CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Insertions | Insertion

CoV-GLUE Insertion

Details of the insertion across all lineages:

CountORFPositionCodonNumLengthInsertion Sequence
597ORF1ab/nsp611074341T

Details of the insertion within lineages (Proportion represents the prop of sequences with the deletion that are assigned to that lineage):

LineageCountProportion
B.1.1.71160.19430485762144
B.1380.063651591289782
B.1.177330.055276381909548
AY.43320.053601340033501
B.1.617.2320.053601340033501
B.1.2230.038525963149079
B.1.160200.033500837520938
B.1.351160.02680067001675
AY.44130.02177554438861
AY.4130.02177554438861
B.1.525120.020100502512563
AY.39110.018425460636516
AY.25100.016750418760469
AY.4.590.015075376884422
AY.10380.013400335008375
D.270.011725293132328
B.1.351.250.0083752093802345
AY.11850.0083752093802345
B.1.150.0083752093802345
B40.0067001675041876
AY.98.130.0050251256281407
AY.4530.0050251256281407
P.130.0050251256281407
B.1.56430.0050251256281407
AY.11730.0050251256281407
AY.630.0050251256281407
AY.330.0050251256281407
B.1.1.31830.0050251256281407
B.1.22130.0050251256281407
AY.2330.0050251256281407
B.1.52620.0033500837520938
AY.6920.0033500837520938
B.1.1.44920.0033500837520938
AY.3320.0033500837520938
B.1.23420.0033500837520938
AY.4220.0033500837520938
B.1.177.3220.0033500837520938
AY.520.0033500837520938
B.1.214.220.0033500837520938
B.1.177.1420.0033500837520938
AY.1220.0033500837520938
AY.116.120.0033500837520938
B.1.20620.0033500837520938
Q.420.0033500837520938
B.1.62120.0033500837520938
B.1.575.120.0033500837520938
AY.11920.0033500837520938
B.1.15720.0033500837520938
AY.9220.0033500837520938
AY.12120.0033500837520938
B.1.58220.0033500837520938
B.1.177.2120.0033500837520938
B.1.59620.0033500837520938
B.1.59520.0033500837520938
AY.10020.0033500837520938
AY.4720.0033500837520938
AY.11010.0016750418760469
P.1.1610.0016750418760469
AY.10910.0016750418760469
B.1.40910.0016750418760469
B.1.177.4410.0016750418760469
B.1.1.51910.0016750418760469
B.1.56710.0016750418760469
B.1.42910.0016750418760469
AY.39.110.0016750418760469
C.36.310.0016750418760469
AY.4110.0016750418760469
B.1.1.29810.0016750418760469
AY.1310.0016750418760469
AY.34.110.0016750418760469
AY.3.110.0016750418760469
B.2710.0016750418760469
A.2710.0016750418760469
AY.6710.0016750418760469
B.1.1.110.0016750418760469
AY.7510.0016750418760469
B.1.466.210.0016750418760469
B.1.46210.0016750418760469
B.1.1.33510.0016750418760469
B.1.1.25710.0016750418760469
B.1.177.1110.0016750418760469
AY.5.410.0016750418760469
B.1.50110.0016750418760469
B.1.56110.0016750418760469
B.1.177.7310.0016750418760469
AY.11310.0016750418760469
B.1.1.22210.0016750418760469
AY.5910.0016750418760469
B.1.1.41610.0016750418760469
B.1.62810.0016750418760469
AD.210.0016750418760469
AY.7310.0016750418760469
AY.10210.0016750418760469
B.4010.0016750418760469
B.1.25810.0016750418760469
B.1.62310.0016750418760469
B.1.416.110.0016750418760469
C.1610.0016750418760469
AY.8710.0016750418760469
AY.11110.0016750418760469
B.1.57510.0016750418760469
AY.5410.0016750418760469
B.1.32910.0016750418760469
B.1.42710.0016750418760469
AY.3610.0016750418760469
B.1.32410.0016750418760469
B.1.621.110.0016750418760469
C.3710.0016750418760469
AY.210.0016750418760469
B.1.57410.0016750418760469
AY.7.110.0016750418760469
AY.99.210.0016750418760469
B.4.610.0016750418760469
AY.9810.0016750418760469
B.1.63110.0016750418760469
B.1.51010.0016750418760469
B.1.1.3910.0016750418760469
AY.2010.0016750418760469
A.210.0016750418760469
AY.11410.0016750418760469
P.1.1510.0016750418760469
AY.6110.0016750418760469
B.1.1.7010.0016750418760469
AY.4610.0016750418760469
AY.3510.0016750418760469
AY.6510.0016750418760469
B.1.88.110.0016750418760469
B.1.59910.0016750418760469

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.