CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Insertions | Insertion

CoV-GLUE Insertion

Details of the insertion across all lineages:

CountORFPositionCodonNumLengthInsertion Sequence
10124ORF3a256991023CCC

Details of the insertion within lineages (Proportion represents the prop of sequences with the deletion that are assigned to that lineage):

LineageCountProportion
AY.3470210.69350059265113
AY.10314380.14203871987357
B.1.22350.023212169103121
AY.431610.01590280521533
B.1.1.71410.013927301461873
B.1.617.21080.010667720268669
D.21030.010173844330304
AY.3840.00829711576452
AY.25480.0047412090082971
AY.44470.0046424338206243
AY.4390.0038522323192414
AY.42380.0037534571315685
B.1.1330.0032595811932043
B.1.177.15310.0030620308178586
B.1.177290.0028644804425128
AY.39280.00276570525484
AY.47260.0025681548794943
P.1.15240.0023706045041486
B.1230.0022718293164757
P.1200.0019755037534571
AY.26190.0018767285657843
AY.36190.0018767285657843
AY.34.1180.0017779533781114
B.1.429170.0016791781904386
AY.45160.0015804030027657
AY.102150.0014816278150928
B.1.575130.0012840774397471
AY.29.1130.0012840774397471
B.1.422110.0010865270644014
AY.23110.0010865270644014
AY.100100.00098775187672857
C.35100.00098775187672857
AY.99.280.00079020150138285
B.1.16080.00079020150138285
AY.9.280.00079020150138285
AY.4680.00079020150138285
AY.6980.00079020150138285
B.1.62170.00069142631371
AY.10170.00069142631371
AY.2060.00059265112603714
AY.6560.00059265112603714
B.1.177.8250.00049387593836428
B.1.52650.00049387593836428
AY.11750.00049387593836428
B.1.42750.00049387593836428
B.1.1.150.00049387593836428
B.1.1.51950.00049387593836428
B.1.177.7540.00039510075069143
AY.940.00039510075069143
B.1.1.21440.00039510075069143
AY.2940.00039510075069143
B.1.36.140.00039510075069143
AY.1040.00039510075069143
P.230.00029632556301857
B.1.1.37330.00029632556301857
AY.6230.00029632556301857
B.1.59630.00029632556301857
B.1.22130.00029632556301857
B30.00029632556301857
AY.11930.00029632556301857
B.1.3630.00029632556301857
B.1.1.22230.00029632556301857
B.1.35130.00029632556301857
C.3730.00029632556301857
B.1.49730.00029632556301857
AY.530.00029632556301857
B.1.1.30630.00029632556301857
A.130.00029632556301857
B.1.1.2520.00019755037534571
AY.8520.00019755037534571
AY.5720.00019755037534571
AY.3320.00019755037534571
AY.46.520.00019755037534571
B.1.24320.00019755037534571
AY.10420.00019755037534571
B.1.1.37620.00019755037534571
AY.2720.00019755037534571
AY.8420.00019755037534571
AY.11320.00019755037534571
AY.98.120.00019755037534571
AY.5420.00019755037534571
AY.9820.00019755037534571
AY.119.8775187672857E-5
B.1.1.16419.8775187672857E-5
AY.12019.8775187672857E-5
AY.5819.8775187672857E-5
AY.7519.8775187672857E-5
B.1.24019.8775187672857E-5
B.1.177.1019.8775187672857E-5
B.1.26419.8775187672857E-5
AY.7419.8775187672857E-5
B.1.20819.8775187672857E-5
B.1.31119.8775187672857E-5
P.1.719.8775187672857E-5
AY.11819.8775187672857E-5
B.1.1.15319.8775187672857E-5
AY.7019.8775187672857E-5
AY.619.8775187672857E-5
B.1.1.17019.8775187672857E-5
P.1.1419.8775187672857E-5
B.1.60919.8775187672857E-5
B.1.1.37219.8775187672857E-5
B.1.1.19819.8775187672857E-5
AY.5.319.8775187672857E-5
B.1.42819.8775187672857E-5
AD.219.8775187672857E-5
AY.11019.8775187672857E-5
B.1.52719.8775187672857E-5
AY.1419.8775187672857E-5
AY.11619.8775187672857E-5
B.1.23419.8775187672857E-5
P.1.1219.8775187672857E-5
B.1.62319.8775187672857E-5
B.1.20619.8775187672857E-5
Q.119.8775187672857E-5
AY.4019.8775187672857E-5
B.1.25819.8775187672857E-5
C.119.8775187672857E-5
AY.5919.8775187672857E-5
B.1.59519.8775187672857E-5
AY.46.119.8775187672857E-5
AY.8819.8775187672857E-5
R.119.8775187672857E-5
B.1.56519.8775187672857E-5
AY.4.419.8775187672857E-5
B.1.177.3119.8775187672857E-5

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.