B.1.35618.3549168685772E-5
N.518.3549168685772E-5
B.1.177.5318.3549168685772E-5
B.1.60018.3549168685772E-5
B.1.1.35218.3549168685772E-5
A.2.518.3549168685772E-5
B.1.50618.3549168685772E-5
B.1.400.118.3549168685772E-5
B.1.416.118.3549168685772E-5
B.1.1.35818.3549168685772E-5
B.1.1.24418.3549168685772E-5
AY.46.618.3549168685772E-5
B.1.3718.3549168685772E-5
B.1.1.38918.3549168685772E-5
B.1.1.21618.3549168685772E-5
AY.8618.3549168685772E-5
B.1.1.42618.3549168685772E-5
B.1.1.22018.3549168685772E-5
AY.10618.3549168685772E-5
B.1.36.1018.3549168685772E-5
B.1.63218.3549168685772E-5
B.1.177.3318.3549168685772E-5
B.1.1.22518.3549168685772E-5
B.1.617.118.3549168685772E-5
AY.2418.3549168685772E-5
C.36.118.3549168685772E-5
B.1.16218.3549168685772E-5
B.1.36.118.3549168685772E-5
C.1618.3549168685772E-5
B.1.1.33718.3549168685772E-5
B.1.60218.3549168685772E-5
B.1.1.42318.3549168685772E-5
B.1.1.18618.3549168685772E-5
B.1.34618.3549168685772E-5
B.1.34918.3549168685772E-5
AY.5318.3549168685772E-5
B.1.58718.3549168685772E-5
B.1.30618.3549168685772E-5
B.1.1.1018.3549168685772E-5
B.1.1.51718.3549168685772E-5
B.1.11918.3549168685772E-5
AY.718.3549168685772E-5
B.1.40218.3549168685772E-5
B.1.1.41818.3549168685772E-5
B.1.11118.3549168685772E-5
B.1.16018.3549168685772E-5
B.1.20318.3549168685772E-5
B.1.55618.3549168685772E-5
B.1.22118.3549168685772E-5
B.1.17018.3549168685772E-5
B.1.438.418.3549168685772E-5
B.1.258.1618.3549168685772E-5
B.1.50818.3549168685772E-5
P.1.1318.3549168685772E-5
B.1.1.39218.3549168685772E-5
AY.4.218.3549168685772E-5
B.1.22918.3549168685772E-5
B.1.40118.3549168685772E-5
C.1818.3549168685772E-5
B.1.318.3549168685772E-5
B.1.39718.3549168685772E-5
AY.4918.3549168685772E-5

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.