CoV-GLUE Country

CoV-GLUE Country Lineages: COTE_D_IVOIRE

Table of lineages and their respective (filtered) sequence count in country 'COTE_D_IVOIRE'. Week 0 of the epidemic corresponds to 22nd - 28th December 2020 (inclusive). The table is initially sorted by Lineage Count, click on column headings to re-sort.

Country	Lineage	Count	EarliestWeek	LatestWeek	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72
COTE_D_IVOIRE	All	234	22	72	3	2	8	11	3	11	4	6	7	7	2	2	5	2	2	2	2	1	0	1	0	1	0	0	0	0	0	0	0	1	6	1	0	9	7	0	6	13	11	20	6	4	5	24	12	11	4	3	8	0	1
COTE_D_IVOIRE	A.19	48	23	61	0	2	3	6	2	10	2	2	2	3	0	0	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	5	1	0	2	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.525	45	59	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	3	2	0	3	13	4	6	1	2	3	0	1
COTE_D_IVOIRE	B.1.1.7	33	55	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	2	2	4	1	3	2	6	5	1	0	0	3	0	0
COTE_D_IVOIRE	A.27	23	56	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	3	12	1	1	0	1	0	0	0	1	0	0	0
COTE_D_IVOIRE	B.1	22	24	66	0	0	1	0	0	0	1	1	1	0	0	1	1	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	4	0	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0
COTE_D_IVOIRE	A.18	12	26	41	0	0	0	0	1	0	0	0	4	2	1	1	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.1.318	8	65	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	2	0	2	0	0
COTE_D_IVOIRE	B.1.388	7	24	28	0	0	2	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	A.21	7	55	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	0	0	1	0	0	1	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.476	5	29	39	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	A	5	22	66	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.351	4	62	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	0
COTE_D_IVOIRE	B.1.482	3	24	25	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.1.220	3	60	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.1	3	31	34	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.273	1	22	22	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.280	1	25	25	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.140	1	55	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.1.1	1	29	29	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B	1	52	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COTE_D_IVOIRE	B.1.1.404	1	55	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.